RNA–Protein interactions for RNA: ENST00000507401.2

SCN1A-207, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 3

Gene SCN1A, Length 711 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-207ENST00000507401 AKR1C2P52895 323 aa6.59□□□□□ -1.35
SCN1A-207ENST00000507401 RPL15P61313 204 aaKnown RBP6.59□□□□□ -1.35
SCN1A-207ENST00000507401 ARF6P62330 175 aa6.59□□□□□ -1.35
SCN1A-207ENST00000507401 GNG3P63215 75 aa6.59□□□□□ -1.35
SCN1A-207ENST00000507401 HOXA4Q00056 320 aaPredicted RBP6.59□□□□□ -1.35
SCN1A-207ENST00000507401 AKR1C1Q04828 323 aa6.59□□□□□ -1.35
SCN1A-207ENST00000507401 PPP1R1AQ13522 171 aa6.59□□□□□ -1.35
SCN1A-207ENST00000507401 COTL1Q14019 142 aa6.59□□□□□ -1.35
SCN1A-207ENST00000507401 RBM39Q14498 530 aaKnown RBP6.59□□□□□ -1.35
SCN1A-207ENST00000507401 DEFB112Q30KQ8 113 aa6.59□□□□□ -1.35
SCN1A-207ENST00000507401 C2orf76Q3KRA6 126 aa6.59□□□□□ -1.35
SCN1A-207ENST00000507401 LRRC10Q5BKY1 277 aa6.59□□□□□ -1.35
SCN1A-207ENST00000507401 COA6Q5JTJ3 125 aaKnown RBP6.59□□□□□ -1.35
SCN1A-207ENST00000507401 WDR38Q5JTN6 314 aa6.59□□□□□ -1.35
SCN1A-207ENST00000507401 C1orf100Q5SVJ3 147 aa6.59□□□□□ -1.35
SCN1A-207ENST00000507401 STUMQ69YW2 141 aa6.59□□□□□ -1.35
SCN1A-207ENST00000507401 FAAP20Q6NZ36 180 aa6.59□□□□□ -1.35
SCN1A-207ENST00000507401 DPPA3Q6W0C5 159 aa6.59□□□□□ -1.35
SCN1A-207ENST00000507401 ZNF788Q6ZQV5 615 aa6.59□□□□□ -1.35
SCN1A-207ENST00000507401 Q6ZSR3 168 aa6.59□□□□□ -1.35
SCN1A-207ENST00000507401 HIST3H2BBQ8N257 126 aa6.59□□□□□ -1.35
SCN1A-207ENST00000507401 OR13C8Q8NGS7 320 aa6.59□□□□□ -1.35
SCN1A-207ENST00000507401 C8orf46Q8TAG6 207 aa6.59□□□□□ -1.35
SCN1A-207ENST00000507401 HPSE2Q8WWQ2 592 aa6.59□□□□□ -1.35
SCN1A-207ENST00000507401 AQP3Q92482 292 aa6.59□□□□□ -1.35
SCN1A-207ENST00000507401 TMEM106AQ96A25 262 aa6.59□□□□□ -1.35
SCN1A-207ENST00000507401 MISP3Q96FF7 219 aa6.59□□□□□ -1.35
SCN1A-207ENST00000507401 AKR1E2Q96JD6 320 aa6.59□□□□□ -1.35
SCN1A-207ENST00000507401 CCL13Q99616 98 aa6.59□□□□□ -1.35
SCN1A-207ENST00000507401 RNF126Q9BV68 326 aa6.59□□□□□ -1.35
SCN1A-207ENST00000507401 SELENOIQ9C0D9 397 aa6.59□□□□□ -1.35
SCN1A-207ENST00000507401 CTDSP1Q9GZU7 261 aa6.59□□□□□ -1.35
SCN1A-207ENST00000507401 SIRPDQ9H106 197 aa6.59□□□□□ -1.35
SCN1A-207ENST00000507401 OR51I2Q9H344 312 aa6.59□□□□□ -1.35
SCN1A-207ENST00000507401 MOB1AQ9H8S9 216 aa6.59□□□□□ -1.35
SCN1A-207ENST00000507401 GPR84Q9NQS5 396 aa6.59□□□□□ -1.35
SCN1A-207ENST00000507401 ANAPC10Q9UM13 185 aa6.59□□□□□ -1.35
SCN1A-207ENST00000507401 RNF114Q9Y508 228 aa6.59□□□□□ -1.35
SCN1A-207ENST00000507401 MMP24Q9Y5R2 645 aa6.59□□□□□ -1.35
SCN1A-207ENST00000507401 TRBV23-1A0A0A0MS06 115 aa6.58□□□□□ -1.36
SCN1A-207ENST00000507401 IGHV1-69DA0A0B4J2H0 117 aa6.58□□□□□ -1.36
SCN1A-207ENST00000507401 A0A1B0GUS0 222 aa6.58□□□□□ -1.36
SCN1A-207ENST00000507401 MARCH11A6NNE9 402 aa6.58□□□□□ -1.36
SCN1A-207ENST00000507401 ZNF732B4DXR9 585 aa6.58□□□□□ -1.36
SCN1A-207ENST00000507401 LDLRAD4O15165 306 aa6.58□□□□□ -1.36
SCN1A-207ENST00000507401 HOXA3O43365 443 aaPredicted RBP6.58□□□□□ -1.36
SCN1A-207ENST00000507401 SRSF10O75494 262 aaKnown RBP6.58□□□□□ -1.36
SCN1A-207ENST00000507401 DHRS3O75911 302 aa6.58□□□□□ -1.36
SCN1A-207ENST00000507401 SFT2D2O95562 160 aa6.58□□□□□ -1.36
SCN1A-207ENST00000507401 BPNT1O95861 308 aa6.58□□□□□ -1.36
SCN1A-207ENST00000507401 IGHV1-69P01742 117 aa6.58□□□□□ -1.36
SCN1A-207ENST00000507401 HBE1P02100 147 aa6.58□□□□□ -1.36
SCN1A-207ENST00000507401 SFTPBP07988 381 aa6.58□□□□□ -1.36
SCN1A-207ENST00000507401 AMY2BP19961 511 aa6.58□□□□□ -1.36
SCN1A-207ENST00000507401 LPAR6P43657 344 aa6.58□□□□□ -1.36
SCN1A-207ENST00000507401 RPS10P46783 165 aaKnown RBP6.58□□□□□ -1.36
SCN1A-207ENST00000507401 RANP62826 216 aaKnown RBP6.58□□□□□ -1.36
SCN1A-207ENST00000507401 USF2Q15853 346 aaPredicted RBP6.58□□□□□ -1.36
SCN1A-207ENST00000507401 SAPCD1Q5SSQ6 148 aa6.58□□□□□ -1.36
SCN1A-207ENST00000507401 TMEM42Q69YG0 159 aa6.58□□□□□ -1.36
SCN1A-207ENST00000507401 BRD3OSQ6XYD6 125 aa6.58□□□□□ -1.36
SCN1A-207ENST00000507401 Q6ZRG5 221 aa6.58□□□□□ -1.36
SCN1A-207ENST00000507401 HOGA1Q86XE5 327 aa6.58□□□□□ -1.36
SCN1A-207ENST00000507401 FAM24BQ8N5W8 94 aa6.58□□□□□ -1.36
SCN1A-207ENST00000507401 KIR3DL3Q8N743 410 aa6.58□□□□□ -1.36
SCN1A-207ENST00000507401 ZSCAN4Q8NAM6 433 aaPredicted RBP6.58□□□□□ -1.36
SCN1A-207ENST00000507401 SUMF2Q8NBJ7 301 aa6.58□□□□□ -1.36
SCN1A-207ENST00000507401 CCDC54Q8NEL0 328 aa6.58□□□□□ -1.36
SCN1A-207ENST00000507401 OR10D4PQ8NGN7 298 aa6.58□□□□□ -1.36
SCN1A-207ENST00000507401 OR51E1Q8TCB6 317 aa6.58□□□□□ -1.36
SCN1A-207ENST00000507401 RGP1Q92546 391 aaPredicted RBP6.58□□□□□ -1.36
SCN1A-207ENST00000507401 FAM46BQ96A09 425 aa6.58□□□□□ -1.36
SCN1A-207ENST00000507401 RBMXL1Q96E39 390 aaKnown RBP6.58□□□□□ -1.36
SCN1A-207ENST00000507401 ACY3Q96HD9 319 aa6.58□□□□□ -1.36
SCN1A-207ENST00000507401 DCTN5Q9BTE1 182 aa6.58□□□□□ -1.36
SCN1A-207ENST00000507401 CHST6Q9GZX3 395 aa6.58□□□□□ -1.36
SCN1A-207ENST00000507401 CST11Q9H112 138 aa6.58□□□□□ -1.36
SCN1A-207ENST00000507401 SPACA1Q9HBV2 294 aa6.58□□□□□ -1.36
SCN1A-207ENST00000507401 ZNF230Q9UIE0 474 aaPredicted RBP6.58□□□□□ -1.36
SCN1A-207ENST00000507401 VAX2Q9UIW0 290 aa6.58□□□□□ -1.36
SCN1A-207ENST00000507401 IKZF2Q9UKS7 526 aa6.58□□□□□ -1.36
SCN1A-207ENST00000507401 VSIG4Q9Y279 399 aa6.58□□□□□ -1.36
SCN1A-207ENST00000507401 PIGLQ9Y2B2 252 aa6.58□□□□□ -1.36
SCN1A-207ENST00000507401 SOX21Q9Y651 276 aaPredicted RBP6.58□□□□□ -1.36
SCN1A-207ENST00000507401 R4GMQ9 66 aa6.58□□□□□ -1.36
SCN1A-207ENST00000507401 PKD1L1Q8TDX9 2849 aa6.58□□□□□ -1.36
SCN1A-207ENST00000507401 TRBV24-1A0A075B6N3 115 aa6.57□□□□□ -1.36
SCN1A-207ENST00000507401 A0A1W2PPE3 182 aa6.57□□□□□ -1.36
SCN1A-207ENST00000507401 A0A1W2PPK0 400 aa6.57□□□□□ -1.36
SCN1A-207ENST00000507401 NKX6-3A6NJ46 265 aa6.57□□□□□ -1.36
SCN1A-207ENST00000507401 PRR32B1ATL7 298 aa6.57□□□□□ -1.36
SCN1A-207ENST00000507401 E5RGE8 158 aa6.57□□□□□ -1.36
SCN1A-207ENST00000507401 K7EPK0 472 aa6.57□□□□□ -1.36
SCN1A-207ENST00000507401 CA11O75493 328 aa6.57□□□□□ -1.36
SCN1A-207ENST00000507401 NRASP01111 189 aa6.57□□□□□ -1.36
SCN1A-207ENST00000507401 IFNA21P01568 189 aa6.57□□□□□ -1.36
SCN1A-207ENST00000507401 TTRP02766 147 aa6.57□□□□□ -1.36
SCN1A-207ENST00000507401 OPN1MWP04001 364 aa6.57□□□□□ -1.36
SCN1A-207ENST00000507401 HSPB1P04792 205 aaKnown RBP6.57□□□□□ -1.36
SCN1A-207ENST00000507401 HCKP08631 526 aa6.57□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 51.5 ms