RNA–Protein interactions for RNA: ENST00000526977.5

VPS28-207, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,036 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-207ENST00000526977 KRASP01116 189 aa15.48■□□□□ 0.07
VPS28-207ENST00000526977 P0C879 139 aa15.48■□□□□ 0.07
VPS28-207ENST00000526977 GNB2P62879 340 aa15.48■□□□□ 0.07
VPS28-207ENST00000526977 TUSC1Q2TAM9 212 aa15.48■□□□□ 0.07
VPS28-207ENST00000526977 OR10A7Q8NGE5 316 aa15.48■□□□□ 0.07
VPS28-207ENST00000526977 ZNF714Q96N38 554 aa15.48■□□□□ 0.07
VPS28-207ENST00000526977 GINS3Q9BRX5 216 aa15.48■□□□□ 0.07
VPS28-207ENST00000526977 TACC2O95359 2948 aa15.47■□□□□ 0.07
VPS28-207ENST00000526977 A0A1W2PPH5 198 aa15.47■□□□□ 0.07
VPS28-207ENST00000526977 ZNF705EA8MWA4 302 aaPredicted RBP15.47■□□□□ 0.07
VPS28-207ENST00000526977 KRBOX1C9JBD0 128 aa15.47■□□□□ 0.07
VPS28-207ENST00000526977 S1PR2O95136 353 aa15.47■□□□□ 0.07
VPS28-207ENST00000526977 G6PCP35575 357 aa15.47■□□□□ 0.07
VPS28-207ENST00000526977 NCR3LG1Q68D85 454 aa15.47■□□□□ 0.07
VPS28-207ENST00000526977 RAB40CQ96S21 281 aa15.47■□□□□ 0.07
VPS28-207ENST00000526977 NARFLQ9H6Q4 476 aa15.47■□□□□ 0.07
VPS28-207ENST00000526977 BEX4Q9NWD9 120 aaPredicted RBP15.47■□□□□ 0.07
VPS28-207ENST00000526977 GFOD1Q9NXC2 390 aa15.47■□□□□ 0.07
VPS28-207ENST00000526977 ITGB1BP1O14713 200 aa15.46■□□□□ 0.07
VPS28-207ENST00000526977 SYNGR2O43760 224 aa15.46■□□□□ 0.07
VPS28-207ENST00000526977 DUTP33316 252 aaKnown RBP15.46■□□□□ 0.07
VPS28-207ENST00000526977 SULT1A2P50226 295 aa15.46■□□□□ 0.07
VPS28-207ENST00000526977 ZNF273Q14593 569 aa15.46■□□□□ 0.07
VPS28-207ENST00000526977 C8orf46Q8TAG6 207 aa15.46■□□□□ 0.07
VPS28-207ENST00000526977 C10orf105Q8TEF2 133 aa15.46■□□□□ 0.07
VPS28-207ENST00000526977 LEAP2Q969E1 77 aa15.46■□□□□ 0.07
VPS28-207ENST00000526977 MARC2Q969Z3 335 aa15.46■□□□□ 0.07
VPS28-207ENST00000526977 SAT2Q96F10 170 aaPredicted RBP15.46■□□□□ 0.07
VPS28-207ENST00000526977 SSBP3Q9BWW4 388 aaPredicted RBP15.46■□□□□ 0.07
VPS28-207ENST00000526977 IFI27L2Q9H2X8 130 aa15.46■□□□□ 0.07
VPS28-207ENST00000526977 COA4Q9NYJ1 87 aa15.46■□□□□ 0.07
VPS28-207ENST00000526977 SLC31A2O15432 143 aa15.46■□□□□ 0.07
VPS28-207ENST00000526977 SCO1O75880 301 aa15.46■□□□□ 0.07
VPS28-207ENST00000526977 CST7O76096 145 aa15.46■□□□□ 0.07
VPS28-207ENST00000526977 CT45A1Q5HYN5 189 aa15.46■□□□□ 0.07
VPS28-207ENST00000526977 CT45A3Q8NHU0 189 aa15.46■□□□□ 0.07
VPS28-207ENST00000526977 SMIM8Q96KF7 97 aa15.46■□□□□ 0.07
VPS28-207ENST00000526977 IDI2-AS1Q9NZ38 188 aa15.46■□□□□ 0.07
VPS28-207ENST00000526977 CELSR2Q9HCU4 2923 aa15.45■□□□□ 0.06
VPS28-207ENST00000526977 IGHV2-5P01817 119 aa15.45■□□□□ 0.06
VPS28-207ENST00000526977 HEPN1Q6WQI6 88 aa15.45■□□□□ 0.06
VPS28-207ENST00000526977 STPG2Q8N412 459 aa15.45■□□□□ 0.06
VPS28-207ENST00000526977 RPUSD1Q9UJJ7 312 aaKnown RBP15.45■□□□□ 0.06
VPS28-207ENST00000526977 GAB2Q9UQC2 676 aa15.45■□□□□ 0.06
VPS28-207ENST00000526977 DSCAML1Q8TD84 2053 aa15.45■□□□□ 0.06
VPS28-207ENST00000526977 TOR1AO14656 332 aa15.44■□□□□ 0.06
VPS28-207ENST00000526977 ATG12O94817 140 aa15.44■□□□□ 0.06
VPS28-207ENST00000526977 SEC11BP0C7V7 166 aa15.44■□□□□ 0.06
VPS28-207ENST00000526977 SPP1P10451 314 aa15.44■□□□□ 0.06
VPS28-207ENST00000526977 RPL23AP62750 156 aaKnown RBP15.44■□□□□ 0.06
VPS28-207ENST00000526977 CLINT1Q14677 625 aa15.44■□□□□ 0.06
VPS28-207ENST00000526977 RPL39P5Q59GN2 51 aa15.44■□□□□ 0.06
VPS28-207ENST00000526977 C1orf229Q6ZS94 237 aaPredicted RBP15.44■□□□□ 0.06
VPS28-207ENST00000526977 RAB39BQ96DA2 213 aa15.44■□□□□ 0.06
VPS28-207ENST00000526977 WSB1Q9Y6I7 421 aa15.44■□□□□ 0.06
VPS28-207ENST00000526977 PPIAL4CA0A0B4J2A2 164 aa15.44■□□□□ 0.06
VPS28-207ENST00000526977 VWC2LB2RUY7 222 aa15.44■□□□□ 0.06
VPS28-207ENST00000526977 TXNL1O43396 289 aa15.44■□□□□ 0.06
VPS28-207ENST00000526977 MMP23AO75900 390 aa15.44■□□□□ 0.06
VPS28-207ENST00000526977 CRYZL1O95825 349 aa15.44■□□□□ 0.06
VPS28-207ENST00000526977 PPIAL4GP0DN37 164 aa15.44■□□□□ 0.06
VPS28-207ENST00000526977 DYNLT3P51808 116 aa15.44■□□□□ 0.06
VPS28-207ENST00000526977 BAXQ07812 192 aa15.44■□□□□ 0.06
VPS28-207ENST00000526977 LRRC75A-AS1Q8N1F1 130 aa15.44■□□□□ 0.06
VPS28-207ENST00000526977 OR5C1Q8NGR4 320 aa15.44■□□□□ 0.06
VPS28-207ENST00000526977 CLDND2Q8NHS1 167 aa15.44■□□□□ 0.06
VPS28-207ENST00000526977 CD300LFQ8TDQ1 290 aa15.44■□□□□ 0.06
VPS28-207ENST00000526977 FBN2P35556 2912 aa15.44■□□□□ 0.06
VPS28-207ENST00000526977 GCN1Q92616 2671 aaKnown RBP15.43■□□□□ 0.06
VPS28-207ENST00000526977 A0A1W2PPE3 182 aa15.43■□□□□ 0.06
VPS28-207ENST00000526977 RAB19A4D1S5 217 aa15.43■□□□□ 0.06
VPS28-207ENST00000526977 FAM90A26D6RGX4 464 aa15.43■□□□□ 0.06
VPS28-207ENST00000526977 M0R1X1 148 aa15.43■□□□□ 0.06
VPS28-207ENST00000526977 CCL3L1P16619 93 aa15.43■□□□□ 0.06
VPS28-207ENST00000526977 RAB7AP51149 207 aa15.43■□□□□ 0.06
VPS28-207ENST00000526977 DEFB113Q30KQ7 82 aa15.43■□□□□ 0.06
VPS28-207ENST00000526977 MIDNQ504T8 468 aa15.43■□□□□ 0.06
VPS28-207ENST00000526977 HIST2H2BCQ6DN03 193 aa15.43■□□□□ 0.06
VPS28-207ENST00000526977 LY6G5BQ8NDX9 201 aa15.43■□□□□ 0.06
VPS28-207ENST00000526977 ABHD14AQ9BUJ0 271 aa15.43■□□□□ 0.06
VPS28-207ENST00000526977 NUP50Q9UKX7 468 aa15.43■□□□□ 0.06
VPS28-207ENST00000526977 MALRD1Q5VYJ5 2156 aa15.43■□□□□ 0.06
VPS28-207ENST00000526977 CENPEQ02224 2701 aa15.43■□□□□ 0.06
VPS28-207ENST00000526977 PTPN13Q12923 2485 aa15.43■□□□□ 0.06
VPS28-207ENST00000526977 LOC105371242A0A075B767 164 aa15.43■□□□□ 0.06
VPS28-207ENST00000526977 H3BP45 60 aa15.43■□□□□ 0.06
VPS28-207ENST00000526977 RAB29O14966 203 aa15.43■□□□□ 0.06
VPS28-207ENST00000526977 MED6O75586 246 aa15.43■□□□□ 0.06
VPS28-207ENST00000526977 IAPPP10997 89 aa15.43■□□□□ 0.06
VPS28-207ENST00000526977 NFYBP25208 207 aa15.43■□□□□ 0.06
VPS28-207ENST00000526977 LMO4P61968 165 aa15.43■□□□□ 0.06
VPS28-207ENST00000526977 TMEM217Q8N7C4 229 aa15.43■□□□□ 0.06
VPS28-207ENST00000526977 HSD17B11Q8NBQ5 300 aa15.43■□□□□ 0.06
VPS28-207ENST00000526977 SH3BGRL3Q9H299 93 aa15.43■□□□□ 0.06
VPS28-207ENST00000526977 CTNNBIP1Q9NSA3 81 aaPredicted RBP15.43■□□□□ 0.06
VPS28-207ENST00000526977 LIPFP07098 398 aa15.42■□□□□ 0.06
VPS28-207ENST00000526977 DLX6P56179 175 aa15.42■□□□□ 0.06
VPS28-207ENST00000526977 UBE2KP61086 200 aa15.42■□□□□ 0.06
VPS28-207ENST00000526977 PXDC1Q5TGL8 231 aa15.42■□□□□ 0.06
VPS28-207ENST00000526977 ZNF439Q8NDP4 499 aa15.42■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms