RNA–Protein interactions for RNA: ENST00000498473.6

MSH5-SAPCD1-208, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MSH5-SAPCD1, Length 2,216 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-208ENST00000498473 OR2D2Q9H210 308 aa13.47□□□□□ -0.25
MSH5-SAPCD1-208ENST00000498473 TMEM210A6NLX4 147 aa13.47□□□□□ -0.25
MSH5-SAPCD1-208ENST00000498473 K7EM74 188 aa13.47□□□□□ -0.25
MSH5-SAPCD1-208ENST00000498473 CLDN1O95832 211 aa13.47□□□□□ -0.25
MSH5-SAPCD1-208ENST00000498473 CD55P08174 381 aa13.47□□□□□ -0.25
MSH5-SAPCD1-208ENST00000498473 G6PCP35575 357 aa13.47□□□□□ -0.25
MSH5-SAPCD1-208ENST00000498473 UBE2NP61088 152 aaKnown RBP13.47□□□□□ -0.25
MSH5-SAPCD1-208ENST00000498473 RPP30P78346 268 aaKnown RBP13.47□□□□□ -0.25
MSH5-SAPCD1-208ENST00000498473 Q6ZR03 302 aa13.47□□□□□ -0.25
MSH5-SAPCD1-208ENST00000498473 ZBTB34Q8NCN2 500 aa13.47□□□□□ -0.25
MSH5-SAPCD1-208ENST00000498473 KCNIP1Q9NZI2 227 aa13.47□□□□□ -0.25
MSH5-SAPCD1-208ENST00000498473 TIMM9Q9Y5J7 89 aa13.47□□□□□ -0.25
MSH5-SAPCD1-208ENST00000498473 PMS2P5A8MQ11 134 aa13.46□□□□□ -0.25
MSH5-SAPCD1-208ENST00000498473 CEBPZOSA8MTT3 80 aa13.46□□□□□ -0.25
MSH5-SAPCD1-208ENST00000498473 A8MWP6 167 aa13.46□□□□□ -0.25
MSH5-SAPCD1-208ENST00000498473 KRASP01116 189 aa13.46□□□□□ -0.25
MSH5-SAPCD1-208ENST00000498473 TFF1P04155 84 aa13.46□□□□□ -0.25
MSH5-SAPCD1-208ENST00000498473 GNG10P50151 68 aa13.46□□□□□ -0.25
MSH5-SAPCD1-208ENST00000498473 PMP22Q01453 160 aa13.46□□□□□ -0.25
MSH5-SAPCD1-208ENST00000498473 ZNF816Q0VGE8 651 aaPredicted RBP13.46□□□□□ -0.25
MSH5-SAPCD1-208ENST00000498473 WDR25Q64LD2 544 aaPredicted RBP13.46□□□□□ -0.25
MSH5-SAPCD1-208ENST00000498473 SLC35E4Q6ICL7 350 aa13.46□□□□□ -0.25
MSH5-SAPCD1-208ENST00000498473 ACSM6Q6P461 480 aa13.46□□□□□ -0.25
MSH5-SAPCD1-208ENST00000498473 FDCSPQ8NFU4 85 aa13.46□□□□□ -0.25
MSH5-SAPCD1-208ENST00000498473 OR10D4PQ8NGN7 298 aa13.46□□□□□ -0.25
MSH5-SAPCD1-208ENST00000498473 OR13D1Q8NGV5 346 aa13.46□□□□□ -0.25
MSH5-SAPCD1-208ENST00000498473 KLF14Q8TD94 323 aaPredicted RBP13.46□□□□□ -0.25
MSH5-SAPCD1-208ENST00000498473 GALMQ96C23 342 aa13.46□□□□□ -0.25
MSH5-SAPCD1-208ENST00000498473 COQ2Q96H96 371 aa13.46□□□□□ -0.25
MSH5-SAPCD1-208ENST00000498473 ODAMA1E959 279 aa13.45□□□□□ -0.26
MSH5-SAPCD1-208ENST00000498473 AESQ08117 197 aa13.45□□□□□ -0.26
MSH5-SAPCD1-208ENST00000498473 CXorf67Q86X51 503 aaPredicted RBP13.45□□□□□ -0.26
MSH5-SAPCD1-208ENST00000498473 GCNT2Q8N0V5 402 aa13.45□□□□□ -0.26
MSH5-SAPCD1-208ENST00000498473 ZNF808Q8N4W9 903 aaPredicted RBP13.45□□□□□ -0.26
MSH5-SAPCD1-208ENST00000498473 ABHD5Q8WTS1 349 aa13.45□□□□□ -0.26
MSH5-SAPCD1-208ENST00000498473 ZCCHC14Q8WYQ9 949 aaKnown RBP13.45□□□□□ -0.26
MSH5-SAPCD1-208ENST00000498473 FAM210BQ96KR6 192 aa13.45□□□□□ -0.26
MSH5-SAPCD1-208ENST00000498473 GOLT1BQ9Y3E0 138 aa13.45□□□□□ -0.26
MSH5-SAPCD1-208ENST00000498473 COL6A6A6NMZ7 2263 aa13.45□□□□□ -0.26
MSH5-SAPCD1-208ENST00000498473 ELOA3CA0A087WX78 387 aaPredicted RBP13.45□□□□□ -0.26
MSH5-SAPCD1-208ENST00000498473 LRRC30A6NM36 301 aa13.45□□□□□ -0.26
MSH5-SAPCD1-208ENST00000498473 C17orf98A8MV24 154 aa13.45□□□□□ -0.26
MSH5-SAPCD1-208ENST00000498473 CLDN34H7C241 214 aa13.45□□□□□ -0.26
MSH5-SAPCD1-208ENST00000498473 PHOX2AO14813 284 aa13.45□□□□□ -0.26
MSH5-SAPCD1-208ENST00000498473 ZNF737O75373 536 aa13.45□□□□□ -0.26
MSH5-SAPCD1-208ENST00000498473 S1PR2O95136 353 aa13.45□□□□□ -0.26
MSH5-SAPCD1-208ENST00000498473 HBZP02008 142 aa13.45□□□□□ -0.26
MSH5-SAPCD1-208ENST00000498473 G0S2P27469 103 aa13.45□□□□□ -0.26
MSH5-SAPCD1-208ENST00000498473 ARG2P78540 354 aa13.45□□□□□ -0.26
MSH5-SAPCD1-208ENST00000498473 CLCF1Q9UBD9 225 aa13.45□□□□□ -0.26
MSH5-SAPCD1-208ENST00000498473 CLN8Q9UBY8 286 aa13.45□□□□□ -0.26
MSH5-SAPCD1-208ENST00000498473 OOEPA6NGQ2 149 aa13.44□□□□□ -0.26
MSH5-SAPCD1-208ENST00000498473 IL2RGP31785 369 aa13.44□□□□□ -0.26
MSH5-SAPCD1-208ENST00000498473 TGFBR3Q03167 851 aa13.44□□□□□ -0.26
MSH5-SAPCD1-208ENST00000498473 DOCK11Q5JSL3 2073 aa13.44□□□□□ -0.26
MSH5-SAPCD1-208ENST00000498473 INO80CQ6PI98 192 aaPredicted RBP13.44□□□□□ -0.26
MSH5-SAPCD1-208ENST00000498473 IGSF10Q6WRI0 2623 aa13.44□□□□□ -0.26
MSH5-SAPCD1-208ENST00000498473 LHX4Q969G2 390 aa13.44□□□□□ -0.26
MSH5-SAPCD1-208ENST00000498473 PRO1933Q9H354 126 aa13.44□□□□□ -0.26
MSH5-SAPCD1-208ENST00000498473 OBP2BQ9NPH6 170 aa13.44□□□□□ -0.26
MSH5-SAPCD1-208ENST00000498473 SLC39A9Q9NUM3 307 aa13.44□□□□□ -0.26
MSH5-SAPCD1-208ENST00000498473 WISP2O76076 250 aa13.44□□□□□ -0.26
MSH5-SAPCD1-208ENST00000498473 MSMO1Q15800 293 aa13.44□□□□□ -0.26
MSH5-SAPCD1-208ENST00000498473 GFI1BQ5VTD9 330 aa13.44□□□□□ -0.26
MSH5-SAPCD1-208ENST00000498473 FAM180AQ6UWF9 173 aa13.44□□□□□ -0.26
MSH5-SAPCD1-208ENST00000498473 C1orf87Q8N0U7 546 aa13.44□□□□□ -0.26
MSH5-SAPCD1-208ENST00000498473 FRZBQ92765 325 aa13.44□□□□□ -0.26
MSH5-SAPCD1-208ENST00000498473 CACNA1DQ01668 2161 aa13.44□□□□□ -0.26
MSH5-SAPCD1-208ENST00000498473 IFNA1P01562 189 aa13.43□□□□□ -0.26
MSH5-SAPCD1-208ENST00000498473 TRGC1P0CF51 173 aa13.43□□□□□ -0.26
MSH5-SAPCD1-208ENST00000498473 GUSBP1Q15486 140 aa13.43□□□□□ -0.26
MSH5-SAPCD1-208ENST00000498473 ACP7Q6ZNF0 438 aa13.43□□□□□ -0.26
MSH5-SAPCD1-208ENST00000498473 CTNNBIP1Q9NSA3 81 aaPredicted RBP13.43□□□□□ -0.26
MSH5-SAPCD1-208ENST00000498473 METRNQ9UJH8 293 aa13.43□□□□□ -0.26
MSH5-SAPCD1-208ENST00000498473 PRR14LQ5THK1 2151 aa13.43□□□□□ -0.26
MSH5-SAPCD1-208ENST00000498473 ZNF891A8MT65 544 aaPredicted RBP13.43□□□□□ -0.26
MSH5-SAPCD1-208ENST00000498473 DLEU1O43261 78 aa13.43□□□□□ -0.26
MSH5-SAPCD1-208ENST00000498473 ZG16O60844 167 aa13.43□□□□□ -0.26
MSH5-SAPCD1-208ENST00000498473 AGFG2O95081 481 aa13.43□□□□□ -0.26
MSH5-SAPCD1-208ENST00000498473 SOD3P08294 240 aa13.43□□□□□ -0.26
MSH5-SAPCD1-208ENST00000498473 LINC00205P59089 165 aa13.43□□□□□ -0.26
MSH5-SAPCD1-208ENST00000498473 ATP6V1FQ16864 119 aa13.43□□□□□ -0.26
MSH5-SAPCD1-208ENST00000498473 BTNL3Q6UXE8 466 aa13.43□□□□□ -0.26
MSH5-SAPCD1-208ENST00000498473 Q6ZT83 130 aa13.43□□□□□ -0.26
MSH5-SAPCD1-208ENST00000498473 WDR31Q8NA23 367 aa13.43□□□□□ -0.26
MSH5-SAPCD1-208ENST00000498473 TMEM178AQ8NBL3 297 aa13.43□□□□□ -0.26
MSH5-SAPCD1-208ENST00000498473 PRR7Q8TB68 274 aa13.43□□□□□ -0.26
MSH5-SAPCD1-208ENST00000498473 MRGPRDQ8TDS7 321 aa13.43□□□□□ -0.26
MSH5-SAPCD1-208ENST00000498473 AGMATQ9BSE5 352 aa13.43□□□□□ -0.26
MSH5-SAPCD1-208ENST00000498473 TMEM147Q9BVK8 224 aa13.43□□□□□ -0.26
MSH5-SAPCD1-208ENST00000498473 TRBV24-1A0A075B6N3 115 aa13.42□□□□□ -0.26
MSH5-SAPCD1-208ENST00000498473 PRAMEF6Q5VXH4 476 aa13.42□□□□□ -0.26
MSH5-SAPCD1-208ENST00000498473 WDR82Q6UXN9 313 aa13.42□□□□□ -0.26
MSH5-SAPCD1-208ENST00000498473 FAM214BQ7L5A3 538 aa13.42□□□□□ -0.26
MSH5-SAPCD1-208ENST00000498473 HIST3H2BBQ8N257 126 aa13.42□□□□□ -0.26
MSH5-SAPCD1-208ENST00000498473 ZDHHC16Q969W1 377 aa13.42□□□□□ -0.26
MSH5-SAPCD1-208ENST00000498473 RAB29O14966 203 aa13.41□□□□□ -0.26
MSH5-SAPCD1-208ENST00000498473 HMGB3O15347 200 aaKnown RBP13.41□□□□□ -0.26
MSH5-SAPCD1-208ENST00000498473 IGKV3-15P01624 115 aa13.41□□□□□ -0.26
MSH5-SAPCD1-208ENST00000498473 ZNF25P17030 456 aaPredicted RBP13.41□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms