RNA–Protein interactions for RNA: ENST00000475146.1

CPNE1-223, Transcript of copine 1, human

TSL 3

Gene CPNE1, Length 627 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPNE1-223	ENST00000475146	C4orf3	Q8WVX3	66 aa		18.75	■□□□□ 0.59
CPNE1-223	ENST00000475146	DDB2	Q92466	427 aa		18.75	■□□□□ 0.59
CPNE1-223	ENST00000475146	ARPC1A	Q92747	370 aa		18.75	■□□□□ 0.59
CPNE1-223	ENST00000475146	P2RX4	Q99571	388 aa		18.75	■□□□□ 0.59
CPNE1-223	ENST00000475146	NAA50	Q9GZZ1	169 aa	Known RBP	18.75	■□□□□ 0.59
CPNE1-223	ENST00000475146	NECAP2	Q9NVZ3	263 aa		18.75	■□□□□ 0.59
CPNE1-223	ENST00000475146	COMMD3	Q9UBI1	195 aa		18.75	■□□□□ 0.59
CPNE1-223	ENST00000475146	RBMX2	Q9Y388	322 aa	Known RBP	18.75	■□□□□ 0.59
CPNE1-223	ENST00000475146	DUS4L	O95620	317 aa	Known RBP	18.74	■□□□□ 0.59
CPNE1-223	ENST00000475146	EGR2	P11161	476 aa	Predicted RBP	18.74	■□□□□ 0.59
CPNE1-223	ENST00000475146	FXYD3	Q14802	87 aa		18.74	■□□□□ 0.59
CPNE1-223	ENST00000475146	C19orf54	Q5BKX5	351 aa		18.74	■□□□□ 0.59
CPNE1-223	ENST00000475146	ANKRD13B	Q86YJ7	626 aa		18.74	■□□□□ 0.59
CPNE1-223	ENST00000475146	NUBP2	Q9Y5Y2	271 aa		18.74	■□□□□ 0.59
CPNE1-223	ENST00000475146	GABARAP	O95166	117 aa		18.73	■□□□□ 0.59
CPNE1-223	ENST00000475146	CNIH1	O95406	144 aa		18.73	■□□□□ 0.59
CPNE1-223	ENST00000475146	EIF4E	P06730	217 aa	Known RBP	18.73	■□□□□ 0.59
CPNE1-223	ENST00000475146	FCGR2C	P31995	323 aa		18.73	■□□□□ 0.59
CPNE1-223	ENST00000475146	ACTBL2	Q562R1	376 aa		18.73	■□□□□ 0.59
CPNE1-223	ENST00000475146	GPR107	Q5VW38	600 aa		18.73	■□□□□ 0.59
CPNE1-223	ENST00000475146	FOXB2	Q5VYV0	432 aa		18.73	■□□□□ 0.59
CPNE1-223	ENST00000475146	LFNG	Q8NES3	379 aa		18.73	■□□□□ 0.59
CPNE1-223	ENST00000475146	MYOZ3	Q8TDC0	251 aa		18.73	■□□□□ 0.59
CPNE1-223	ENST00000475146	SNAPC3	Q92966	411 aa		18.73	■□□□□ 0.59
CPNE1-223	ENST00000475146	PRELID3B	Q9Y3B1	194 aa		18.73	■□□□□ 0.59
CPNE1-223	ENST00000475146	SOX15	O60248	233 aa		18.72	■□□□□ 0.59
CPNE1-223	ENST00000475146	FCGR3B	O75015	233 aa		18.72	■□□□□ 0.59
CPNE1-223	ENST00000475146	AADAC	P22760	399 aa		18.72	■□□□□ 0.59
CPNE1-223	ENST00000475146	RAB9A	P51151	201 aa		18.72	■□□□□ 0.59
CPNE1-223	ENST00000475146	RORC	P51449	518 aa		18.72	■□□□□ 0.59
CPNE1-223	ENST00000475146	VMA21	Q3ZAQ7	101 aa		18.72	■□□□□ 0.59
CPNE1-223	ENST00000475146	OR2B11	Q5JQS5	317 aa		18.72	■□□□□ 0.59
CPNE1-223	ENST00000475146	ZNF491	Q8N8L2	437 aa		18.72	■□□□□ 0.59
CPNE1-223	ENST00000475146	CASTOR1	Q8WTX7	329 aa		18.72	■□□□□ 0.59
CPNE1-223	ENST00000475146	SECTM1	Q8WVN6	248 aa		18.72	■□□□□ 0.59
CPNE1-223	ENST00000475146	UBE2E2	Q96LR5	201 aa		18.72	■□□□□ 0.59
CPNE1-223	ENST00000475146	OR5B12	Q96R08	314 aa		18.72	■□□□□ 0.59
CPNE1-223	ENST00000475146	DCUN1D5	Q9BTE7	237 aa		18.72	■□□□□ 0.59
CPNE1-223	ENST00000475146	GNB4	Q9HAV0	340 aa		18.72	■□□□□ 0.59
CPNE1-223	ENST00000475146	VSIG4	Q9Y279	399 aa		18.72	■□□□□ 0.59
CPNE1-223	ENST00000475146	MRPS7	Q9Y2R9	242 aa	Known RBP	18.72	■□□□□ 0.59
CPNE1-223	ENST00000475146	SRRM4	A7MD48	611 aa	Known RBP	18.71	■□□□□ 0.59
CPNE1-223	ENST00000475146	ARPC1B	O15143	372 aa	Known RBP	18.71	■□□□□ 0.59
CPNE1-223	ENST00000475146	IGLV2-14	P01704	120 aa		18.71	■□□□□ 0.59
CPNE1-223	ENST00000475146	CRYGB	P07316	175 aa		18.71	■□□□□ 0.59
CPNE1-223	ENST00000475146	PJVK	Q0ZLH3	352 aa		18.71	■□□□□ 0.59
CPNE1-223	ENST00000475146	CTF1	Q16619	201 aa		18.71	■□□□□ 0.59
CPNE1-223	ENST00000475146	GPR141	Q7Z602	305 aa		18.71	■□□□□ 0.59
CPNE1-223	ENST00000475146	OR5AP2	Q8NGF4	316 aa		18.71	■□□□□ 0.59
CPNE1-223	ENST00000475146	OSR1	Q8TAX0	266 aa	Predicted RBP	18.71	■□□□□ 0.59
CPNE1-223	ENST00000475146	TCTEX1D2	Q8WW35	142 aa		18.71	■□□□□ 0.59
CPNE1-223	ENST00000475146	ACOT12	Q8WYK0	555 aa		18.71	■□□□□ 0.59
CPNE1-223	ENST00000475146	GPR61	Q9BZJ8	451 aa		18.71	■□□□□ 0.59
CPNE1-223	ENST00000475146	TAS2R8	Q9NYW2	309 aa		18.71	■□□□□ 0.59
CPNE1-223	ENST00000475146	PPY	P01298	95 aa		18.7	■□□□□ 0.58
CPNE1-223	ENST00000475146	FXYD4	P59646	89 aa		18.7	■□□□□ 0.58
CPNE1-223	ENST00000475146	RPL30	P62888	115 aa	Known RBP	18.7	■□□□□ 0.58
CPNE1-223	ENST00000475146	CDK10	Q15131	360 aa		18.7	■□□□□ 0.58
CPNE1-223	ENST00000475146	AKIRIN2	Q53H80	203 aa		18.7	■□□□□ 0.58
CPNE1-223	ENST00000475146	REC114	Q7Z4M0	266 aa		18.7	■□□□□ 0.58
CPNE1-223	ENST00000475146	OR5M8	Q8NGP6	311 aa		18.7	■□□□□ 0.58
CPNE1-223	ENST00000475146	HSD17B10	Q99714	261 aa	Known RBP	18.7	■□□□□ 0.58
CPNE1-223	ENST00000475146	MCRIP2	Q9BUT9	160 aa	Known RBP	18.7	■□□□□ 0.58
CPNE1-223	ENST00000475146	SMIM31	A0A1B0GVY4	71 aa		18.69	■□□□□ 0.58
CPNE1-223	ENST00000475146	APOA1	P02647	267 aa		18.69	■□□□□ 0.58
CPNE1-223	ENST00000475146	CD40LG	P29965	261 aa		18.69	■□□□□ 0.58
CPNE1-223	ENST00000475146	PRSS3	P35030	304 aa		18.69	■□□□□ 0.58
CPNE1-223	ENST00000475146	UBE2K	P61086	200 aa		18.69	■□□□□ 0.58
CPNE1-223	ENST00000475146	KIAA0141	Q14154	515 aa	Predicted RBP	18.69	■□□□□ 0.58
CPNE1-223	ENST00000475146	PYHIN1	Q6K0P9	492 aa		18.69	■□□□□ 0.58
CPNE1-223	ENST00000475146	IDO2	Q6ZQW0	420 aa		18.69	■□□□□ 0.58
CPNE1-223	ENST00000475146	OR11H1	Q8NG94	326 aa		18.69	■□□□□ 0.58
CPNE1-223	ENST00000475146	DPF1	Q92782	380 aa		18.69	■□□□□ 0.58
CPNE1-223	ENST00000475146	CMTM3	Q96MX0	182 aa		18.69	■□□□□ 0.58
CPNE1-223	ENST00000475146	SLC5A7	Q9GZV3	580 aa		18.69	■□□□□ 0.58
CPNE1-223	ENST00000475146	CCL28	Q9NRJ3	127 aa		18.69	■□□□□ 0.58
CPNE1-223	ENST00000475146	EHF	Q9NZC4	300 aa		18.69	■□□□□ 0.58
CPNE1-223	ENST00000475146	HPGDS	O60760	199 aa		18.68	■□□□□ 0.58
CPNE1-223	ENST00000475146	ALDH3B2	P48448	385 aa		18.68	■□□□□ 0.58
CPNE1-223	ENST00000475146	SSBP2	P81877	361 aa	Predicted RBP	18.68	■□□□□ 0.58
CPNE1-223	ENST00000475146	OVCH2	Q7RTZ1	564 aa		18.68	■□□□□ 0.58
CPNE1-223	ENST00000475146	TEX45	Q8NA69	505 aa		18.68	■□□□□ 0.58
CPNE1-223	ENST00000475146	AP3S1	Q92572	193 aa		18.68	■□□□□ 0.58
CPNE1-223	ENST00000475146	MS4A10	Q96PG2	267 aa		18.68	■□□□□ 0.58
CPNE1-223	ENST00000475146	AURKAIP1	Q9NWT8	199 aa	Predicted RBP	18.68	■□□□□ 0.58
CPNE1-223	ENST00000475146	TNFSF12	O43508	249 aa		18.67	■□□□□ 0.58
CPNE1-223	ENST00000475146	HOXD3	P31249	432 aa	Predicted RBP	18.67	■□□□□ 0.58
CPNE1-223	ENST00000475146	TPPP2	P59282	170 aa		18.67	■□□□□ 0.58
CPNE1-223	ENST00000475146	HERV-K104	P61576	105 aa		18.67	■□□□□ 0.58
CPNE1-223	ENST00000475146	MZT2A	Q6P582	158 aa		18.67	■□□□□ 0.58
CPNE1-223	ENST00000475146	ZNF66	Q6ZN08	573 aa		18.67	■□□□□ 0.58
CPNE1-223	ENST00000475146	MFSD4A	Q8N468	514 aa		18.67	■□□□□ 0.58
CPNE1-223	ENST00000475146	OR4S2	Q8NH73	311 aa		18.67	■□□□□ 0.58
CPNE1-223	ENST00000475146	GPHA2	Q96T91	129 aa		18.67	■□□□□ 0.58
CPNE1-223	ENST00000475146	ZNF355P	Q9NSJ1	428 aa		18.67	■□□□□ 0.58
CPNE1-223	ENST00000475146	ANAPC10	Q9UM13	185 aa		18.67	■□□□□ 0.58
CPNE1-223	ENST00000475146	FAM25A	B3EWG3	89 aa		18.66	■□□□□ 0.58
CPNE1-223	ENST00000475146	FAM25C	B3EWG5	89 aa		18.66	■□□□□ 0.58
CPNE1-223	ENST00000475146	FAM25G	B3EWG6	89 aa		18.66	■□□□□ 0.58
CPNE1-223	ENST00000475146	SAA1	P0DJI8	122 aa	Predicted RBP	18.66	■□□□□ 0.58

Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms