RNA–Protein interactions for RNA: ENST00000489180.6

NPHP4-209, Transcript of nephrocystin 4, humanhuman

TSL 2

Gene NPHP4, Length 5,548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-209ENST00000489180 GPR6P46095 362 aaPredicted RBP15.08■□□□□ 0
NPHP4-209ENST00000489180 C2orf68Q2NKX9 166 aa15.08■□□□□ 0
NPHP4-209ENST00000489180 CCDC144NLQ6NUI1 221 aa15.08■□□□□ 0
NPHP4-209ENST00000489180 OR4B1Q8NGF8 309 aa15.08■□□□□ 0
NPHP4-209ENST00000489180 LSM10Q969L4 123 aaKnown RBP15.08■□□□□ 0
NPHP4-209ENST00000489180 HLA-DQA1P01909 254 aa15.08■□□□□ 0
NPHP4-209ENST00000489180 CDX1P47902 265 aaPredicted RBP15.08■□□□□ 0
NPHP4-209ENST00000489180 IDI2-AS1Q9NZ38 188 aa15.08■□□□□ 0
NPHP4-209ENST00000489180 TUBGCP6Q96RT7 1819 aa15.08■□□□□ 0
NPHP4-209ENST00000489180 ZNF324O75467 553 aaPredicted RBP15.07■□□□□ 0
NPHP4-209ENST00000489180 C1QL2Q7Z5L3 287 aa15.07■□□□□ 0
NPHP4-209ENST00000489180 KLF14Q8TD94 323 aaPredicted RBP15.07■□□□□ 0
NPHP4-209ENST00000489180 DDA1Q9BW61 102 aa15.07■□□□□ 0
NPHP4-209ENST00000489180 PKIBQ9C010 78 aa15.07■□□□□ 0
NPHP4-209ENST00000489180 TDRD15B5MCY1 1934 aaKnown RBP15.07■□□□□ 0
NPHP4-209ENST00000489180 LOC107984156A0A0G2JMH3 177 aa15.07■□□□□ 0
NPHP4-209ENST00000489180 ARL17AQ8IVW1 177 aa15.07■□□□□ 0
NPHP4-209ENST00000489180 SSBP3Q9BWW4 388 aaPredicted RBP15.07■□□□□ 0
NPHP4-209ENST00000489180 CDC42EP3Q9UKI2 254 aa15.07■□□□□ 0
NPHP4-209ENST00000489180 MSGN1A6NI15 193 aa15.06■□□□□ 0
NPHP4-209ENST00000489180 DNAJC13O75165 2243 aa15.06■□□□□ 0
NPHP4-209ENST00000489180 COX6A1P12074 109 aa15.06■□□□□ 0
NPHP4-209ENST00000489180 ATP1A1-AS1Q5TC04 95 aa15.06■□□□□ 0
NPHP4-209ENST00000489180 F11RQ9Y624 299 aaKnown RBP15.06■□□□□ 0
NPHP4-209ENST00000489180 DNAJC4Q9NNZ3 241 aa15.06■□□□□ 0
NPHP4-209ENST00000489180 SRSF12Q8WXF0 261 aaKnown RBP15.06■□□□□ 0
NPHP4-209ENST00000489180 MPTX1A8MV57 137 aa15.06■□□□□ 0
NPHP4-209ENST00000489180 IGHMP01871 453 aa15.06■□□□□ 0
NPHP4-209ENST00000489180 MC5RP33032 325 aa15.06■□□□□ 0
NPHP4-209ENST00000489180 HSPE1P61604 102 aaKnown RBP15.06■□□□□ 0
NPHP4-209ENST00000489180 OR10S1Q8NGN2 331 aa15.06■□□□□ 0
NPHP4-209ENST00000489180 GGACTQ9BVM4 153 aa15.06■□□□□ 0
NPHP4-209ENST00000489180 SHANK3Q9BYB0 1731 aa15.05■□□□□ 0
NPHP4-209ENST00000489180 UBR3Q6ZT12 1888 aa15.05■□□□□ 0
NPHP4-209ENST00000489180 ANKRD31Q8N7Z5 1873 aa15.05■□□□□ 0
NPHP4-209ENST00000489180 RAMP1O60894 148 aa15.05■□□□□ 0
NPHP4-209ENST00000489180 DRAM1Q8N682 238 aa15.05■□□□□ 0
NPHP4-209ENST00000489180 A0A1B0GV90 55 aa15.05■□□□□ -0
NPHP4-209ENST00000489180 C2orf83Q53S99 150 aa15.05■□□□□ -0
NPHP4-209ENST00000489180 AKIRIN1Q9H9L7 192 aaPredicted RBP15.05■□□□□ -0
NPHP4-209ENST00000489180 UQCR10Q9UDW1 63 aa15.05■□□□□ -0
NPHP4-209ENST00000489180 K7ERU9 68 aa15.05■□□□□ -0
NPHP4-209ENST00000489180 FGF5P12034 268 aa15.05■□□□□ -0
NPHP4-209ENST00000489180 SELENOTP62341 195 aa15.05■□□□□ -0
NPHP4-209ENST00000489180 P2RY6Q15077 328 aa15.05■□□□□ -0
NPHP4-209ENST00000489180 TXNDC17Q9BRA2 123 aa15.05■□□□□ -0
NPHP4-209ENST00000489180 PRR33A8MZF0 331 aa15.05■□□□□ -0
NPHP4-209ENST00000489180 CD8AP01732 235 aa15.05■□□□□ -0
NPHP4-209ENST00000489180 PEAR1Q5VY43 1037 aaPredicted RBP15.05■□□□□ -0
NPHP4-209ENST00000489180 CALHM1Q8IU99 346 aa15.05■□□□□ -0
NPHP4-209ENST00000489180 SFRP2Q96HF1 295 aa15.05■□□□□ -0
NPHP4-209ENST00000489180 TIAF1O95411 115 aa15.04■□□□□ -0
NPHP4-209ENST00000489180 C8orf88P0DMB2 117 aa15.04■□□□□ -0
NPHP4-209ENST00000489180 OR10J6PQ8NGY7 276 aa15.04■□□□□ -0
NPHP4-209ENST00000489180 IGKV1D-43A0A0B4J1Z2 117 aa15.04■□□□□ -0
NPHP4-209ENST00000489180 FAM90A26D6RGX4 464 aa15.04■□□□□ -0
NPHP4-209ENST00000489180 SMIM8Q96KF7 97 aa15.04■□□□□ -0
NPHP4-209ENST00000489180 EPOPA6NHQ4 379 aa15.04■□□□□ -0
NPHP4-209ENST00000489180 PMCHL1Q16048 86 aa15.04■□□□□ -0
NPHP4-209ENST00000489180 MMD2Q8IY49 270 aa15.04■□□□□ -0
NPHP4-209ENST00000489180 SPSB4Q96A44 273 aa15.04■□□□□ -0
NPHP4-209ENST00000489180 TCF19Q9Y242 345 aa15.04■□□□□ -0
NPHP4-209ENST00000489180 RRHO14718 337 aa15.04■□□□□ -0
NPHP4-209ENST00000489180 TM4SF20Q53R12 229 aa15.04■□□□□ -0
NPHP4-209ENST00000489180 PRDM14Q9GZV8 571 aa15.04■□□□□ -0
NPHP4-209ENST00000489180 RALYQ9UKM9 306 aaKnown RBP15.04■□□□□ -0
NPHP4-209ENST00000489180 A0A0G2JK05 382 aa15.03■□□□□ -0
NPHP4-209ENST00000489180 NUDT3O95989 172 aa15.03■□□□□ -0
NPHP4-209ENST00000489180 FABP2P12104 132 aa15.03■□□□□ -0
NPHP4-209ENST00000489180 TMEM54Q969K7 222 aa15.03■□□□□ -0
NPHP4-209ENST00000489180 ATAD5Q96QE3 1844 aa15.03■□□□□ -0
NPHP4-209ENST00000489180 LAMTOR1Q6IAA8 161 aa15.03■□□□□ -0
NPHP4-209ENST00000489180 STPG3Q8N7X2 389 aa15.03■□□□□ -0
NPHP4-209ENST00000489180 PARD6GQ9BYG4 376 aaPredicted RBP15.03■□□□□ -0
NPHP4-209ENST00000489180 UNQ5815/PRO19632Q6UWF5 114 aa15.03■□□□□ -0
NPHP4-209ENST00000489180 METTL26Q96S19 204 aa15.03■□□□□ -0
NPHP4-209ENST00000489180 KLK15Q9H2R5 256 aa15.03■□□□□ -0
NPHP4-209ENST00000489180 A0A0B4J293 547 aa15.03■□□□□ -0
NPHP4-209ENST00000489180 WNT9BO14905 357 aa15.03■□□□□ -0
NPHP4-209ENST00000489180 PF4V1P10720 104 aa15.03■□□□□ -0
NPHP4-209ENST00000489180 CBLN1P23435 193 aa15.03■□□□□ -0
NPHP4-209ENST00000489180 PCOLCEQ15113 449 aa15.03■□□□□ -0
NPHP4-209ENST00000489180 PLP1P60201 277 aa15.03■□□□□ -0
NPHP4-209ENST00000489180 RPL39P5Q59GN2 51 aa15.03■□□□□ -0
NPHP4-209ENST00000489180 C1orf174Q8IYL3 243 aa15.03■□□□□ -0
NPHP4-209ENST00000489180 SAXO1Q8IYX7 474 aa15.03■□□□□ -0
NPHP4-209ENST00000489180 DIRC2Q96SL1 478 aa15.03■□□□□ -0
NPHP4-209ENST00000489180 COL25A1Q9BXS0 654 aaPredicted RBP15.03■□□□□ -0
NPHP4-209ENST00000489180 COL11A1P12107 1806 aaPredicted RBP15.02■□□□□ -0
NPHP4-209ENST00000489180 NABP2Q9BQ15 211 aa15.02■□□□□ -0
NPHP4-209ENST00000489180 ZNF646O15015 1829 aaPredicted RBP15.02■□□□□ -0
NPHP4-209ENST00000489180 A0A1W2PQM1 296 aa15.02■□□□□ -0
NPHP4-209ENST00000489180 POLR2AP24928 1970 aaKnown RBP15.02□□□□□ -0.01
NPHP4-209ENST00000489180 SAP25Q8TEE9 199 aa15.02□□□□□ -0.01
NPHP4-209ENST00000489180 IGLV3-21P80748 117 aaPredicted RBP15.02□□□□□ -0.01
NPHP4-209ENST00000489180 EFNB1P98172 346 aa15.02□□□□□ -0.01
NPHP4-209ENST00000489180 SLC25A34Q6PIV7 304 aa15.02□□□□□ -0.01
NPHP4-209ENST00000489180 HIST1H4GQ99525 98 aa15.02□□□□□ -0.01
NPHP4-209ENST00000489180 MOSP00540 346 aa15.01□□□□□ -0.01
NPHP4-209ENST00000489180 FAM106CPP0CH98 169 aa15.01□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms