RNA–Protein interactions for RNA: ENST00000481335.5

SQSTM1-207, Transcript of sequestosome 1, humanhuman

TSL 4

Gene SQSTM1, Length 562 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-207ENST00000481335 NOTOA8MTQ0 251 aa9.34□□□□□ -0.91
SQSTM1-207ENST00000481335 SHOXO15266 292 aa9.34□□□□□ -0.91
SQSTM1-207ENST00000481335 GP9P14770 177 aa9.34□□□□□ -0.91
SQSTM1-207ENST00000481335 SCAND1P57086 179 aa9.34□□□□□ -0.91
SQSTM1-207ENST00000481335 OR10A3P58181 314 aa9.34□□□□□ -0.91
SQSTM1-207ENST00000481335 SSBP2P81877 361 aaPredicted RBP9.34□□□□□ -0.91
SQSTM1-207ENST00000481335 PLA2G7Q13093 441 aa9.34□□□□□ -0.91
SQSTM1-207ENST00000481335 VMA21Q3ZAQ7 101 aa9.34□□□□□ -0.91
SQSTM1-207ENST00000481335 TPRA1Q86W33 373 aa9.34□□□□□ -0.91
SQSTM1-207ENST00000481335 H1FOOQ8IZA3 346 aaPredicted RBP9.34□□□□□ -0.91
SQSTM1-207ENST00000481335 GRPEL2Q8TAA5 225 aa9.34□□□□□ -0.91
SQSTM1-207ENST00000481335 DDB2Q92466 427 aa9.34□□□□□ -0.91
SQSTM1-207ENST00000481335 USMG5Q96IX5 58 aa9.34□□□□□ -0.91
SQSTM1-207ENST00000481335 DCSTAMPQ9H295 470 aa9.34□□□□□ -0.91
SQSTM1-207ENST00000481335 C3orf84H3BNL1 204 aa9.33□□□□□ -0.92
SQSTM1-207ENST00000481335 IGHV3-11P01762 117 aa9.33□□□□□ -0.92
SQSTM1-207ENST00000481335 SPNP16150 400 aa9.33□□□□□ -0.92
SQSTM1-207ENST00000481335 DUTP33316 252 aaKnown RBP9.33□□□□□ -0.92
SQSTM1-207ENST00000481335 LINC00205P59089 165 aa9.33□□□□□ -0.92
SQSTM1-207ENST00000481335 UBE2KP61086 200 aa9.33□□□□□ -0.92
SQSTM1-207ENST00000481335 FAM209BQ5JX69 171 aa9.33□□□□□ -0.92
SQSTM1-207ENST00000481335 C22orf42Q6IC83 251 aa9.33□□□□□ -0.92
SQSTM1-207ENST00000481335 ZNF645Q8N7E2 425 aa9.33□□□□□ -0.92
SQSTM1-207ENST00000481335 CASTOR1Q8WTX7 329 aa9.33□□□□□ -0.92
SQSTM1-207ENST00000481335 MS4A10Q96PG2 267 aa9.33□□□□□ -0.92
SQSTM1-207ENST00000481335 YTHDF1Q9BYJ9 559 aaKnown RBP9.33□□□□□ -0.92
SQSTM1-207ENST00000481335 TINAGL1Q9GZM7 467 aaPredicted RBP9.33□□□□□ -0.92
SQSTM1-207ENST00000481335 Q9H521 79 aa9.33□□□□□ -0.92
SQSTM1-207ENST00000481335 ZNF355PQ9NSJ1 428 aa9.33□□□□□ -0.92
SQSTM1-207ENST00000481335 A0A075B6Q4 140 aa9.32□□□□□ -0.92
SQSTM1-207ENST00000481335 IGLV1-51P01701 117 aa9.32□□□□□ -0.92
SQSTM1-207ENST00000481335 CD36P16671 472 aa9.32□□□□□ -0.92
SQSTM1-207ENST00000481335 HACD4Q5VWC8 232 aa9.32□□□□□ -0.92
SQSTM1-207ENST00000481335 OVCH2Q7RTZ1 564 aa9.32□□□□□ -0.92
SQSTM1-207ENST00000481335 BVESQ8NE79 360 aa9.32□□□□□ -0.92
SQSTM1-207ENST00000481335 C5orf30Q96GV9 206 aa9.32□□□□□ -0.92
SQSTM1-207ENST00000481335 ATG5Q9H1Y0 275 aa9.32□□□□□ -0.92
SQSTM1-207ENST00000481335 SIGLEC8Q9NYZ4 499 aa9.32□□□□□ -0.92
SQSTM1-207ENST00000481335 ZNF230Q9UIE0 474 aaPredicted RBP9.32□□□□□ -0.92
SQSTM1-207ENST00000481335 MRPS7Q9Y2R9 242 aaKnown RBP9.32□□□□□ -0.92
SQSTM1-207ENST00000481335 A8MZ25 164 aa9.31□□□□□ -0.92
SQSTM1-207ENST00000481335 TMEM127O75204 238 aa9.31□□□□□ -0.92
SQSTM1-207ENST00000481335 KLF5Q13887 457 aaPredicted RBP9.31□□□□□ -0.92
SQSTM1-207ENST00000481335 CDK10Q15131 360 aa9.31□□□□□ -0.92
SQSTM1-207ENST00000481335 PRSS8Q16651 343 aa9.31□□□□□ -0.92
SQSTM1-207ENST00000481335 TATDN3Q17R31 274 aa9.31□□□□□ -0.92
SQSTM1-207ENST00000481335 ZNF343Q6P1L6 599 aa9.31□□□□□ -0.92
SQSTM1-207ENST00000481335 CNIH2Q6PI25 160 aa9.31□□□□□ -0.92
SQSTM1-207ENST00000481335 NR2C2APQ86WQ0 139 aa9.31□□□□□ -0.92
SQSTM1-207ENST00000481335 ANKRD13BQ86YJ7 626 aa9.31□□□□□ -0.92
SQSTM1-207ENST00000481335 PHB2Q99623 299 aa9.31□□□□□ -0.92
SQSTM1-207ENST00000481335 SPIN2AQ99865 258 aa9.31□□□□□ -0.92
SQSTM1-207ENST00000481335 SPIN2BQ9BPZ2 258 aa9.31□□□□□ -0.92
SQSTM1-207ENST00000481335 TXNL4BQ9NX01 149 aaKnown RBP9.31□□□□□ -0.92
SQSTM1-207ENST00000481335 PRELID3BQ9Y3B1 194 aa9.31□□□□□ -0.92
SQSTM1-207ENST00000481335 OR2W1Q9Y3N9 320 aa9.31□□□□□ -0.92
SQSTM1-207ENST00000481335 FAM223BA6NKX1 122 aa9.3□□□□□ -0.92
SQSTM1-207ENST00000481335 SRRM4A7MD48 611 aaKnown RBP9.3□□□□□ -0.92
SQSTM1-207ENST00000481335 LINC00473A8K010 186 aa9.3□□□□□ -0.92
SQSTM1-207ENST00000481335 H0Y980 276 aa9.3□□□□□ -0.92
SQSTM1-207ENST00000481335 ACTL6BO94805 426 aa9.3□□□□□ -0.92
SQSTM1-207ENST00000481335 CRYZL1O95825 349 aa9.3□□□□□ -0.92
SQSTM1-207ENST00000481335 HLA-DQB1P01920 261 aa9.3□□□□□ -0.92
SQSTM1-207ENST00000481335 OR9G9P0C7N8 305 aa9.3□□□□□ -0.92
SQSTM1-207ENST00000481335 PSMB9P28065 219 aa9.3□□□□□ -0.92
SQSTM1-207ENST00000481335 PJVKQ0ZLH3 352 aa9.3□□□□□ -0.92
SQSTM1-207ENST00000481335 MSMO1Q15800 293 aa9.3□□□□□ -0.92
SQSTM1-207ENST00000481335 MRGPRG-AS1Q2M3A8 158 aa9.3□□□□□ -0.92
SQSTM1-207ENST00000481335 CDNFQ49AH0 187 aa9.3□□□□□ -0.92
SQSTM1-207ENST00000481335 KCTD9Q7L273 389 aa9.3□□□□□ -0.92
SQSTM1-207ENST00000481335 FAM223AQ8IWN6 122 aa9.3□□□□□ -0.92
SQSTM1-207ENST00000481335 MMD2Q8IY49 270 aa9.3□□□□□ -0.92
SQSTM1-207ENST00000481335 SPARTQ8N0X7 666 aa9.3□□□□□ -0.92
SQSTM1-207ENST00000481335 ADAD2Q8NCV1 583 aaKnown RBP9.3□□□□□ -0.92
SQSTM1-207ENST00000481335 OR5T1Q8NG75 326 aa9.3□□□□□ -0.92
SQSTM1-207ENST00000481335 OR9G4Q8NGQ1 327 aa9.3□□□□□ -0.92
SQSTM1-207ENST00000481335 VSTM2AQ8TAG5 236 aa9.3□□□□□ -0.92
SQSTM1-207ENST00000481335 SRSF12Q8WXF0 261 aaKnown RBP9.3□□□□□ -0.92
SQSTM1-207ENST00000481335 MAFIPQ8WZ33 124 aa9.3□□□□□ -0.92
SQSTM1-207ENST00000481335 HSD17B10Q99714 261 aaKnown RBP9.3□□□□□ -0.92
SQSTM1-207ENST00000481335 ZMAT4Q9H898 229 aa9.3□□□□□ -0.92
SQSTM1-207ENST00000481335 COA4Q9NYJ1 87 aa9.3□□□□□ -0.92
SQSTM1-207ENST00000481335 PEF1Q9UBV8 284 aaKnown RBP9.3□□□□□ -0.92
SQSTM1-207ENST00000481335 SSR3Q9UNL2 185 aa9.3□□□□□ -0.92
SQSTM1-207ENST00000481335 HUWE1Q7Z6Z7 4374 aaKnown RBP9.3□□□□□ -0.92
SQSTM1-207ENST00000481335 DNAH7Q8WXX0 4024 aa9.29□□□□□ -0.92
SQSTM1-207ENST00000481335 IGKV1D-8A0A087WSZ0 117 aa9.29□□□□□ -0.92
SQSTM1-207ENST00000481335 A0A0A6YYH2 397 aa9.29□□□□□ -0.92
SQSTM1-207ENST00000481335 A0A0B4J203 849 aa9.29□□□□□ -0.92
SQSTM1-207ENST00000481335 A6NJ64 397 aa9.29□□□□□ -0.92
SQSTM1-207ENST00000481335 OR2A4O95047 310 aa9.29□□□□□ -0.92
SQSTM1-207ENST00000481335 FRMD6-AS1P0C7T7 363 aa9.29□□□□□ -0.92
SQSTM1-207ENST00000481335 GNG2P59768 71 aa9.29□□□□□ -0.92
SQSTM1-207ENST00000481335 DYRK1AQ13627 763 aa9.29□□□□□ -0.92
SQSTM1-207ENST00000481335 TNXAQ16473 311 aa9.29□□□□□ -0.92
SQSTM1-207ENST00000481335 SFXN4Q6P4A7 337 aa9.29□□□□□ -0.92
SQSTM1-207ENST00000481335 SLC25A42Q86VD7 318 aa9.29□□□□□ -0.92
SQSTM1-207ENST00000481335 SBSPONQ8IVN8 264 aa9.29□□□□□ -0.92
SQSTM1-207ENST00000481335 OR4S2Q8NH73 311 aa9.29□□□□□ -0.92
SQSTM1-207ENST00000481335 RCHY1Q96PM5 261 aa9.29□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms