RNA–Protein interactions for RNA: ENST00000540230.5

UBE3B-212, Transcript of ubiquitin protein ligase E3B, humanhuman

TSL 1 (best) BASIC

Gene UBE3B, Length 1,541 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3B-212ENST00000540230 PDLIM3Q53GG5 364 aaPredicted RBP11.75□□□□□ -0.53
UBE3B-212ENST00000540230 OR2B11Q5JQS5 317 aa11.75□□□□□ -0.53
UBE3B-212ENST00000540230 ABHD5Q8WTS1 349 aa11.75□□□□□ -0.53
UBE3B-212ENST00000540230 RAX2Q96IS3 184 aa11.75□□□□□ -0.53
UBE3B-212ENST00000540230 P2RX4Q99571 388 aa11.75□□□□□ -0.53
UBE3B-212ENST00000540230 ANAPC10Q9UM13 185 aa11.75□□□□□ -0.53
UBE3B-212ENST00000540230 NUBP2Q9Y5Y2 271 aa11.75□□□□□ -0.53
UBE3B-212ENST00000540230 A0A1W2PN81 502 aa11.74□□□□□ -0.53
UBE3B-212ENST00000540230 SHOXO15266 292 aa11.74□□□□□ -0.53
UBE3B-212ENST00000540230 ELK1P19419 428 aa11.74□□□□□ -0.53
UBE3B-212ENST00000540230 CHRNA7P36544 502 aa11.74□□□□□ -0.53
UBE3B-212ENST00000540230 CDX1P47902 265 aaPredicted RBP11.74□□□□□ -0.53
UBE3B-212ENST00000540230 RTL8BQ17RB0 113 aa11.74□□□□□ -0.53
UBE3B-212ENST00000540230 ZNF562Q6V9R5 426 aa11.74□□□□□ -0.53
UBE3B-212ENST00000540230 KCTD9Q7L273 389 aa11.74□□□□□ -0.53
UBE3B-212ENST00000540230 ADTRPQ96IZ2 230 aa11.74□□□□□ -0.53
UBE3B-212ENST00000540230 GNB4Q9HAV0 340 aa11.74□□□□□ -0.53
UBE3B-212ENST00000540230 PPYP01298 95 aa11.73□□□□□ -0.53
UBE3B-212ENST00000540230 APOA1P02647 267 aa11.73□□□□□ -0.53
UBE3B-212ENST00000540230 CBX5P45973 191 aa11.73□□□□□ -0.53
UBE3B-212ENST00000540230 LGALS7P47929 136 aa11.73□□□□□ -0.53
UBE3B-212ENST00000540230 RORCP51449 518 aa11.73□□□□□ -0.53
UBE3B-212ENST00000540230 BRWD1-AS2P59051 145 aa11.73□□□□□ -0.53
UBE3B-212ENST00000540230 IDO2Q6ZQW0 420 aa11.73□□□□□ -0.53
UBE3B-212ENST00000540230 GPR141Q7Z602 305 aa11.73□□□□□ -0.53
UBE3B-212ENST00000540230 PPP1R27Q86WC6 154 aa11.73□□□□□ -0.53
UBE3B-212ENST00000540230 LFNGQ8NES3 379 aa11.73□□□□□ -0.53
UBE3B-212ENST00000540230 OR5AP2Q8NGF4 316 aa11.73□□□□□ -0.53
UBE3B-212ENST00000540230 SECTM1Q8WVN6 248 aa11.73□□□□□ -0.53
UBE3B-212ENST00000540230 IFT46Q9NQC8 304 aa11.73□□□□□ -0.53
UBE3B-212ENST00000540230 CCL28Q9NRJ3 127 aa11.73□□□□□ -0.53
UBE3B-212ENST00000540230 NECAP2Q9NVZ3 263 aa11.73□□□□□ -0.53
UBE3B-212ENST00000540230 TNCP24821 2201 aa11.73□□□□□ -0.53
UBE3B-212ENST00000540230 CCL24O00175 119 aa11.72□□□□□ -0.53
UBE3B-212ENST00000540230 FCGR3BO75015 233 aa11.72□□□□□ -0.53
UBE3B-212ENST00000540230 RRASP10301 218 aa11.72□□□□□ -0.53
UBE3B-212ENST00000540230 MYCNOSP40205 109 aa11.72□□□□□ -0.53
UBE3B-212ENST00000540230 RAB9AP51151 201 aa11.72□□□□□ -0.53
UBE3B-212ENST00000540230 FXYD4P59646 89 aa11.72□□□□□ -0.53
UBE3B-212ENST00000540230 GNB1P62873 340 aa11.72□□□□□ -0.53
UBE3B-212ENST00000540230 TAGLNQ01995 201 aaKnown RBP11.72□□□□□ -0.53
UBE3B-212ENST00000540230 FXYD3Q14802 87 aa11.72□□□□□ -0.53
UBE3B-212ENST00000540230 SPCS2Q15005 226 aa11.72□□□□□ -0.53
UBE3B-212ENST00000540230 CDK10Q15131 360 aa11.72□□□□□ -0.53
UBE3B-212ENST00000540230 FOXB2Q5VYV0 432 aa11.72□□□□□ -0.53
UBE3B-212ENST00000540230 UNQ5815/PRO19632Q6UWF5 114 aa11.72□□□□□ -0.53
UBE3B-212ENST00000540230 OVCH2Q7RTZ1 564 aa11.72□□□□□ -0.53
UBE3B-212ENST00000540230 ZNF491Q8N8L2 437 aa11.72□□□□□ -0.53
UBE3B-212ENST00000540230 GRPEL2Q8TAA5 225 aa11.72□□□□□ -0.53
UBE3B-212ENST00000540230 ARPC1AQ92747 370 aa11.72□□□□□ -0.53
UBE3B-212ENST00000540230 OR5B12Q96R08 314 aa11.72□□□□□ -0.53
UBE3B-212ENST00000540230 TAS2R8Q9NYW2 309 aa11.72□□□□□ -0.53
UBE3B-212ENST00000540230 FOXA2Q9Y261 457 aaPredicted RBP11.72□□□□□ -0.53
UBE3B-212ENST00000540230 MRPS7Q9Y2R9 242 aaKnown RBP11.72□□□□□ -0.53
UBE3B-212ENST00000540230 TNFSF12O43508 249 aa11.71□□□□□ -0.53
UBE3B-212ENST00000540230 NAT1P18440 290 aa11.71□□□□□ -0.53
UBE3B-212ENST00000540230 SLC6A1P30531 599 aa11.71□□□□□ -0.53
UBE3B-212ENST00000540230 PRSS3P35030 304 aa11.71□□□□□ -0.53
UBE3B-212ENST00000540230 RFX2P48378 723 aa11.71□□□□□ -0.53
UBE3B-212ENST00000540230 CBX3Q13185 183 aa11.71□□□□□ -0.53
UBE3B-212ENST00000540230 SNX29P2Q8IUI4 249 aa11.71□□□□□ -0.53
UBE3B-212ENST00000540230 GPX8Q8TED1 209 aa11.71□□□□□ -0.53
UBE3B-212ENST00000540230 C4orf3Q8WVX3 66 aa11.71□□□□□ -0.53
UBE3B-212ENST00000540230 TCTEX1D2Q8WW35 142 aa11.71□□□□□ -0.53
UBE3B-212ENST00000540230 ACOT12Q8WYK0 555 aa11.71□□□□□ -0.53
UBE3B-212ENST00000540230 EHFQ9NZC4 300 aa11.71□□□□□ -0.53
UBE3B-212ENST00000540230 SLC22A5O76082 557 aa11.7□□□□□ -0.54
UBE3B-212ENST00000540230 PMP2P02689 132 aa11.7□□□□□ -0.54
UBE3B-212ENST00000540230 SAA1P0DJI8 122 aaPredicted RBP11.7□□□□□ -0.54
UBE3B-212ENST00000540230 UBE2KP61086 200 aa11.7□□□□□ -0.54
UBE3B-212ENST00000540230 AKIRIN2Q53H80 203 aa11.7□□□□□ -0.54
UBE3B-212ENST00000540230 ACTBL2Q562R1 376 aa11.7□□□□□ -0.54
UBE3B-212ENST00000540230 ASPHD1Q5U4P2 390 aa11.7□□□□□ -0.54
UBE3B-212ENST00000540230 TMEM65Q6PI78 240 aa11.7□□□□□ -0.54
UBE3B-212ENST00000540230 TMEM17Q86X19 198 aa11.7□□□□□ -0.54
UBE3B-212ENST00000540230 CLVS1Q8IUQ0 354 aaPredicted RBP11.7□□□□□ -0.54
UBE3B-212ENST00000540230 MFSD4AQ8N468 514 aa11.7□□□□□ -0.54
UBE3B-212ENST00000540230 OSR1Q8TAX0 266 aaPredicted RBP11.7□□□□□ -0.54
UBE3B-212ENST00000540230 UBE2E2Q96LR5 201 aa11.7□□□□□ -0.54
UBE3B-212ENST00000540230 CMTM3Q96MX0 182 aa11.7□□□□□ -0.54
UBE3B-212ENST00000540230 ALX4Q9H161 411 aaPredicted RBP11.7□□□□□ -0.54
UBE3B-212ENST00000540230 I3L521 148 aa11.7□□□□□ -0.54
UBE3B-212ENST00000540230 ZNF182P17025 639 aaPredicted RBP11.7□□□□□ -0.54
UBE3B-212ENST00000540230 RAB25P57735 213 aa11.7□□□□□ -0.54
UBE3B-212ENST00000540230 ZNF818PQ6ZRF7 136 aa11.7□□□□□ -0.54
UBE3B-212ENST00000540230 LYSMD2Q8IV50 215 aa11.7□□□□□ -0.54
UBE3B-212ENST00000540230 VKORC1L1Q8N0U8 176 aa11.7□□□□□ -0.54
UBE3B-212ENST00000540230 TCTEX1D1Q8N7M0 179 aa11.7□□□□□ -0.54
UBE3B-212ENST00000540230 GIMAP1Q8WWP7 306 aa11.7□□□□□ -0.54
UBE3B-212ENST00000540230 RCC1LQ96I51 464 aaKnown RBP11.7□□□□□ -0.54
UBE3B-212ENST00000540230 MS4A10Q96PG2 267 aa11.7□□□□□ -0.54
UBE3B-212ENST00000540230 HSD17B10Q99714 261 aaKnown RBP11.7□□□□□ -0.54
UBE3B-212ENST00000540230 SLC5A7Q9GZV3 580 aa11.7□□□□□ -0.54
UBE3B-212ENST00000540230 PRELID3BQ9Y3B1 194 aa11.7□□□□□ -0.54
UBE3B-212ENST00000540230 CNIH1O95406 144 aa11.69□□□□□ -0.54
UBE3B-212ENST00000540230 APELAP0DMC3 54 aa11.69□□□□□ -0.54
UBE3B-212ENST00000540230 HLA-DMAP28067 261 aa11.69□□□□□ -0.54
UBE3B-212ENST00000540230 HOXD3P31249 432 aaPredicted RBP11.69□□□□□ -0.54
UBE3B-212ENST00000540230 TMEM267Q0VDI3 215 aaPredicted RBP11.69□□□□□ -0.54
UBE3B-212ENST00000540230 DYRK1AQ13627 763 aa11.69□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms