RNA–Protein interactions for RNA: ENST00000491659.5

USP39-217, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 648 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-217ENST00000491659 SOX15O60248 233 aa11.74□□□□□ -0.53
USP39-217ENST00000491659 SLC22A5O76082 557 aa11.74□□□□□ -0.53
USP39-217ENST00000491659 CNIH1O95406 144 aa11.74□□□□□ -0.53
USP39-217ENST00000491659 IGLV2-23P01705 113 aa11.74□□□□□ -0.53
USP39-217ENST00000491659 OR8U8P0C7N1 319 aa11.74□□□□□ -0.53
USP39-217ENST00000491659 TGFBR1P36897 503 aa11.74□□□□□ -0.53
USP39-217ENST00000491659 KRTAP10-11P60412 298 aa11.74□□□□□ -0.53
USP39-217ENST00000491659 LSM3P62310 102 aaKnown RBP11.74□□□□□ -0.53
USP39-217ENST00000491659 GNB1P62873 340 aa11.74□□□□□ -0.53
USP39-217ENST00000491659 RUNX1Q01196 453 aa11.74□□□□□ -0.53
USP39-217ENST00000491659 FHL3Q13643 280 aa11.74□□□□□ -0.53
USP39-217ENST00000491659 FXYD3Q14802 87 aa11.74□□□□□ -0.53
USP39-217ENST00000491659 VMA21Q3ZAQ7 101 aa11.74□□□□□ -0.53
USP39-217ENST00000491659 AKIRIN2Q53H80 203 aa11.74□□□□□ -0.53
USP39-217ENST00000491659 LFNGQ8NES3 379 aa11.74□□□□□ -0.53
USP39-217ENST00000491659 BEST4Q8NFU0 473 aa11.74□□□□□ -0.53
USP39-217ENST00000491659 OR5B12Q96R08 314 aa11.74□□□□□ -0.53
USP39-217ENST00000491659 SMIM31A0A1B0GVY4 71 aa11.73□□□□□ -0.53
USP39-217ENST00000491659 I3L521 148 aa11.73□□□□□ -0.53
USP39-217ENST00000491659 CRYZL1O95825 349 aa11.73□□□□□ -0.53
USP39-217ENST00000491659 HLA-DQB1P01920 261 aa11.73□□□□□ -0.53
USP39-217ENST00000491659 EGR2P11161 476 aaPredicted RBP11.73□□□□□ -0.53
USP39-217ENST00000491659 ZNF616Q08AN1 781 aa11.73□□□□□ -0.53
USP39-217ENST00000491659 KIAA0141Q14154 515 aaPredicted RBP11.73□□□□□ -0.53
USP39-217ENST00000491659 UBE2NLQ5JXB2 153 aa11.73□□□□□ -0.53
USP39-217ENST00000491659 C9orf66Q5T8R8 295 aa11.73□□□□□ -0.53
USP39-217ENST00000491659 KCTD9Q7L273 389 aa11.73□□□□□ -0.53
USP39-217ENST00000491659 OR1N2Q8NGR9 330 aa11.73□□□□□ -0.53
USP39-217ENST00000491659 CASTOR1Q8WTX7 329 aa11.73□□□□□ -0.53
USP39-217ENST00000491659 DDB2Q92466 427 aa11.73□□□□□ -0.53
USP39-217ENST00000491659 SLA2Q9H6Q3 261 aa11.73□□□□□ -0.53
USP39-217ENST00000491659 MRPS7Q9Y2R9 242 aaKnown RBP11.73□□□□□ -0.53
USP39-217ENST00000491659 RBMX2Q9Y388 322 aaKnown RBP11.73□□□□□ -0.53
USP39-217ENST00000491659 LINC00473A8K010 186 aa11.72□□□□□ -0.53
USP39-217ENST00000491659 SEC14L6B5MCN3 397 aa11.72□□□□□ -0.53
USP39-217ENST00000491659 ARPC1BO15143 372 aaKnown RBP11.72□□□□□ -0.53
USP39-217ENST00000491659 TUSC2O75896 110 aa11.72□□□□□ -0.53
USP39-217ENST00000491659 CBX5P45973 191 aa11.72□□□□□ -0.53
USP39-217ENST00000491659 TPPP2P59282 170 aa11.72□□□□□ -0.53
USP39-217ENST00000491659 OSR1Q8TAX0 266 aaPredicted RBP11.72□□□□□ -0.53
USP39-217ENST00000491659 S100A16Q96FQ6 103 aaKnown RBP11.72□□□□□ -0.53
USP39-217ENST00000491659 AUNIPQ9H7T9 357 aa11.72□□□□□ -0.53
USP39-217ENST00000491659 PRELID3BQ9Y3B1 194 aa11.72□□□□□ -0.53
USP39-217ENST00000491659 DNAH3Q8TD57 4116 aa11.71□□□□□ -0.53
USP39-217ENST00000491659 IGKV1D-13A0A0B4J2D9 117 aa11.71□□□□□ -0.53
USP39-217ENST00000491659 K7EIL1 84 aa11.71□□□□□ -0.53
USP39-217ENST00000491659 CREBL2O60519 120 aaPredicted RBP11.71□□□□□ -0.53
USP39-217ENST00000491659 FCGR3BO75015 233 aa11.71□□□□□ -0.53
USP39-217ENST00000491659 TRGV3P03979 118 aa11.71□□□□□ -0.53
USP39-217ENST00000491659 CRYGBP07316 175 aa11.71□□□□□ -0.53
USP39-217ENST00000491659 LGALS1P09382 135 aaKnown RBP11.71□□□□□ -0.53
USP39-217ENST00000491659 SMIM18P0DKX4 95 aa11.71□□□□□ -0.53
USP39-217ENST00000491659 IGKV1-13P0DP09 117 aa11.71□□□□□ -0.53
USP39-217ENST00000491659 RPS19P39019 145 aaKnown RBP11.71□□□□□ -0.53
USP39-217ENST00000491659 UBE2KP61086 200 aa11.71□□□□□ -0.53
USP39-217ENST00000491659 DGCR2P98153 550 aa11.71□□□□□ -0.53
USP39-217ENST00000491659 PJVKQ0ZLH3 352 aa11.71□□□□□ -0.53
USP39-217ENST00000491659 HOGA1Q86XE5 327 aa11.71□□□□□ -0.53
USP39-217ENST00000491659 GVQW1Q8N7I0 195 aa11.71□□□□□ -0.53
USP39-217ENST00000491659 SAMD12Q8N8I0 201 aa11.71□□□□□ -0.53
USP39-217ENST00000491659 TEX45Q8NA69 505 aa11.71□□□□□ -0.53
USP39-217ENST00000491659 TMEM68Q96MH6 324 aa11.71□□□□□ -0.53
USP39-217ENST00000491659 MS4A10Q96PG2 267 aa11.71□□□□□ -0.53
USP39-217ENST00000491659 PHB2Q99623 299 aa11.71□□□□□ -0.53
USP39-217ENST00000491659 DCUN1D5Q9BTE7 237 aa11.71□□□□□ -0.53
USP39-217ENST00000491659 IFT46Q9NQC8 304 aa11.71□□□□□ -0.53
USP39-217ENST00000491659 ZNF355PQ9NSJ1 428 aa11.71□□□□□ -0.53
USP39-217ENST00000491659 WI2-2373I1.2A0A1W2PRP0 233 aa11.7□□□□□ -0.54
USP39-217ENST00000491659 TRIM64CA6NLI5 447 aa11.7□□□□□ -0.54
USP39-217ENST00000491659 SRRM4A7MD48 611 aaKnown RBP11.7□□□□□ -0.54
USP39-217ENST00000491659 H3BUA1 57 aa11.7□□□□□ -0.54
USP39-217ENST00000491659 XRCC3O43542 346 aa11.7□□□□□ -0.54
USP39-217ENST00000491659 SSBP2P81877 361 aaPredicted RBP11.7□□□□□ -0.54
USP39-217ENST00000491659 OR2B11Q5JQS5 317 aa11.7□□□□□ -0.54
USP39-217ENST00000491659 TMEM69Q5SWH9 247 aa11.7□□□□□ -0.54
USP39-217ENST00000491659 OVCH2Q7RTZ1 564 aa11.7□□□□□ -0.54
USP39-217ENST00000491659 POC5Q8NA72 575 aa11.7□□□□□ -0.54
USP39-217ENST00000491659 OR13F1Q8NGS4 319 aa11.7□□□□□ -0.54
USP39-217ENST00000491659 KCTD12Q96CX2 325 aaKnown RBP11.7□□□□□ -0.54
USP39-217ENST00000491659 HSD17B10Q99714 261 aaKnown RBP11.7□□□□□ -0.54
USP39-217ENST00000491659 FUNDC2Q9BWH2 189 aa11.7□□□□□ -0.54
USP39-217ENST00000491659 ALX4Q9H161 411 aaPredicted RBP11.7□□□□□ -0.54
USP39-217ENST00000491659 LINC01619G3V211 115 aa11.69□□□□□ -0.54
USP39-217ENST00000491659 RAMP3O60896 148 aa11.69□□□□□ -0.54
USP39-217ENST00000491659 IGHV3-11P01762 117 aa11.69□□□□□ -0.54
USP39-217ENST00000491659 PTHLHP12272 177 aa11.69□□□□□ -0.54
USP39-217ENST00000491659 FCGR2CP31995 323 aa11.69□□□□□ -0.54
USP39-217ENST00000491659 DCTN2Q13561 401 aaKnown RBP11.69□□□□□ -0.54
USP39-217ENST00000491659 TNXAQ16473 311 aa11.69□□□□□ -0.54
USP39-217ENST00000491659 ASPHD1Q5U4P2 390 aa11.69□□□□□ -0.54
USP39-217ENST00000491659 OR4S2Q8NH73 311 aa11.69□□□□□ -0.54
USP39-217ENST00000491659 SECTM1Q8WVN6 248 aa11.69□□□□□ -0.54
USP39-217ENST00000491659 TCTEX1D2Q8WW35 142 aa11.69□□□□□ -0.54
USP39-217ENST00000491659 ACOT12Q8WYK0 555 aa11.69□□□□□ -0.54
USP39-217ENST00000491659 SLC25A46Q96AG3 418 aa11.69□□□□□ -0.54
USP39-217ENST00000491659 TAS2R8Q9NYW2 309 aa11.69□□□□□ -0.54
USP39-217ENST00000491659 IGHV4OR15-8A0A075B7B6 117 aa11.68□□□□□ -0.54
USP39-217ENST00000491659 A0A087WW49 117 aa11.68□□□□□ -0.54
USP39-217ENST00000491659 C13orf42A0A1B0GVH6 325 aa11.68□□□□□ -0.54
USP39-217ENST00000491659 MEIS3P1A6NDR6 274 aa11.68□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms