RNA–Protein interactions for RNA: ENST00000553011.5

PTCH1-226, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 1,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-226ENST00000553011 PSMB11A5LHX3 300 aa11.12□□□□□ -0.63
PTCH1-226ENST00000553011 SRRM4A7MD48 611 aaKnown RBP11.12□□□□□ -0.63
PTCH1-226ENST00000553011 AP4M1O00189 453 aa11.12□□□□□ -0.63
PTCH1-226ENST00000553011 SHOXO15266 292 aa11.12□□□□□ -0.63
PTCH1-226ENST00000553011 KCNAB3O43448 404 aa11.12□□□□□ -0.63
PTCH1-226ENST00000553011 FCGR3BO75015 233 aa11.12□□□□□ -0.63
PTCH1-226ENST00000553011 IGLV2-23P01705 113 aa11.12□□□□□ -0.63
PTCH1-226ENST00000553011 CD3DP04234 171 aa11.12□□□□□ -0.63
PTCH1-226ENST00000553011 RRASP10301 218 aa11.12□□□□□ -0.63
PTCH1-226ENST00000553011 TSPAN5P62079 268 aa11.12□□□□□ -0.63
PTCH1-226ENST00000553011 MRPS10P82664 201 aaKnown RBP11.12□□□□□ -0.63
PTCH1-226ENST00000553011 NDPQ00604 133 aa11.12□□□□□ -0.63
PTCH1-226ENST00000553011 CBX3Q13185 183 aa11.12□□□□□ -0.63
PTCH1-226ENST00000553011 MSMO1Q15800 293 aa11.12□□□□□ -0.63
PTCH1-226ENST00000553011 ACTBL2Q562R1 376 aa11.12□□□□□ -0.63
PTCH1-226ENST00000553011 TCTEX1D4Q5JR98 221 aa11.12□□□□□ -0.63
PTCH1-226ENST00000553011 VAX1Q5SQQ9 334 aa11.12□□□□□ -0.63
PTCH1-226ENST00000553011 OR6F1Q8NGZ6 308 aa11.12□□□□□ -0.63
PTCH1-226ENST00000553011 SGMS2Q8NHU3 365 aa11.12□□□□□ -0.63
PTCH1-226ENST00000553011 CHPT1Q8WUD6 406 aa11.12□□□□□ -0.63
PTCH1-226ENST00000553011 TCTEX1D2Q8WW35 142 aa11.12□□□□□ -0.63
PTCH1-226ENST00000553011 HARBI1Q96MB7 349 aa11.12□□□□□ -0.63
PTCH1-226ENST00000553011 CLCC1Q96S66 551 aa11.12□□□□□ -0.63
PTCH1-226ENST00000553011 CITED2Q99967 270 aaPredicted RBP11.12□□□□□ -0.63
PTCH1-226ENST00000553011 TINAGL1Q9GZM7 467 aaPredicted RBP11.12□□□□□ -0.63
PTCH1-226ENST00000553011 RABL2AQ9UBK7 228 aaPredicted RBP11.12□□□□□ -0.63
PTCH1-226ENST00000553011 RABL2BQ9UNT1 228 aa11.12□□□□□ -0.63
PTCH1-226ENST00000553011 PRELID3BQ9Y3B1 194 aa11.12□□□□□ -0.63
PTCH1-226ENST00000553011 A3GALT2U3KPV4 340 aa11.12□□□□□ -0.63
PTCH1-226ENST00000553011 FABP12A6NFH5 140 aa11.11□□□□□ -0.63
PTCH1-226ENST00000553011 CTDSPLO15194 276 aa11.11□□□□□ -0.63
PTCH1-226ENST00000553011 SPDEFO95238 335 aa11.11□□□□□ -0.63
PTCH1-226ENST00000553011 GNRHRP30968 328 aa11.11□□□□□ -0.63
PTCH1-226ENST00000553011 LGALS7P47929 136 aa11.11□□□□□ -0.63
PTCH1-226ENST00000553011 BRWD1-AS2P59051 145 aa11.11□□□□□ -0.63
PTCH1-226ENST00000553011 RNASE10Q5GAN6 216 aaKnown RBP11.11□□□□□ -0.63
PTCH1-226ENST00000553011 ZNF66Q6ZN08 573 aa11.11□□□□□ -0.63
PTCH1-226ENST00000553011 TMEM229BQ8NBD8 167 aa11.11□□□□□ -0.63
PTCH1-226ENST00000553011 ZBTB34Q8NCN2 500 aa11.11□□□□□ -0.63
PTCH1-226ENST00000553011 OR4D10Q8NGI6 311 aa11.11□□□□□ -0.63
PTCH1-226ENST00000553011 OR51J1Q9H342 316 aa11.11□□□□□ -0.63
PTCH1-226ENST00000553011 PARP11Q9NR21 331 aa11.11□□□□□ -0.63
PTCH1-226ENST00000553011 ATP6V0E1O15342 81 aa11.1□□□□□ -0.63
PTCH1-226ENST00000553011 CD74P04233 296 aa11.1□□□□□ -0.63
PTCH1-226ENST00000553011 CRYGBP07316 175 aa11.1□□□□□ -0.63
PTCH1-226ENST00000553011 S100A5P33763 92 aa11.1□□□□□ -0.63
PTCH1-226ENST00000553011 TAS2R19P59542 299 aa11.1□□□□□ -0.63
PTCH1-226ENST00000553011 CX3CL1P78423 397 aa11.1□□□□□ -0.63
PTCH1-226ENST00000553011 CD83Q01151 205 aa11.1□□□□□ -0.63
PTCH1-226ENST00000553011 SSBP1Q04837 148 aaKnown RBP11.1□□□□□ -0.63
PTCH1-226ENST00000553011 NSUN5P1Q3KNT7 163 aa11.1□□□□□ -0.63
PTCH1-226ENST00000553011 FBXO7Q9Y3I1 522 aa11.1□□□□□ -0.63
PTCH1-226ENST00000553011 WSB1Q9Y6I7 421 aa11.1□□□□□ -0.63
PTCH1-226ENST00000553011 A0A1W2PRX2 142 aa11.09□□□□□ -0.63
PTCH1-226ENST00000553011 ADARB2-AS1A8MUL3 147 aa11.09□□□□□ -0.63
PTCH1-226ENST00000553011 G3V318 75 aa11.09□□□□□ -0.63
PTCH1-226ENST00000553011 M0QZ24 198 aa11.09□□□□□ -0.63
PTCH1-226ENST00000553011 GSTZ1O43708 216 aaPredicted RBP11.09□□□□□ -0.63
PTCH1-226ENST00000553011 RAB3DO95716 219 aa11.09□□□□□ -0.63
PTCH1-226ENST00000553011 TSPAN15O95858 294 aa11.09□□□□□ -0.63
PTCH1-226ENST00000553011 CA2P00918 260 aa11.09□□□□□ -0.63
PTCH1-226ENST00000553011 IFNA6P05013 189 aa11.09□□□□□ -0.63
PTCH1-226ENST00000553011 IGF1P05019 195 aa11.09□□□□□ -0.63
PTCH1-226ENST00000553011 TBPP20226 339 aa11.09□□□□□ -0.63
PTCH1-226ENST00000553011 PJVKQ0ZLH3 352 aa11.09□□□□□ -0.63
PTCH1-226ENST00000553011 PRR31Q5SQ13 230 aa11.09□□□□□ -0.63
PTCH1-226ENST00000553011 AADACL3Q5VUY0 350 aa11.09□□□□□ -0.63
PTCH1-226ENST00000553011 STEAP1BQ6NZ63 245 aa11.09□□□□□ -0.63
PTCH1-226ENST00000553011 CCDC190Q86UF4 302 aa11.09□□□□□ -0.63
PTCH1-226ENST00000553011 OR4X2Q8NGF9 303 aa11.09□□□□□ -0.63
PTCH1-226ENST00000553011 OR51H1Q8NH63 302 aa11.09□□□□□ -0.63
PTCH1-226ENST00000553011 OR4S2Q8NH73 311 aa11.09□□□□□ -0.63
PTCH1-226ENST00000553011 OSR1Q8TAX0 266 aaPredicted RBP11.09□□□□□ -0.63
PTCH1-226ENST00000553011 V9GYH0 126 aa11.09□□□□□ -0.63
PTCH1-226ENST00000553011 NOTCH1P46531 2555 aa11.09□□□□□ -0.63
PTCH1-226ENST00000553011 FBN3Q75N90 2809 aa11.08□□□□□ -0.63
PTCH1-226ENST00000553011 TCRBV4S1A1TA0A5B7 111 aa11.08□□□□□ -0.64
PTCH1-226ENST00000553011 GPR31O00270 319 aa11.08□□□□□ -0.64
PTCH1-226ENST00000553011 RAMP3O60896 148 aa11.08□□□□□ -0.64
PTCH1-226ENST00000553011 RLN1P04808 185 aa11.08□□□□□ -0.64
PTCH1-226ENST00000553011 CSF1P09603 554 aa11.08□□□□□ -0.64
PTCH1-226ENST00000553011 SAA1P0DJI8 122 aaPredicted RBP11.08□□□□□ -0.64
PTCH1-226ENST00000553011 UBE2KP61086 200 aa11.08□□□□□ -0.64
PTCH1-226ENST00000553011 SLC35B1P78383 322 aa11.08□□□□□ -0.64
PTCH1-226ENST00000553011 SSBP2P81877 361 aaPredicted RBP11.08□□□□□ -0.64
PTCH1-226ENST00000553011 CFHR3Q02985 330 aa11.08□□□□□ -0.64
PTCH1-226ENST00000553011 CATR1Q13166 79 aa11.08□□□□□ -0.64
PTCH1-226ENST00000553011 C2orf68Q2NKX9 166 aa11.08□□□□□ -0.64
PTCH1-226ENST00000553011 VMA21Q3ZAQ7 101 aa11.08□□□□□ -0.64
PTCH1-226ENST00000553011 PHLDA2Q53GA4 152 aa11.08□□□□□ -0.64
PTCH1-226ENST00000553011 KHDC1LQ5JSQ8 128 aa11.08□□□□□ -0.64
PTCH1-226ENST00000553011 FAAP20Q6NZ36 180 aa11.08□□□□□ -0.64
PTCH1-226ENST00000553011 IDO2Q6ZQW0 420 aa11.08□□□□□ -0.64
PTCH1-226ENST00000553011 PPP1R27Q86WC6 154 aa11.08□□□□□ -0.64
PTCH1-226ENST00000553011 LHFPL1Q86WI0 220 aa11.08□□□□□ -0.64
PTCH1-226ENST00000553011 NDUFA11Q86Y39 141 aa11.08□□□□□ -0.64
PTCH1-226ENST00000553011 VKORC1L1Q8N0U8 176 aa11.08□□□□□ -0.64
PTCH1-226ENST00000553011 SPAG16Q8N0X2 631 aa11.08□□□□□ -0.64
PTCH1-226ENST00000553011 OR6Q1Q8NGQ2 317 aa11.08□□□□□ -0.64
PTCH1-226ENST00000553011 ABHD5Q8WTS1 349 aa11.08□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms