RNA–Protein interactions for RNA: ENST00000533806.5

VPS28-216, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 650 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-216ENST00000533806 ZFP57Q9NU63 452 aa10.16□□□□□ -0.78
VPS28-216ENST00000533806 METTL1Q9UBP6 276 aaKnown RBP10.16□□□□□ -0.78
VPS28-216ENST00000533806 SCOCQ9UIL1 159 aa10.16□□□□□ -0.78
VPS28-216ENST00000533806 NUBP2Q9Y5Y2 271 aa10.16□□□□□ -0.78
VPS28-216ENST00000533806 A0A1W2PRX2 142 aa10.15□□□□□ -0.78
VPS28-216ENST00000533806 SLC25A17O43808 307 aa10.15□□□□□ -0.78
VPS28-216ENST00000533806 ELANEP08246 267 aa10.15□□□□□ -0.78
VPS28-216ENST00000533806 TAS2R46P59540 309 aa10.15□□□□□ -0.78
VPS28-216ENST00000533806 RPL23AP62750 156 aaKnown RBP10.15□□□□□ -0.78
VPS28-216ENST00000533806 PJVKQ0ZLH3 352 aa10.15□□□□□ -0.78
VPS28-216ENST00000533806 RTL8BQ17RB0 113 aa10.15□□□□□ -0.78
VPS28-216ENST00000533806 PPP1R27Q86WC6 154 aa10.15□□□□□ -0.78
VPS28-216ENST00000533806 LAX1Q8IWV1 398 aa10.15□□□□□ -0.78
VPS28-216ENST00000533806 MFSD4AQ8N468 514 aa10.15□□□□□ -0.78
VPS28-216ENST00000533806 OR4F17Q8NGA8 305 aa10.15□□□□□ -0.78
VPS28-216ENST00000533806 OSR1Q8TAX0 266 aaPredicted RBP10.15□□□□□ -0.78
VPS28-216ENST00000533806 R3HDM4Q96D70 268 aa10.15□□□□□ -0.78
VPS28-216ENST00000533806 OR4F4Q96R69 305 aa10.15□□□□□ -0.78
VPS28-216ENST00000533806 HSD17B10Q99714 261 aaKnown RBP10.15□□□□□ -0.78
VPS28-216ENST00000533806 NXF2Q9GZY0 626 aaKnown RBP10.15□□□□□ -0.78
VPS28-216ENST00000533806 EXTL2Q9UBQ6 330 aa10.15□□□□□ -0.78
VPS28-216ENST00000533806 WSB1Q9Y6I7 421 aa10.15□□□□□ -0.78
VPS28-216ENST00000533806 TRAV41A0A0B4J266 112 aa10.14□□□□□ -0.79
VPS28-216ENST00000533806 FAM25AB3EWG3 89 aa10.14□□□□□ -0.79
VPS28-216ENST00000533806 FAM25CB3EWG5 89 aa10.14□□□□□ -0.79
VPS28-216ENST00000533806 FAM25GB3EWG6 89 aa10.14□□□□□ -0.79
VPS28-216ENST00000533806 ARPC1BO15143 372 aaKnown RBP10.14□□□□□ -0.79
VPS28-216ENST00000533806 SOX15O60248 233 aa10.14□□□□□ -0.79
VPS28-216ENST00000533806 PMP2P02689 132 aa10.14□□□□□ -0.79
VPS28-216ENST00000533806 RPLP1P05386 114 aaKnown RBP10.14□□□□□ -0.79
VPS28-216ENST00000533806 VDAC1P21796 283 aa10.14□□□□□ -0.79
VPS28-216ENST00000533806 GNRHRP30968 328 aa10.14□□□□□ -0.79
VPS28-216ENST00000533806 RCVRNP35243 200 aa10.14□□□□□ -0.79
VPS28-216ENST00000533806 HRH1P35367 487 aa10.14□□□□□ -0.79
VPS28-216ENST00000533806 UBE2KP61086 200 aa10.14□□□□□ -0.79
VPS28-216ENST00000533806 ZNF66Q6ZN08 573 aa10.14□□□□□ -0.79
VPS28-216ENST00000533806 ETV3LQ6ZN32 361 aa10.14□□□□□ -0.79
VPS28-216ENST00000533806 C18orf65Q6ZTR6 163 aa10.14□□□□□ -0.79
VPS28-216ENST00000533806 KCTD9Q7L273 389 aa10.14□□□□□ -0.79
VPS28-216ENST00000533806 TEX45Q8NA69 505 aa10.14□□□□□ -0.79
VPS28-216ENST00000533806 ZBTB34Q8NCN2 500 aa10.14□□□□□ -0.79
VPS28-216ENST00000533806 SECTM1Q8WVN6 248 aa10.14□□□□□ -0.79
VPS28-216ENST00000533806 MOB3AQ96BX8 217 aa10.14□□□□□ -0.79
VPS28-216ENST00000533806 HARBI1Q96MB7 349 aa10.14□□□□□ -0.79
VPS28-216ENST00000533806 GPHA2Q96T91 129 aa10.14□□□□□ -0.79
VPS28-216ENST00000533806 SLC5A7Q9GZV3 580 aa10.14□□□□□ -0.79
VPS28-216ENST00000533806 PARP11Q9NR21 331 aa10.14□□□□□ -0.79
VPS28-216ENST00000533806 EHFQ9NZC4 300 aa10.14□□□□□ -0.79
VPS28-216ENST00000533806 KLK11Q9UBX7 282 aa10.14□□□□□ -0.79
VPS28-216ENST00000533806 PRELID3BQ9Y3B1 194 aa10.14□□□□□ -0.79
VPS28-216ENST00000533806 SHOXO15266 292 aa10.13□□□□□ -0.79
VPS28-216ENST00000533806 CRYZL1O95825 349 aa10.13□□□□□ -0.79
VPS28-216ENST00000533806 CA2P00918 260 aa10.13□□□□□ -0.79
VPS28-216ENST00000533806 HLA-DMAP28067 261 aa10.13□□□□□ -0.79
VPS28-216ENST00000533806 SLC6A1P30531 599 aa10.13□□□□□ -0.79
VPS28-216ENST00000533806 CDX1P47902 265 aaPredicted RBP10.13□□□□□ -0.79
VPS28-216ENST00000533806 PLGLAQ15195 96 aa10.13□□□□□ -0.79
VPS28-216ENST00000533806 AKIRIN2Q53H80 203 aa10.13□□□□□ -0.79
VPS28-216ENST00000533806 ZNF818PQ6ZRF7 136 aa10.13□□□□□ -0.79
VPS28-216ENST00000533806 LCNL1Q6ZST4 164 aa10.13□□□□□ -0.79
VPS28-216ENST00000533806 OR5H2Q8NGV7 314 aa10.13□□□□□ -0.79
VPS28-216ENST00000533806 OR52I2Q8NH67 350 aa10.13□□□□□ -0.79
VPS28-216ENST00000533806 CLCC1Q96S66 551 aa10.13□□□□□ -0.79
VPS28-216ENST00000533806 SOSTQ9BQB4 213 aa10.13□□□□□ -0.79
VPS28-216ENST00000533806 ZNF2Q9BSG1 426 aaPredicted RBP10.13□□□□□ -0.79
VPS28-216ENST00000533806 KLK15Q9H2R5 256 aa10.13□□□□□ -0.79
VPS28-216ENST00000533806 TAS2R8Q9NYW2 309 aa10.13□□□□□ -0.79
VPS28-216ENST00000533806 MTFP1Q9UDX5 166 aa10.13□□□□□ -0.79
VPS28-216ENST00000533806 DNAH3Q8TD57 4116 aa10.13□□□□□ -0.79
VPS28-216ENST00000533806 NOTCH3Q9UM47 2321 aa10.12□□□□□ -0.79
VPS28-216ENST00000533806 PLXNB1O43157 2135 aa10.12□□□□□ -0.79
VPS28-216ENST00000533806 ZNF701M0R085 212 aaPredicted RBP10.12□□□□□ -0.79
VPS28-216ENST00000533806 RGS5O15539 181 aa10.12□□□□□ -0.79
VPS28-216ENST00000533806 FCGR3BO75015 233 aa10.12□□□□□ -0.79
VPS28-216ENST00000533806 CBX3Q13185 183 aa10.12□□□□□ -0.79
VPS28-216ENST00000533806 CXorf66Q5JRM2 361 aaPredicted RBP10.12□□□□□ -0.79
VPS28-216ENST00000533806 VAX1Q5SQQ9 334 aa10.12□□□□□ -0.79
VPS28-216ENST00000533806 TCTEX1D1Q8N7M0 179 aa10.12□□□□□ -0.79
VPS28-216ENST00000533806 OR6F1Q8NGZ6 308 aa10.12□□□□□ -0.79
VPS28-216ENST00000533806 C15orf40Q8WUR7 153 aa10.12□□□□□ -0.79
VPS28-216ENST00000533806 P2RX4Q99571 388 aa10.12□□□□□ -0.79
VPS28-216ENST00000533806 CTDSPLO15194 276 aa10.11□□□□□ -0.79
VPS28-216ENST00000533806 RBFOX2O43251 390 aaKnown RBP eCLIP10.11□□□□□ -0.794e-8■■■■□ 26.4
VPS28-216ENST00000533806 TNFSF12O43508 249 aa10.11□□□□□ -0.79
VPS28-216ENST00000533806 RAMP3O60896 148 aa10.11□□□□□ -0.79
VPS28-216ENST00000533806 SAA1P0DJI8 122 aaPredicted RBP10.11□□□□□ -0.79
VPS28-216ENST00000533806 FXYD4P59646 89 aa10.11□□□□□ -0.79
VPS28-216ENST00000533806 FXYD3Q14802 87 aa10.11□□□□□ -0.79
VPS28-216ENST00000533806 PRSS8Q16651 343 aa10.11□□□□□ -0.79
VPS28-216ENST00000533806 OR2B11Q5JQS5 317 aa10.11□□□□□ -0.79
VPS28-216ENST00000533806 SAMD5Q5TGI4 173 aa10.11□□□□□ -0.79
VPS28-216ENST00000533806 ASPHD1Q5U4P2 390 aa10.11□□□□□ -0.79
VPS28-216ENST00000533806 AADACL3Q5VUY0 350 aa10.11□□□□□ -0.79
VPS28-216ENST00000533806 ZNF695Q8IW36 515 aa10.11□□□□□ -0.79
VPS28-216ENST00000533806 PUSL1Q8N0Z8 303 aaKnown RBP10.11□□□□□ -0.79
VPS28-216ENST00000533806 ZNF491Q8N8L2 437 aa10.11□□□□□ -0.79
VPS28-216ENST00000533806 LFNGQ8NES3 379 aa10.11□□□□□ -0.79
VPS28-216ENST00000533806 OR4S2Q8NH73 311 aa10.11□□□□□ -0.79
VPS28-216ENST00000533806 TCTEX1D2Q8WW35 142 aa10.11□□□□□ -0.79
VPS28-216ENST00000533806 ARPC1AQ92747 370 aa10.11□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms