RNA–Protein interactions for RNA: ENST00000540022.5

TNFRSF1A-213, Transcript of TNF receptor superfamily member 1A, humanhuman

TSL 1 (best) BASIC

Gene TNFRSF1A, Length 1,527 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF1A-213ENST00000540022 SLC35D1Q9NTN3 355 aa15.22■□□□□ 0.03
TNFRSF1A-213ENST00000540022 PRAF2O60831 178 aa15.21■□□□□ 0.03
TNFRSF1A-213ENST00000540022 APOA2P02652 100 aa15.21■□□□□ 0.03
TNFRSF1A-213ENST00000540022 FBP1P09467 338 aa15.21■□□□□ 0.03
TNFRSF1A-213ENST00000540022 HNF1AP20823 631 aa15.21■□□□□ 0.03
TNFRSF1A-213ENST00000540022 RAB13P51153 203 aa15.21■□□□□ 0.03
TNFRSF1A-213ENST00000540022 TMEM187Q14656 261 aa15.21■□□□□ 0.03
TNFRSF1A-213ENST00000540022 DEFB112Q30KQ8 113 aa15.21■□□□□ 0.03
TNFRSF1A-213ENST00000540022 FBN1P35555 2871 aaKnown RBP15.21■□□□□ 0.02
TNFRSF1A-213ENST00000540022 COL6A5A8TX70 2615 aa15.2■□□□□ 0.02
TNFRSF1A-213ENST00000540022 MXRA5Q9NR99 2828 aa15.2■□□□□ 0.02
TNFRSF1A-213ENST00000540022 H7C2Y5 167 aa15.2■□□□□ 0.02
TNFRSF1A-213ENST00000540022 IFNA2P01563 188 aa15.2■□□□□ 0.02
TNFRSF1A-213ENST00000540022 IGKV1-16P04430 117 aa15.2■□□□□ 0.02
TNFRSF1A-213ENST00000540022 CD24P25063 80 aa15.2■□□□□ 0.02
TNFRSF1A-213ENST00000540022 UCP1P25874 307 aa15.2■□□□□ 0.02
TNFRSF1A-213ENST00000540022 MC5RP33032 325 aa15.2■□□□□ 0.02
TNFRSF1A-213ENST00000540022 ANKRD55Q3KP44 614 aa15.2■□□□□ 0.02
TNFRSF1A-213ENST00000540022 C11orf88Q6PI97 169 aa15.2■□□□□ 0.02
TNFRSF1A-213ENST00000540022 Q6ZNX1 250 aa15.2■□□□□ 0.02
TNFRSF1A-213ENST00000540022 TCTEX1D1Q8N7M0 179 aa15.2■□□□□ 0.02
TNFRSF1A-213ENST00000540022 ZNF431Q8TF32 576 aaPredicted RBP15.2■□□□□ 0.02
TNFRSF1A-213ENST00000540022 TMEM222Q9H0R3 208 aa15.2■□□□□ 0.02
TNFRSF1A-213ENST00000540022 WASHC3Q9Y3C0 194 aa15.2■□□□□ 0.02
TNFRSF1A-213ENST00000540022 A0A0A6YYJ9 748 aa15.19■□□□□ 0.02
TNFRSF1A-213ENST00000540022 RBFOX2O43251 390 aaKnown RBP eCLIP15.19■□□□□ 0.022e-7■■■■□ 22.6
TNFRSF1A-213ENST00000540022 B3GALNT1O75752 331 aa15.19■□□□□ 0.02
TNFRSF1A-213ENST00000540022 VENTXO95231 258 aa15.19■□□□□ 0.02
TNFRSF1A-213ENST00000540022 DUS4LO95620 317 aaKnown RBP15.19■□□□□ 0.02
TNFRSF1A-213ENST00000540022 CD1BP29016 333 aa15.19■□□□□ 0.02
TNFRSF1A-213ENST00000540022 KIR2DS2P43631 304 aa15.19■□□□□ 0.02
TNFRSF1A-213ENST00000540022 LPAR6P43657 344 aa15.19■□□□□ 0.02
TNFRSF1A-213ENST00000540022 TAGLNQ01995 201 aaKnown RBP15.19■□□□□ 0.02
TNFRSF1A-213ENST00000540022 FBLN7Q53RD9 439 aa15.19■□□□□ 0.02
TNFRSF1A-213ENST00000540022 PDPNQ86YL7 162 aa15.19■□□□□ 0.02
TNFRSF1A-213ENST00000540022 LHFPL5Q8TAF8 219 aa15.19■□□□□ 0.02
TNFRSF1A-213ENST00000540022 CDC42EP3Q9UKI2 254 aa15.19■□□□□ 0.02
TNFRSF1A-213ENST00000540022 ALG5Q9Y673 324 aa15.19■□□□□ 0.02
TNFRSF1A-213ENST00000540022 C7orf66A4D0T2 115 aa15.18■□□□□ 0.02
TNFRSF1A-213ENST00000540022 FAM90A9PA6NNJ1 464 aa15.18■□□□□ 0.02
TNFRSF1A-213ENST00000540022 CRYZL1O95825 349 aa15.18■□□□□ 0.02
TNFRSF1A-213ENST00000540022 IGKV1-39P01597 117 aa15.18■□□□□ 0.02
TNFRSF1A-213ENST00000540022 IGKV1D-39P04432 117 aa15.18■□□□□ 0.02
TNFRSF1A-213ENST00000540022 SERPINE2P07093 398 aa15.18■□□□□ 0.02
TNFRSF1A-213ENST00000540022 ANXA3P12429 323 aa15.18■□□□□ 0.02
TNFRSF1A-213ENST00000540022 ARHGDIBP52566 201 aa15.18■□□□□ 0.02
TNFRSF1A-213ENST00000540022 CBX3Q13185 183 aa15.18■□□□□ 0.02
TNFRSF1A-213ENST00000540022 RTL8BQ17RB0 113 aa15.18■□□□□ 0.02
TNFRSF1A-213ENST00000540022 LIAT1Q6ZQX7 453 aa15.18■□□□□ 0.02
TNFRSF1A-213ENST00000540022 OR4S2Q8NH73 311 aa15.18■□□□□ 0.02
TNFRSF1A-213ENST00000540022 CD300LFQ8TDQ1 290 aa15.18■□□□□ 0.02
TNFRSF1A-213ENST00000540022 ZNF48Q96MX3 618 aaPredicted RBP15.18■□□□□ 0.02
TNFRSF1A-213ENST00000540022 GPN1Q9HCN4 374 aaPredicted RBP15.18■□□□□ 0.02
TNFRSF1A-213ENST00000540022 FAM212BQ9NTI7 297 aaPredicted RBP15.18■□□□□ 0.02
TNFRSF1A-213ENST00000540022 VGLL3A8MV65 326 aa15.17■□□□□ 0.02
TNFRSF1A-213ENST00000540022 SNRPGP15A8MWD9 76 aa15.17■□□□□ 0.02
TNFRSF1A-213ENST00000540022 S1PR2O95136 353 aa15.17■□□□□ 0.02
TNFRSF1A-213ENST00000540022 CDS2O95674 445 aa15.17■□□□□ 0.02
TNFRSF1A-213ENST00000540022 IGKV1D-33P01593 117 aa15.17■□□□□ 0.02
TNFRSF1A-213ENST00000540022 IGKV1-33P01594 117 aa15.17■□□□□ 0.02
TNFRSF1A-213ENST00000540022 SNRNP70P08621 437 aaKnown RBP15.17■□□□□ 0.02
TNFRSF1A-213ENST00000540022 RRASP10301 218 aa15.17■□□□□ 0.02
TNFRSF1A-213ENST00000540022 BRS3P32247 399 aa15.17■□□□□ 0.02
TNFRSF1A-213ENST00000540022 LIN54Q6MZP7 749 aa15.17■□□□□ 0.02
TNFRSF1A-213ENST00000540022 PIFOQ8TCI5 191 aa15.17■□□□□ 0.02
TNFRSF1A-213ENST00000540022 MITD1Q8WV92 249 aa15.17■□□□□ 0.02
TNFRSF1A-213ENST00000540022 RITA1Q96K30 269 aa15.17■□□□□ 0.02
TNFRSF1A-213ENST00000540022 TMEM56Q96MV1 263 aa15.17■□□□□ 0.02
TNFRSF1A-213ENST00000540022 TMEM56-RWDD3S4R434 201 aa15.17■□□□□ 0.02
TNFRSF1A-213ENST00000540022 CREBL2O60519 120 aaPredicted RBP15.17■□□□□ 0.02
TNFRSF1A-213ENST00000540022 HPRT1P00492 218 aa15.17■□□□□ 0.02
TNFRSF1A-213ENST00000540022 FAM157CP0CG43 387 aa15.17■□□□□ 0.02
TNFRSF1A-213ENST00000540022 DYNLT3P51808 116 aa15.17■□□□□ 0.02
TNFRSF1A-213ENST00000540022 TUSC1Q2TAM9 212 aa15.17■□□□□ 0.02
TNFRSF1A-213ENST00000540022 TMEM177Q53S58 311 aa15.17■□□□□ 0.02
TNFRSF1A-213ENST00000540022 DHRS7BQ6IAN0 325 aaPredicted RBP15.17■□□□□ 0.02
TNFRSF1A-213ENST00000540022 FLYWCH2Q96CP2 140 aaKnown RBP15.17■□□□□ 0.02
TNFRSF1A-213ENST00000540022 MDFIQ99750 246 aa15.17■□□□□ 0.02
TNFRSF1A-213ENST00000540022 SSX3Q99909 188 aa15.17■□□□□ 0.02
TNFRSF1A-213ENST00000540022 PLEKHA2Q9HB19 425 aa15.17■□□□□ 0.02
TNFRSF1A-213ENST00000540022 EBI3Q14213 229 aa15.16■□□□□ 0.02
TNFRSF1A-213ENST00000540022 LRRC75BQ2VPJ9 315 aa15.16■□□□□ 0.02
TNFRSF1A-213ENST00000540022 TMEM268Q5VZI3 342 aa15.16■□□□□ 0.02
TNFRSF1A-213ENST00000540022 SELENOHQ8IZQ5 122 aaKnown RBP15.16■□□□□ 0.02
TNFRSF1A-213ENST00000540022 LGI3Q8N145 548 aa15.16■□□□□ 0.02
TNFRSF1A-213ENST00000540022 OR4C13Q8NGP0 309 aa15.16■□□□□ 0.02
TNFRSF1A-213ENST00000540022 EAF1Q96JC9 268 aaPredicted RBP15.16■□□□□ 0.02
TNFRSF1A-213ENST00000540022 SRRM4A7MD48 611 aaKnown RBP15.15■□□□□ 0.02
TNFRSF1A-213ENST00000540022 RPA2P15927 270 aa15.15■□□□□ 0.02
TNFRSF1A-213ENST00000540022 RPS16P62249 146 aaKnown RBP15.15■□□□□ 0.02
TNFRSF1A-213ENST00000540022 HES1Q14469 280 aa15.15■□□□□ 0.02
TNFRSF1A-213ENST00000540022 HNF4GQ14541 408 aa15.15■□□□□ 0.02
TNFRSF1A-213ENST00000540022 THNSL2Q86YJ6 484 aa15.15■□□□□ 0.02
TNFRSF1A-213ENST00000540022 ZNF695Q8IW36 515 aa15.15■□□□□ 0.02
TNFRSF1A-213ENST00000540022 C12orf45Q8N5I9 185 aaPredicted RBP15.15■□□□□ 0.02
TNFRSF1A-213ENST00000540022 LRTM2Q8N967 370 aa15.15■□□□□ 0.02
TNFRSF1A-213ENST00000540022 COQ8AQ8NI60 647 aa15.15■□□□□ 0.02
TNFRSF1A-213ENST00000540022 RBPMSQ93062 196 aaKnown RBP15.15■□□□□ 0.02
TNFRSF1A-213ENST00000540022 PHB2Q99623 299 aa15.15■□□□□ 0.02
TNFRSF1A-213ENST00000540022 OR51J1Q9H342 316 aa15.15■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms