RNA–Protein interactions for RNA: ENST00000550220.1

VTI1BP3-201, Transcript of vesicle transport through interaction with t-SNAREs 1B pseudogene 3, humanhuman

BASIC

Gene VTI1BP3, Length 636 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1BP3-201ENST00000550220 MS4A10Q96PG2 267 aa8.4□□□□□ -1.06
VTI1BP3-201ENST00000550220 ALX4Q9H161 411 aaPredicted RBP8.4□□□□□ -1.06
VTI1BP3-201ENST00000550220 IGHV4OR15-8A0A075B7B6 117 aa8.39□□□□□ -1.07
VTI1BP3-201ENST00000550220 A0A087WW49 117 aa8.39□□□□□ -1.07
VTI1BP3-201ENST00000550220 IGLV2-23P01705 113 aa8.39□□□□□ -1.07
VTI1BP3-201ENST00000550220 IGHV3-11P01762 117 aa8.39□□□□□ -1.07
VTI1BP3-201ENST00000550220 CRYGBP07316 175 aa8.39□□□□□ -1.07
VTI1BP3-201ENST00000550220 SLURP1P55000 103 aa8.39□□□□□ -1.07
VTI1BP3-201ENST00000550220 PLA2G7Q13093 441 aa8.39□□□□□ -1.07
VTI1BP3-201ENST00000550220 CDNFQ49AH0 187 aa8.39□□□□□ -1.07
VTI1BP3-201ENST00000550220 HACD4Q5VWC8 232 aa8.39□□□□□ -1.07
VTI1BP3-201ENST00000550220 H1FOOQ8IZA3 346 aaPredicted RBP8.39□□□□□ -1.07
VTI1BP3-201ENST00000550220 BVESQ8NE79 360 aa8.39□□□□□ -1.07
VTI1BP3-201ENST00000550220 ZNF230Q9UIE0 474 aaPredicted RBP8.39□□□□□ -1.07
VTI1BP3-201ENST00000550220 STUB1Q9UNE7 303 aa8.39□□□□□ -1.07
VTI1BP3-201ENST00000550220 SSR3Q9UNL2 185 aa8.39□□□□□ -1.07
VTI1BP3-201ENST00000550220 PRELID3BQ9Y3B1 194 aa8.39□□□□□ -1.07
VTI1BP3-201ENST00000550220 SORL1Q92673 2214 aa8.39□□□□□ -1.07
VTI1BP3-201ENST00000550220 SHISA3A0PJX4 238 aa8.38□□□□□ -1.07
VTI1BP3-201ENST00000550220 TMEM127O75204 238 aa8.38□□□□□ -1.07
VTI1BP3-201ENST00000550220 ACTL6BO94805 426 aa8.38□□□□□ -1.07
VTI1BP3-201ENST00000550220 GP9P14770 177 aa8.38□□□□□ -1.07
VTI1BP3-201ENST00000550220 SPNP16150 400 aa8.38□□□□□ -1.07
VTI1BP3-201ENST00000550220 CD36P16671 472 aa8.38□□□□□ -1.07
VTI1BP3-201ENST00000550220 PSMB9P28065 219 aa8.38□□□□□ -1.07
VTI1BP3-201ENST00000550220 DUTP33316 252 aaKnown RBP8.38□□□□□ -1.07
VTI1BP3-201ENST00000550220 SCAND1P57086 179 aa8.38□□□□□ -1.07
VTI1BP3-201ENST00000550220 LINC00205P59089 165 aa8.38□□□□□ -1.07
VTI1BP3-201ENST00000550220 UBE2KP61086 200 aa8.38□□□□□ -1.07
VTI1BP3-201ENST00000550220 FAM209BQ5JX69 171 aa8.38□□□□□ -1.07
VTI1BP3-201ENST00000550220 CNIH2Q6PI25 160 aa8.38□□□□□ -1.07
VTI1BP3-201ENST00000550220 ANKRD13BQ86YJ7 626 aa8.38□□□□□ -1.07
VTI1BP3-201ENST00000550220 OR5T1Q8NG75 326 aa8.38□□□□□ -1.07
VTI1BP3-201ENST00000550220 CASTOR1Q8WTX7 329 aa8.38□□□□□ -1.07
VTI1BP3-201ENST00000550220 PHB2Q99623 299 aa8.38□□□□□ -1.07
VTI1BP3-201ENST00000550220 ST6GALNAC5Q9BVH7 336 aa8.38□□□□□ -1.07
VTI1BP3-201ENST00000550220 TINAGL1Q9GZM7 467 aaPredicted RBP8.38□□□□□ -1.07
VTI1BP3-201ENST00000550220 TXNL4BQ9NX01 149 aaKnown RBP8.38□□□□□ -1.07
VTI1BP3-201ENST00000550220 MRPS7Q9Y2R9 242 aaKnown RBP8.38□□□□□ -1.07
VTI1BP3-201ENST00000550220 OR2W1Q9Y3N9 320 aa8.38□□□□□ -1.07
VTI1BP3-201ENST00000550220 TENM3Q9P273 2699 aa8.37□□□□□ -1.07
VTI1BP3-201ENST00000550220 MSGN1A6NI15 193 aa8.37□□□□□ -1.07
VTI1BP3-201ENST00000550220 H0Y980 276 aa8.37□□□□□ -1.07
VTI1BP3-201ENST00000550220 GNG2P59768 71 aa8.37□□□□□ -1.07
VTI1BP3-201ENST00000550220 PRSS8Q16651 343 aa8.37□□□□□ -1.07
VTI1BP3-201ENST00000550220 SPARTQ8N0X7 666 aa8.37□□□□□ -1.07
VTI1BP3-201ENST00000550220 ZNF645Q8N7E2 425 aa8.37□□□□□ -1.07
VTI1BP3-201ENST00000550220 MAFIPQ8WZ33 124 aa8.37□□□□□ -1.07
VTI1BP3-201ENST00000550220 DDB2Q92466 427 aa8.37□□□□□ -1.07
VTI1BP3-201ENST00000550220 SPIN2AQ99865 258 aa8.37□□□□□ -1.07
VTI1BP3-201ENST00000550220 SPIN2BQ9BPZ2 258 aa8.37□□□□□ -1.07
VTI1BP3-201ENST00000550220 PEF1Q9UBV8 284 aaKnown RBP8.37□□□□□ -1.07
VTI1BP3-201ENST00000550220 A0A0A6YYH2 397 aa8.36□□□□□ -1.07
VTI1BP3-201ENST00000550220 A0A0B4J203 849 aa8.36□□□□□ -1.07
VTI1BP3-201ENST00000550220 A6NJ64 397 aa8.36□□□□□ -1.07
VTI1BP3-201ENST00000550220 SRRM4A7MD48 611 aaKnown RBP8.36□□□□□ -1.07
VTI1BP3-201ENST00000550220 C3orf84H3BNL1 204 aa8.36□□□□□ -1.07
VTI1BP3-201ENST00000550220 MPPED1O15442 326 aa8.36□□□□□ -1.07
VTI1BP3-201ENST00000550220 CRYZL1O95825 349 aa8.36□□□□□ -1.07
VTI1BP3-201ENST00000550220 HLA-DQB1P01920 261 aa8.36□□□□□ -1.07
VTI1BP3-201ENST00000550220 OR9G9P0C7N8 305 aa8.36□□□□□ -1.07
VTI1BP3-201ENST00000550220 PJVKQ0ZLH3 352 aa8.36□□□□□ -1.07
VTI1BP3-201ENST00000550220 KLF5Q13887 457 aaPredicted RBP8.36□□□□□ -1.07
VTI1BP3-201ENST00000550220 ZNF343Q6P1L6 599 aa8.36□□□□□ -1.07
VTI1BP3-201ENST00000550220 SLC25A42Q86VD7 318 aa8.36□□□□□ -1.07
VTI1BP3-201ENST00000550220 MMD2Q8IY49 270 aa8.36□□□□□ -1.07
VTI1BP3-201ENST00000550220 VSTM2AQ8TAG5 236 aa8.36□□□□□ -1.07
VTI1BP3-201ENST00000550220 SNAPC3Q92966 411 aa8.36□□□□□ -1.07
VTI1BP3-201ENST00000550220 HSD17B10Q99714 261 aaKnown RBP8.36□□□□□ -1.07
VTI1BP3-201ENST00000550220 AIFM2Q9BRQ8 373 aa8.36□□□□□ -1.07
VTI1BP3-201ENST00000550220 DCUN1D5Q9BTE7 237 aa8.36□□□□□ -1.07
VTI1BP3-201ENST00000550220 ZMAT4Q9H898 229 aa8.36□□□□□ -1.07
VTI1BP3-201ENST00000550220 COA4Q9NYJ1 87 aa8.36□□□□□ -1.07
VTI1BP3-201ENST00000550220 DAPK2Q9UIK4 370 aa8.36□□□□□ -1.07
VTI1BP3-201ENST00000550220 RRP15Q9Y3B9 282 aaKnown RBP8.36□□□□□ -1.07
VTI1BP3-201ENST00000550220 ETV7Q9Y603 341 aa8.36□□□□□ -1.07
VTI1BP3-201ENST00000550220 DNAH9Q9NYC9 4486 aa8.35□□□□□ -1.07
VTI1BP3-201ENST00000550220 FAM223BA6NKX1 122 aa8.35□□□□□ -1.07
VTI1BP3-201ENST00000550220 AIREO43918 545 aa8.35□□□□□ -1.07
VTI1BP3-201ENST00000550220 ATP6V1G2O95670 118 aa8.35□□□□□ -1.07
VTI1BP3-201ENST00000550220 IGLV1-51P01701 117 aa8.35□□□□□ -1.07
VTI1BP3-201ENST00000550220 SSBP2P81877 361 aaPredicted RBP8.35□□□□□ -1.07
VTI1BP3-201ENST00000550220 CDK10Q15131 360 aa8.35□□□□□ -1.07
VTI1BP3-201ENST00000550220 MSMO1Q15800 293 aa8.35□□□□□ -1.07
VTI1BP3-201ENST00000550220 TNXAQ16473 311 aa8.35□□□□□ -1.07
VTI1BP3-201ENST00000550220 SFXN4Q6P4A7 337 aa8.35□□□□□ -1.07
VTI1BP3-201ENST00000550220 ZNF66Q6ZN08 573 aa8.35□□□□□ -1.07
VTI1BP3-201ENST00000550220 OVCH2Q7RTZ1 564 aa8.35□□□□□ -1.07
VTI1BP3-201ENST00000550220 NR2C2APQ86WQ0 139 aa8.35□□□□□ -1.07
VTI1BP3-201ENST00000550220 FAM223AQ8IWN6 122 aa8.35□□□□□ -1.07
VTI1BP3-201ENST00000550220 ADAD2Q8NCV1 583 aaKnown RBP8.35□□□□□ -1.07
VTI1BP3-201ENST00000550220 OR9G4Q8NGQ1 327 aa8.35□□□□□ -1.07
VTI1BP3-201ENST00000550220 SRSF12Q8WXF0 261 aaKnown RBP8.35□□□□□ -1.07
VTI1BP3-201ENST00000550220 ASCL2Q99929 193 aa8.35□□□□□ -1.07
VTI1BP3-201ENST00000550220 RSRP1Q9BUV0 290 aa8.35□□□□□ -1.07
VTI1BP3-201ENST00000550220 SIGLEC8Q9NYZ4 499 aa8.35□□□□□ -1.07
VTI1BP3-201ENST00000550220 PEMTQ9UBM1 199 aa8.35□□□□□ -1.07
VTI1BP3-201ENST00000550220 ANXA10Q9UJ72 324 aa8.35□□□□□ -1.07
VTI1BP3-201ENST00000550220 RBMX2Q9Y388 322 aaKnown RBP8.35□□□□□ -1.07
VTI1BP3-201ENST00000550220 IGKV1D-8A0A087WSZ0 117 aa8.34□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms