RNA–Protein interactions for RNA: ENST00000482065.1

LIMS3-204, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 1 (best)

Gene LIMS3, Length 690 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-204ENST00000482065 LINC00473A8K010 186 aa11.5□□□□□ -0.57
LIMS3-204ENST00000482065 CNIH1O95406 144 aa11.5□□□□□ -0.57
LIMS3-204ENST00000482065 TRGV3P03979 118 aa11.5□□□□□ -0.57
LIMS3-204ENST00000482065 NFYAP23511 347 aaPredicted RBP11.5□□□□□ -0.57
LIMS3-204ENST00000482065 DUTP33316 252 aaKnown RBP11.5□□□□□ -0.57
LIMS3-204ENST00000482065 LGALS7P47929 136 aa11.5□□□□□ -0.57
LIMS3-204ENST00000482065 RTL8BQ17RB0 113 aa11.5□□□□□ -0.57
LIMS3-204ENST00000482065 TMEM177Q53S58 311 aa11.5□□□□□ -0.57
LIMS3-204ENST00000482065 VAX1Q5SQQ9 334 aa11.5□□□□□ -0.57
LIMS3-204ENST00000482065 OR5T1Q8NG75 326 aa11.5□□□□□ -0.57
LIMS3-204ENST00000482065 OR5H6Q8NGV6 325 aa11.5□□□□□ -0.57
LIMS3-204ENST00000482065 DDB2Q92466 427 aa11.5□□□□□ -0.57
LIMS3-204ENST00000482065 ZNF355PQ9NSJ1 428 aa11.5□□□□□ -0.57
LIMS3-204ENST00000482065 RHBDL2Q9NX52 303 aa11.5□□□□□ -0.57
LIMS3-204ENST00000482065 SSX5O60225 188 aa11.49□□□□□ -0.57
LIMS3-204ENST00000482065 CRYZL1O95825 349 aa11.49□□□□□ -0.57
LIMS3-204ENST00000482065 CD36P16671 472 aa11.49□□□□□ -0.57
LIMS3-204ENST00000482065 CD40LGP29965 261 aa11.49□□□□□ -0.57
LIMS3-204ENST00000482065 GNG2P59768 71 aa11.49□□□□□ -0.57
LIMS3-204ENST00000482065 CBX3Q13185 183 aa11.49□□□□□ -0.57
LIMS3-204ENST00000482065 DCTN2Q13561 401 aaKnown RBP11.49□□□□□ -0.57
LIMS3-204ENST00000482065 MRGPRG-AS1Q2M3A8 158 aa11.49□□□□□ -0.57
LIMS3-204ENST00000482065 POC5Q8NA72 575 aa11.49□□□□□ -0.57
LIMS3-204ENST00000482065 SLC25A38Q96DW6 304 aa11.49□□□□□ -0.57
LIMS3-204ENST00000482065 RHOVQ96L33 236 aa11.49□□□□□ -0.57
LIMS3-204ENST00000482065 CENPOQ9BU64 300 aa11.49□□□□□ -0.57
LIMS3-204ENST00000482065 SLA2Q9H6Q3 261 aa11.49□□□□□ -0.57
LIMS3-204ENST00000482065 ZNF256Q9Y2P7 627 aaPredicted RBP11.49□□□□□ -0.57
LIMS3-204ENST00000482065 LSM4Q9Y4Z0 139 aaKnown RBP11.49□□□□□ -0.57
LIMS3-204ENST00000482065 IGKV1D-13A0A0B4J2D9 117 aa11.48□□□□□ -0.57
LIMS3-204ENST00000482065 SCGNO76038 276 aa11.48□□□□□ -0.57
LIMS3-204ENST00000482065 LY86O95711 162 aa11.48□□□□□ -0.57
LIMS3-204ENST00000482065 HSPB1P04792 205 aaKnown RBP11.48□□□□□ -0.57
LIMS3-204ENST00000482065 APELAP0DMC3 54 aa11.48□□□□□ -0.57
LIMS3-204ENST00000482065 IGKV1-13P0DP09 117 aa11.48□□□□□ -0.57
LIMS3-204ENST00000482065 RRASP10301 218 aa11.48□□□□□ -0.57
LIMS3-204ENST00000482065 PITPNAQ00169 270 aa11.48□□□□□ -0.57
LIMS3-204ENST00000482065 DEFA5Q01523 94 aa11.48□□□□□ -0.57
LIMS3-204ENST00000482065 TAGLNQ01995 201 aaKnown RBP11.48□□□□□ -0.57
LIMS3-204ENST00000482065 KCTD21Q4G0X4 260 aa11.48□□□□□ -0.57
LIMS3-204ENST00000482065 IDNKQ5T6J7 187 aa11.48□□□□□ -0.57
LIMS3-204ENST00000482065 IDO2Q6ZQW0 420 aa11.48□□□□□ -0.57
LIMS3-204ENST00000482065 ZNF645Q8N7E2 425 aa11.48□□□□□ -0.57
LIMS3-204ENST00000482065 ADTRPQ96IZ2 230 aa11.48□□□□□ -0.57
LIMS3-204ENST00000482065 DCSTAMPQ9H295 470 aa11.48□□□□□ -0.57
LIMS3-204ENST00000482065 OR2W1Q9Y3N9 320 aa11.48□□□□□ -0.57
LIMS3-204ENST00000482065 TNCP24821 2201 aa11.48□□□□□ -0.57
LIMS3-204ENST00000482065 SORL1Q92673 2214 aa11.48□□□□□ -0.57
LIMS3-204ENST00000482065 SAP30O75446 220 aa11.47□□□□□ -0.57
LIMS3-204ENST00000482065 CTXN2P0C2S0 81 aa11.47□□□□□ -0.57
LIMS3-204ENST00000482065 INSL3P51460 131 aa11.47□□□□□ -0.57
LIMS3-204ENST00000482065 UBE2KP61086 200 aa11.47□□□□□ -0.57
LIMS3-204ENST00000482065 VMA21Q3ZAQ7 101 aa11.47□□□□□ -0.57
LIMS3-204ENST00000482065 OR2B11Q5JQS5 317 aa11.47□□□□□ -0.57
LIMS3-204ENST00000482065 CNIH2Q6PI25 160 aa11.47□□□□□ -0.57
LIMS3-204ENST00000482065 ZNF429Q86V71 674 aa11.47□□□□□ -0.57
LIMS3-204ENST00000482065 ANXA10Q9UJ72 324 aa11.47□□□□□ -0.57
LIMS3-204ENST00000482065 TRAV18A0A075B6X5 111 aa11.46□□□□□ -0.57
LIMS3-204ENST00000482065 H3BUA1 57 aa11.46□□□□□ -0.57
LIMS3-204ENST00000482065 FCGR3BO75015 233 aa11.46□□□□□ -0.57
LIMS3-204ENST00000482065 TUSC2O75896 110 aa11.46□□□□□ -0.57
LIMS3-204ENST00000482065 IGLV2-14P01704 120 aa11.46□□□□□ -0.57
LIMS3-204ENST00000482065 HLA-DQB1P01920 261 aa11.46□□□□□ -0.57
LIMS3-204ENST00000482065 TGFBR1P36897 503 aa11.46□□□□□ -0.57
LIMS3-204ENST00000482065 RPL30P62888 115 aaKnown RBP11.46□□□□□ -0.57
LIMS3-204ENST00000482065 TNXAQ16473 311 aa11.46□□□□□ -0.57
LIMS3-204ENST00000482065 PRSS8Q16651 343 aa11.46□□□□□ -0.57
LIMS3-204ENST00000482065 KCTD9Q7L273 389 aa11.46□□□□□ -0.57
LIMS3-204ENST00000482065 GVQW1Q8N7I0 195 aa11.46□□□□□ -0.57
LIMS3-204ENST00000482065 TEX45Q8NA69 505 aa11.46□□□□□ -0.57
LIMS3-204ENST00000482065 PHB2Q99623 299 aa11.46□□□□□ -0.57
LIMS3-204ENST00000482065 RBMX2Q9Y388 322 aaKnown RBP11.46□□□□□ -0.57
LIMS3-204ENST00000482065 ETV7Q9Y603 341 aa11.46□□□□□ -0.57
LIMS3-204ENST00000482065 C13orf42A0A1B0GVH6 325 aa11.45□□□□□ -0.58
LIMS3-204ENST00000482065 MSGN1A6NI15 193 aa11.45□□□□□ -0.58
LIMS3-204ENST00000482065 FCER2P06734 321 aa11.45□□□□□ -0.58
LIMS3-204ENST00000482065 SAA1P0DJI8 122 aaPredicted RBP11.45□□□□□ -0.58
LIMS3-204ENST00000482065 PTHLHP12272 177 aa11.45□□□□□ -0.58
LIMS3-204ENST00000482065 SCAND1P57086 179 aa11.45□□□□□ -0.58
LIMS3-204ENST00000482065 ACSM6Q6P461 480 aa11.45□□□□□ -0.58
LIMS3-204ENST00000482065 OSR1Q8TAX0 266 aaPredicted RBP11.45□□□□□ -0.58
LIMS3-204ENST00000482065 ACOT12Q8WYK0 555 aa11.45□□□□□ -0.58
LIMS3-204ENST00000482065 DCUN1D5Q9BTE7 237 aa11.45□□□□□ -0.58
LIMS3-204ENST00000482065 COA4Q9NYJ1 87 aa11.45□□□□□ -0.58
LIMS3-204ENST00000482065 ANKRD34BA5PLL1 514 aa11.44□□□□□ -0.58
LIMS3-204ENST00000482065 RBMXL2O75526 392 aaKnown RBP11.44□□□□□ -0.58
LIMS3-204ENST00000482065 SPNP16150 400 aa11.44□□□□□ -0.58
LIMS3-204ENST00000482065 C10orf55Q5SWW7 151 aa11.44□□□□□ -0.58
LIMS3-204ENST00000482065 HAPLN4Q86UW8 402 aa11.44□□□□□ -0.58
LIMS3-204ENST00000482065 BEST4Q8NFU0 473 aa11.44□□□□□ -0.58
LIMS3-204ENST00000482065 SRSF12Q8WXF0 261 aaKnown RBP11.44□□□□□ -0.58
LIMS3-204ENST00000482065 TMEM68Q96MH6 324 aa11.44□□□□□ -0.58
LIMS3-204ENST00000482065 GPHA2Q96T91 129 aa11.44□□□□□ -0.58
LIMS3-204ENST00000482065 ASCL2Q99929 193 aa11.44□□□□□ -0.58
LIMS3-204ENST00000482065 TINAGL1Q9GZM7 467 aaPredicted RBP11.44□□□□□ -0.58
LIMS3-204ENST00000482065 ZNF430Q9H8G1 570 aaPredicted RBP11.44□□□□□ -0.58
LIMS3-204ENST00000482065 SPATA2Q9UM82 520 aa11.44□□□□□ -0.58
LIMS3-204ENST00000482065 HUWE1Q7Z6Z7 4374 aaKnown RBP11.43□□□□□ -0.58
LIMS3-204ENST00000482065 A0A0G2JLM5 398 aa11.43□□□□□ -0.58
LIMS3-204ENST00000482065 ARPC4P59998 168 aa11.43□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 50 ms