RNA–Protein interactions for RNA: ENST00000495039.1

VPS50-219, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 1,115 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-219ENST00000495039 CXCL3P19876 107 aa0.99□□□□□ -2.25
VPS50-219ENST00000495039 TBPL1P62380 186 aa0.99□□□□□ -2.25
VPS50-219ENST00000495039 FABP5Q01469 135 aa0.99□□□□□ -2.25
VPS50-219ENST00000495039 TMED1Q13445 227 aa0.99□□□□□ -2.25
VPS50-219ENST00000495039 EBPQ15125 230 aaKnown RBP0.99□□□□□ -2.25
VPS50-219ENST00000495039 ZNF791Q3KP31 576 aaPredicted RBP0.99□□□□□ -2.25
VPS50-219ENST00000495039 TMEM42Q69YG0 159 aa0.99□□□□□ -2.25
VPS50-219ENST00000495039 OR10K2Q6IF99 312 aa0.99□□□□□ -2.25
VPS50-219ENST00000495039 RIBC1Q8N443 379 aaPredicted RBP0.99□□□□□ -2.25
VPS50-219ENST00000495039 OR13C8Q8NGS7 320 aa0.99□□□□□ -2.25
VPS50-219ENST00000495039 SLC37A2Q8TED4 501 aa0.99□□□□□ -2.25
VPS50-219ENST00000495039 RNF133Q8WVZ7 376 aa0.99□□□□□ -2.25
VPS50-219ENST00000495039 ASB17Q8WXJ9 295 aa0.99□□□□□ -2.25
VPS50-219ENST00000495039 RNASE6Q93091 150 aaKnown RBP0.99□□□□□ -2.25
VPS50-219ENST00000495039 C12orf43Q96C57 262 aaKnown RBP0.99□□□□□ -2.25
VPS50-219ENST00000495039 SFRP2Q96HF1 295 aa0.99□□□□□ -2.25
VPS50-219ENST00000495039 NSRP1Q9H0G5 558 aaKnown RBP0.99□□□□□ -2.25
VPS50-219ENST00000495039 C8orf4Q9NR00 106 aa0.99□□□□□ -2.25
VPS50-219ENST00000495039 CD300AQ9UGN4 299 aa0.99□□□□□ -2.25
VPS50-219ENST00000495039 CFAP45Q9UL16 551 aa0.99□□□□□ -2.25
VPS50-219ENST00000495039 KLK5Q9Y337 293 aaPredicted RBP0.99□□□□□ -2.25
VPS50-219ENST00000495039 RP1L1Q8IWN7 2480 aaPredicted RBP0.99□□□□□ -2.25
VPS50-219ENST00000495039 TEX50A0A1B0GTY4 177 aa0.98□□□□□ -2.25
VPS50-219ENST00000495039 C5orf49A4QMS7 147 aa0.98□□□□□ -2.25
VPS50-219ENST00000495039 KLRC4O43908 158 aa0.98□□□□□ -2.25
VPS50-219ENST00000495039 PGLYRP1O75594 196 aaPredicted RBP0.98□□□□□ -2.25
VPS50-219ENST00000495039 IL6P05231 212 aa0.98□□□□□ -2.25
VPS50-219ENST00000495039 HLA-DQB2P05538 268 aa0.98□□□□□ -2.25
VPS50-219ENST00000495039 CLDN12P56749 244 aa0.98□□□□□ -2.25
VPS50-219ENST00000495039 HOXC5Q00444 222 aa0.98□□□□□ -2.25
VPS50-219ENST00000495039 LGALS9BQ3B8N2 356 aa0.98□□□□□ -2.25
VPS50-219ENST00000495039 SDHAF4Q5VUM1 108 aa0.98□□□□□ -2.25
VPS50-219ENST00000495039 OR51T1Q8NGJ9 327 aa0.98□□□□□ -2.25
VPS50-219ENST00000495039 DCUN1D5Q9BTE7 237 aa0.98□□□□□ -2.25
VPS50-219ENST00000495039 TMEM109Q9BVC6 243 aa0.98□□□□□ -2.25
VPS50-219ENST00000495039 TTTY13Q9BZ97 58 aa0.98□□□□□ -2.25
VPS50-219ENST00000495039 SLC22A4Q9H015 551 aa0.98□□□□□ -2.25
VPS50-219ENST00000495039 FN1P02751 2386 aaKnown RBP0.97□□□□□ -2.25
VPS50-219ENST00000495039 SIPA1L1O43166 1804 aa0.97□□□□□ -2.25
VPS50-219ENST00000495039 ZFHX2Q9C0A1 2572 aaPredicted RBP0.97□□□□□ -2.25
VPS50-219ENST00000495039 A0A087WUU8 490 aa0.97□□□□□ -2.25
VPS50-219ENST00000495039 GOLGA6L10A6NI86 522 aa0.97□□□□□ -2.25
VPS50-219ENST00000495039 NPPAP01160 153 aa0.97□□□□□ -2.25
VPS50-219ENST00000495039 C1QCP02747 245 aa0.97□□□□□ -2.25
VPS50-219ENST00000495039 ZNF705DP0CH99 300 aaPredicted RBP0.97□□□□□ -2.25
VPS50-219ENST00000495039 ZNF705BP0CI00 300 aaPredicted RBP0.97□□□□□ -2.25
VPS50-219ENST00000495039 LYNX1P0DP58 116 aa0.97□□□□□ -2.25
VPS50-219ENST00000495039 CASQ1P31415 396 aa0.97□□□□□ -2.25
VPS50-219ENST00000495039 CA5AP35218 305 aa0.97□□□□□ -2.25
VPS50-219ENST00000495039 IFNGR2P38484 337 aa0.97□□□□□ -2.25
VPS50-219ENST00000495039 CD79BP40259 229 aa0.97□□□□□ -2.25
VPS50-219ENST00000495039 CCR2P41597 374 aa0.97□□□□□ -2.25
VPS50-219ENST00000495039 EMP1P54849 157 aa0.97□□□□□ -2.25
VPS50-219ENST00000495039 TAS2R20P59543 309 aa0.97□□□□□ -2.25
VPS50-219ENST00000495039 AP1S1P61966 158 aa0.97□□□□□ -2.25
VPS50-219ENST00000495039 HLA-DRB3P79483 266 aa0.97□□□□□ -2.25
VPS50-219ENST00000495039 DNM1P34Q6PK57 102 aa0.97□□□□□ -2.25
VPS50-219ENST00000495039 LYZL1Q6UWQ5 148 aa0.97□□□□□ -2.25
VPS50-219ENST00000495039 KTN1-AS1Q86SY8 53 aa0.97□□□□□ -2.25
VPS50-219ENST00000495039 FUNDC1Q8IVP5 155 aa0.97□□□□□ -2.25
VPS50-219ENST00000495039 CD302Q8IX05 232 aa0.97□□□□□ -2.25
VPS50-219ENST00000495039 PACRGLQ8N7B6 248 aa0.97□□□□□ -2.25
VPS50-219ENST00000495039 ZNF675Q8TD23 568 aa0.97□□□□□ -2.25
VPS50-219ENST00000495039 ASB13Q8WXK3 278 aa0.97□□□□□ -2.25
VPS50-219ENST00000495039 HSPB9Q9BQS6 159 aa0.97□□□□□ -2.25
VPS50-219ENST00000495039 DOHHQ9BU89 302 aa0.97□□□□□ -2.25
VPS50-219ENST00000495039 MS4A6AQ9H2W1 248 aa0.97□□□□□ -2.25
VPS50-219ENST00000495039 SPANXB1Q9NS25 103 aaPredicted RBP0.97□□□□□ -2.25
VPS50-219ENST00000495039 RTTNQ86VV8 2226 aa0.97□□□□□ -2.25
VPS50-219ENST00000495039 NAV1Q8NEY1 1877 aa0.97□□□□□ -2.25
VPS50-219ENST00000495039 KMT2BQ9UMN6 2715 aaPredicted RBP0.96□□□□□ -2.26
VPS50-219ENST00000495039 MEIKINA0A087WXM9 373 aa0.96□□□□□ -2.26
VPS50-219ENST00000495039 ATP8B1O43520 1251 aa0.96□□□□□ -2.26
VPS50-219ENST00000495039 HPGDSO60760 199 aa0.96□□□□□ -2.26
VPS50-219ENST00000495039 OCMP0CE72 109 aaPredicted RBP0.96□□□□□ -2.26
VPS50-219ENST00000495039 PSMB8P28062 276 aa0.96□□□□□ -2.26
VPS50-219ENST00000495039 FXYD7P58549 80 aa0.96□□□□□ -2.26
VPS50-219ENST00000495039 RPS24P62847 133 aaKnown RBP0.96□□□□□ -2.26
VPS50-219ENST00000495039 TMEM155Q4W5P6 130 aa0.96□□□□□ -2.26
VPS50-219ENST00000495039 CLEC6AQ6EIG7 209 aa0.96□□□□□ -2.26
VPS50-219ENST00000495039 FAM19A5Q7Z5A7 132 aaPredicted RBP0.96□□□□□ -2.26
VPS50-219ENST00000495039 OR7G1Q8NGA0 311 aa0.96□□□□□ -2.26
VPS50-219ENST00000495039 SLC7A6Q92536 515 aa0.96□□□□□ -2.26
VPS50-219ENST00000495039 TMA16Q96EY4 203 aaKnown RBP0.96□□□□□ -2.26
VPS50-219ENST00000495039 ANKRD36BP1Q96IX9 119 aa0.96□□□□□ -2.26
VPS50-219ENST00000495039 DHRS9Q9BPW9 319 aa0.96□□□□□ -2.26
VPS50-219ENST00000495039 VCX3BQ9H321 246 aa0.96□□□□□ -2.26
VPS50-219ENST00000495039 CST9LQ9H4G1 147 aa0.96□□□□□ -2.26
VPS50-219ENST00000495039 WDR54Q9H977 334 aa0.96□□□□□ -2.26
VPS50-219ENST00000495039 SPACA1Q9HBV2 294 aa0.96□□□□□ -2.26
VPS50-219ENST00000495039 ZNHIT6Q9NWK9 470 aaKnown RBP0.96□□□□□ -2.26
VPS50-219ENST00000495039 TIMM9Q9Y5J7 89 aa0.96□□□□□ -2.26
VPS50-219ENST00000495039 C9JCJ5 164 aa0.95□□□□□ -2.26
VPS50-219ENST00000495039 F8W036 122 aa0.95□□□□□ -2.26
VPS50-219ENST00000495039 ZNF737O75373 536 aa0.95□□□□□ -2.26
VPS50-219ENST00000495039 HIST1H1CP16403 213 aaKnown RBP0.95□□□□□ -2.26
VPS50-219ENST00000495039 GPX2P18283 190 aa0.95□□□□□ -2.26
VPS50-219ENST00000495039 PSMB6P28072 239 aa0.95□□□□□ -2.26
VPS50-219ENST00000495039 ALDH3A1P30838 453 aa0.95□□□□□ -2.26
VPS50-219ENST00000495039 TPI1P60174 286 aa0.95□□□□□ -2.26
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms