RNA–Protein interactions for RNA: ENST00000497026.5

CSMD3-208, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 1 (best)

Gene CSMD3, Length 1,406 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-208ENST00000497026 FAAP24Q9BTP7 215 aa4.11□□□□□ -1.75
CSMD3-208ENST00000497026 PLK3Q9H4B4 646 aa4.11□□□□□ -1.75
CSMD3-208ENST00000497026 AAMDCQ9H7C9 122 aa4.11□□□□□ -1.75
CSMD3-208ENST00000497026 SEPSECSQ9HD40 501 aaKnown RBP4.11□□□□□ -1.75
CSMD3-208ENST00000497026 DNAJC4Q9NNZ3 241 aa4.11□□□□□ -1.75
CSMD3-208ENST00000497026 MSRB1Q9NZV6 116 aa4.11□□□□□ -1.75
CSMD3-208ENST00000497026 VAX2Q9UIW0 290 aa4.11□□□□□ -1.75
CSMD3-208ENST00000497026 PUS1Q9Y606 427 aaKnown RBP eCLIP4.11□□□□□ -1.75
CSMD3-208ENST00000497026 ANK3Q12955 4377 aaKnown RBP4.1□□□□□ -1.75
CSMD3-208ENST00000497026 TEP1Q99973 2627 aaKnown RBP4.1□□□□□ -1.75
CSMD3-208ENST00000497026 IGHV4-30-2A0A087WSY4 118 aa4.1□□□□□ -1.75
CSMD3-208ENST00000497026 TRAV39A0A0B4J263 110 aa4.1□□□□□ -1.75
CSMD3-208ENST00000497026 IGLV5-39A0A0G2JS06 123 aa4.1□□□□□ -1.75
CSMD3-208ENST00000497026 A0A1W2PPK0 400 aa4.1□□□□□ -1.75
CSMD3-208ENST00000497026 PRSS37A4D1T9 235 aa4.1□□□□□ -1.75
CSMD3-208ENST00000497026 LDLRAD4O15165 306 aa4.1□□□□□ -1.75
CSMD3-208ENST00000497026 DOK2O60496 412 aa4.1□□□□□ -1.75
CSMD3-208ENST00000497026 MPZL1O95297 269 aa4.1□□□□□ -1.75
CSMD3-208ENST00000497026 TXNDC12O95881 172 aa4.1□□□□□ -1.75
CSMD3-208ENST00000497026 IFNA21P01568 189 aa4.1□□□□□ -1.75
CSMD3-208ENST00000497026 HBE1P02100 147 aa4.1□□□□□ -1.75
CSMD3-208ENST00000497026 AMBPP02760 352 aa4.1□□□□□ -1.75
CSMD3-208ENST00000497026 TRGC2P03986 189 aa4.1□□□□□ -1.75
CSMD3-208ENST00000497026 IFNA6P05013 189 aa4.1□□□□□ -1.75
CSMD3-208ENST00000497026 OR13C7P0DN81 318 aa4.1□□□□□ -1.75
CSMD3-208ENST00000497026 GLRXP35754 106 aa4.1□□□□□ -1.75
CSMD3-208ENST00000497026 CDKN2AP42771 156 aaKnown RBP4.1□□□□□ -1.75
CSMD3-208ENST00000497026 RPL29P47914 159 aaKnown RBP4.1□□□□□ -1.75
CSMD3-208ENST00000497026 GLIPR1P48060 266 aa4.1□□□□□ -1.75
CSMD3-208ENST00000497026 S100A10P60903 97 aa4.1□□□□□ -1.75
CSMD3-208ENST00000497026 ERVS71-1P61550 626 aa4.1□□□□□ -1.75
CSMD3-208ENST00000497026 RPS11P62280 158 aaKnown RBP eCLIP4.1□□□□□ -1.75
CSMD3-208ENST00000497026 VAMP2P63027 116 aa4.1□□□□□ -1.75
CSMD3-208ENST00000497026 RPL19P84098 196 aaKnown RBP4.1□□□□□ -1.75
CSMD3-208ENST00000497026 PSG4Q00888 419 aa4.1□□□□□ -1.75
CSMD3-208ENST00000497026 OR5I1Q13606 314 aa4.1□□□□□ -1.75
CSMD3-208ENST00000497026 CRMP1Q14194 572 aa4.1□□□□□ -1.75
CSMD3-208ENST00000497026 TMEM241Q24JQ0 296 aa4.1□□□□□ -1.75
CSMD3-208ENST00000497026 ODF3L2Q3SX64 289 aa4.1□□□□□ -1.75
CSMD3-208ENST00000497026 COA6Q5JTJ3 125 aaKnown RBP4.1□□□□□ -1.75
CSMD3-208ENST00000497026 LCE1EQ5T753 118 aa4.1□□□□□ -1.75
CSMD3-208ENST00000497026 FAM27BQ5VT28 67 aa4.1□□□□□ -1.75
CSMD3-208ENST00000497026 FAM90A2PQ658T7 463 aa4.1□□□□□ -1.75
CSMD3-208ENST00000497026 RPL7L1Q6DKI1 246 aaKnown RBP4.1□□□□□ -1.75
CSMD3-208ENST00000497026 OR8G2PQ6IF36 304 aa4.1□□□□□ -1.75
CSMD3-208ENST00000497026 LEG1Q6P5S2 330 aa4.1□□□□□ -1.75
CSMD3-208ENST00000497026 DPY19L2P2Q6ZN68 376 aa4.1□□□□□ -1.75
CSMD3-208ENST00000497026 Q71RC1 249 aaPredicted RBP4.1□□□□□ -1.75
CSMD3-208ENST00000497026 LRP11Q86VZ4 500 aa4.1□□□□□ -1.75
CSMD3-208ENST00000497026 ZNF679Q8IYX0 411 aa4.1□□□□□ -1.75
CSMD3-208ENST00000497026 FAM185AQ8N0U4 392 aa4.1□□□□□ -1.75
CSMD3-208ENST00000497026 ZCCHC24Q8N2G6 241 aaKnown RBP4.1□□□□□ -1.75
CSMD3-208ENST00000497026 C11orf42Q8N5U0 333 aa4.1□□□□□ -1.75
CSMD3-208ENST00000497026 ZNF525Q8N782 197 aa4.1□□□□□ -1.75
CSMD3-208ENST00000497026 MAPK1IP1LQ8NDC0 245 aa4.1□□□□□ -1.75
CSMD3-208ENST00000497026 ORAOV1Q8WV07 137 aa4.1□□□□□ -1.75
CSMD3-208ENST00000497026 RGP1Q92546 391 aaPredicted RBP4.1□□□□□ -1.75
CSMD3-208ENST00000497026 BTF3L4Q96K17 158 aa4.1□□□□□ -1.75
CSMD3-208ENST00000497026 POM121L2Q96KW2 1035 aa4.1□□□□□ -1.75
CSMD3-208ENST00000497026 C2orf50Q96LR7 162 aa4.1□□□□□ -1.75
CSMD3-208ENST00000497026 FOXN4Q96NZ1 517 aa4.1□□□□□ -1.75
CSMD3-208ENST00000497026 TSSK2Q96PF2 358 aa4.1□□□□□ -1.75
CSMD3-208ENST00000497026 VPS25Q9BRG1 176 aa4.1□□□□□ -1.75
CSMD3-208ENST00000497026 CTDSP1Q9GZU7 261 aa4.1□□□□□ -1.75
CSMD3-208ENST00000497026 CHST6Q9GZX3 395 aa4.1□□□□□ -1.75
CSMD3-208ENST00000497026 HIPK2Q9H2X6 1198 aa4.1□□□□□ -1.75
CSMD3-208ENST00000497026 MED20Q9H944 212 aa4.1□□□□□ -1.75
CSMD3-208ENST00000497026 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP4.1□□□□□ -1.75
CSMD3-208ENST00000497026 OR5AC2Q9NZP5 309 aa4.1□□□□□ -1.75
CSMD3-208ENST00000497026 GRHPRQ9UBQ7 328 aa4.1□□□□□ -1.75
CSMD3-208ENST00000497026 VSIG4Q9Y279 399 aa4.1□□□□□ -1.75
CSMD3-208ENST00000497026 IER3IP1Q9Y5U9 82 aa4.1□□□□□ -1.75
CSMD3-208ENST00000497026 TANC2Q9HCD6 1990 aa4.09□□□□□ -1.75
CSMD3-208ENST00000497026 FLNAP21333 2647 aaKnown RBP4.09□□□□□ -1.75
CSMD3-208ENST00000497026 IGLV3-9A0A075B6K5 115 aa4.09□□□□□ -1.75
CSMD3-208ENST00000497026 TRBV24-1A0A075B6N3 115 aa4.09□□□□□ -1.75
CSMD3-208ENST00000497026 TGIF2-C20orf24A0A0A6YYL0 155 aa4.09□□□□□ -1.75
CSMD3-208ENST00000497026 IGLV1-36A0A0B4J1U3 117 aa4.09□□□□□ -1.75
CSMD3-208ENST00000497026 A0A0U1RQV5 110 aa4.09□□□□□ -1.75
CSMD3-208ENST00000497026 XKRY2A2RUG3 117 aa4.09□□□□□ -1.75
CSMD3-208ENST00000497026 MEIS3P1A6NDR6 274 aa4.09□□□□□ -1.75
CSMD3-208ENST00000497026 TMEM212A6NML5 194 aa4.09□□□□□ -1.75
CSMD3-208ENST00000497026 DHRS7CA6NNS2 312 aa4.09□□□□□ -1.75
CSMD3-208ENST00000497026 RNF212BA8MTL3 300 aa4.09□□□□□ -1.75
CSMD3-208ENST00000497026 B9A039 149 aa4.09□□□□□ -1.75
CSMD3-208ENST00000497026 C9JQL5 133 aa4.09□□□□□ -1.75
CSMD3-208ENST00000497026 H3BQ15 152 aa4.09□□□□□ -1.75
CSMD3-208ENST00000497026 CLDN34H7C241 214 aa4.09□□□□□ -1.75
CSMD3-208ENST00000497026 BHLHE40O14503 412 aa4.09□□□□□ -1.75
CSMD3-208ENST00000497026 XKRYO14609 159 aa4.09□□□□□ -1.75
CSMD3-208ENST00000497026 GEMIN2O14893 280 aaKnown RBP4.09□□□□□ -1.75
CSMD3-208ENST00000497026 ARPC3O15145 178 aa4.09□□□□□ -1.75
CSMD3-208ENST00000497026 LY6G6DO95868 133 aa4.09□□□□□ -1.75
CSMD3-208ENST00000497026 SCGB1D1O95968 90 aa4.09□□□□□ -1.75
CSMD3-208ENST00000497026 CYB5R3P00387 301 aaPredicted RBP4.09□□□□□ -1.75
CSMD3-208ENST00000497026 HSPB1P04792 205 aaKnown RBP4.09□□□□□ -1.75
CSMD3-208ENST00000497026 CXCL1P09341 107 aa4.09□□□□□ -1.75
CSMD3-208ENST00000497026 PTHLHP12272 177 aa4.09□□□□□ -1.75
CSMD3-208ENST00000497026 HIST1H1CP16403 213 aaKnown RBP4.09□□□□□ -1.75
CSMD3-208ENST00000497026 MSR1P21757 451 aa4.09□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 49.6 ms