RNA–Protein interactions for RNA: ENST00000471567.1

SDC3-203, Transcript of syndecan 3, humanhuman

TSL 3

Gene SDC3, Length 589 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-203ENST00000471567 HARBI1Q96MB7 349 aa12.05□□□□□ -0.48
SDC3-203ENST00000471567 DCUN1D5Q9BTE7 237 aa12.05□□□□□ -0.48
SDC3-203ENST00000471567 OR51J1Q9H342 316 aa12.05□□□□□ -0.48
SDC3-203ENST00000471567 METTL1Q9UBP6 276 aaKnown RBP12.05□□□□□ -0.48
SDC3-203ENST00000471567 SHOXO15266 292 aa12.04□□□□□ -0.48
SDC3-203ENST00000471567 IGLV2-23P01705 113 aa12.04□□□□□ -0.48
SDC3-203ENST00000471567 OPN1MWP04001 364 aa12.04□□□□□ -0.48
SDC3-203ENST00000471567 OPN1MW2P0DN77 364 aa12.04□□□□□ -0.48
SDC3-203ENST00000471567 OPN1MW3P0DN78 364 aa12.04□□□□□ -0.48
SDC3-203ENST00000471567 TSPAN5P62079 268 aa12.04□□□□□ -0.48
SDC3-203ENST00000471567 RPL30P62888 115 aaKnown RBP12.04□□□□□ -0.48
SDC3-203ENST00000471567 IL18Q14116 193 aa12.04□□□□□ -0.48
SDC3-203ENST00000471567 RNASE12Q5GAN4 147 aaKnown RBP12.04□□□□□ -0.48
SDC3-203ENST00000471567 TMEM17Q86X19 198 aa12.04□□□□□ -0.48
SDC3-203ENST00000471567 SMIM4Q8WVI0 70 aa12.04□□□□□ -0.48
SDC3-203ENST00000471567 CITED2Q99967 270 aaPredicted RBP12.04□□□□□ -0.48
SDC3-203ENST00000471567 SOSTQ9BQB4 213 aa12.04□□□□□ -0.48
SDC3-203ENST00000471567 LINC00527Q9UJ94 153 aa12.04□□□□□ -0.48
SDC3-203ENST00000471567 TET2Q6N021 2002 aaPredicted RBP12.04□□□□□ -0.48
SDC3-203ENST00000471567 SLC25A17O43808 307 aa12.03□□□□□ -0.48
SDC3-203ENST00000471567 FCGR3BO75015 233 aa12.03□□□□□ -0.48
SDC3-203ENST00000471567 CRYZL1O95825 349 aa12.03□□□□□ -0.48
SDC3-203ENST00000471567 CRYGBP07316 175 aa12.03□□□□□ -0.48
SDC3-203ENST00000471567 CSF1P09603 554 aa12.03□□□□□ -0.48
SDC3-203ENST00000471567 GNRHRP30968 328 aa12.03□□□□□ -0.48
SDC3-203ENST00000471567 KIR2DS2P43631 304 aa12.03□□□□□ -0.48
SDC3-203ENST00000471567 CX3CL1P78423 397 aa12.03□□□□□ -0.48
SDC3-203ENST00000471567 DGCR2P98153 550 aa12.03□□□□□ -0.48
SDC3-203ENST00000471567 TCTEX1D4Q5JR98 221 aa12.03□□□□□ -0.48
SDC3-203ENST00000471567 LPCAT3Q6P1A2 487 aa12.03□□□□□ -0.48
SDC3-203ENST00000471567 C10orf99Q6UWK7 81 aa12.03□□□□□ -0.48
SDC3-203ENST00000471567 ZNF562Q6V9R5 426 aa12.03□□□□□ -0.48
SDC3-203ENST00000471567 ZNF329Q86UD4 541 aa12.03□□□□□ -0.48
SDC3-203ENST00000471567 TMEM229BQ8NBD8 167 aa12.03□□□□□ -0.48
SDC3-203ENST00000471567 TCTEX1D2Q8WW35 142 aa12.03□□□□□ -0.48
SDC3-203ENST00000471567 TAS2R8Q9NYW2 309 aa12.03□□□□□ -0.48
SDC3-203ENST00000471567 TCRBV4S1A1TA0A5B7 111 aa12.02□□□□□ -0.49
SDC3-203ENST00000471567 FABP12A6NFH5 140 aa12.02□□□□□ -0.49
SDC3-203ENST00000471567 SRRM4A7MD48 611 aaKnown RBP12.02□□□□□ -0.49
SDC3-203ENST00000471567 FCN1O00602 326 aa12.02□□□□□ -0.49
SDC3-203ENST00000471567 ATP6V0E1O15342 81 aa12.02□□□□□ -0.49
SDC3-203ENST00000471567 GSTZ1O43708 216 aaPredicted RBP12.02□□□□□ -0.49
SDC3-203ENST00000471567 CD74P04233 296 aa12.02□□□□□ -0.49
SDC3-203ENST00000471567 IFNA6P05013 189 aa12.02□□□□□ -0.49
SDC3-203ENST00000471567 VDAC1P21796 283 aa12.02□□□□□ -0.49
SDC3-203ENST00000471567 S100A5P33763 92 aa12.02□□□□□ -0.49
SDC3-203ENST00000471567 CRIP2P52943 208 aaPredicted RBP12.02□□□□□ -0.49
SDC3-203ENST00000471567 TAS2R19P59542 299 aa12.02□□□□□ -0.49
SDC3-203ENST00000471567 UBE2KP61086 200 aa12.02□□□□□ -0.49
SDC3-203ENST00000471567 CATR1Q13166 79 aa12.02□□□□□ -0.49
SDC3-203ENST00000471567 VMA21Q3ZAQ7 101 aa12.02□□□□□ -0.49
SDC3-203ENST00000471567 RNASE10Q5GAN6 216 aaKnown RBP12.02□□□□□ -0.49
SDC3-203ENST00000471567 TEX38Q6PEX7 206 aa12.02□□□□□ -0.49
SDC3-203ENST00000471567 ZNF818PQ6ZRF7 136 aa12.02□□□□□ -0.49
SDC3-203ENST00000471567 PPP1R27Q86WC6 154 aa12.02□□□□□ -0.49
SDC3-203ENST00000471567 ARRDC1Q8N5I2 433 aa12.02□□□□□ -0.49
SDC3-203ENST00000471567 TEX45Q8NA69 505 aa12.02□□□□□ -0.49
SDC3-203ENST00000471567 OR4S2Q8NH73 311 aa12.02□□□□□ -0.49
SDC3-203ENST00000471567 TSSC4Q9Y5U2 329 aaPredicted RBP12.02□□□□□ -0.49
SDC3-203ENST00000471567 DPPA5A6NC42 116 aa12.01□□□□□ -0.49
SDC3-203ENST00000471567 ADARB2-AS1A8MUL3 147 aa12.01□□□□□ -0.49
SDC3-203ENST00000471567 M0QYG6 137 aa12.01□□□□□ -0.49
SDC3-203ENST00000471567 RBFOX2O43251 390 aaKnown RBP eCLIP12.01□□□□□ -0.49
SDC3-203ENST00000471567 TNFSF12O43508 249 aa12.01□□□□□ -0.49
SDC3-203ENST00000471567 CD3DP04234 171 aa12.01□□□□□ -0.49
SDC3-203ENST00000471567 ELANEP08246 267 aa12.01□□□□□ -0.49
SDC3-203ENST00000471567 UCP3P55916 312 aa12.01□□□□□ -0.49
SDC3-203ENST00000471567 CFHR3Q02985 330 aa12.01□□□□□ -0.49
SDC3-203ENST00000471567 TREML4Q6UXN2 200 aa12.01□□□□□ -0.49
SDC3-203ENST00000471567 CMTM1Q8IZ96 169 aa12.01□□□□□ -0.49
SDC3-203ENST00000471567 CD300LFQ8TDQ1 290 aa12.01□□□□□ -0.49
SDC3-203ENST00000471567 CLCC1Q96S66 551 aa12.01□□□□□ -0.49
SDC3-203ENST00000471567 FXYD6Q9H0Q3 95 aa12.01□□□□□ -0.49
SDC3-203ENST00000471567 PARP11Q9NR21 331 aa12.01□□□□□ -0.49
SDC3-203ENST00000471567 ZFP57Q9NU63 452 aa12.01□□□□□ -0.49
SDC3-203ENST00000471567 TRAV41A0A0B4J266 112 aa12□□□□□ -0.49
SDC3-203ENST00000471567 GPR31O00270 319 aa12□□□□□ -0.49
SDC3-203ENST00000471567 CA2P00918 260 aa12□□□□□ -0.49
SDC3-203ENST00000471567 IGHG4P01861 327 aa12□□□□□ -0.49
SDC3-203ENST00000471567 BRWD1-AS2P59051 145 aa12□□□□□ -0.49
SDC3-203ENST00000471567 NDPQ00604 133 aa12□□□□□ -0.49
SDC3-203ENST00000471567 TMEM267Q0VDI3 215 aaPredicted RBP12□□□□□ -0.49
SDC3-203ENST00000471567 FOXE3Q13461 319 aa12□□□□□ -0.49
SDC3-203ENST00000471567 NSUN5P1Q3KNT7 163 aa12□□□□□ -0.49
SDC3-203ENST00000471567 OR2B11Q5JQS5 317 aa12□□□□□ -0.49
SDC3-203ENST00000471567 HIST2H2BDQ6DRA6 164 aa12□□□□□ -0.49
SDC3-203ENST00000471567 STEAP1BQ6NZ63 245 aa12□□□□□ -0.49
SDC3-203ENST00000471567 TCTEX1D1Q8N7M0 179 aa12□□□□□ -0.49
SDC3-203ENST00000471567 RNF152Q8N8N0 203 aa12□□□□□ -0.49
SDC3-203ENST00000471567 GPHA2Q96T91 129 aa12□□□□□ -0.49
SDC3-203ENST00000471567 AIFM2Q9BRQ8 373 aa12□□□□□ -0.49
SDC3-203ENST00000471567 TINAGL1Q9GZM7 467 aaPredicted RBP12□□□□□ -0.49
SDC3-203ENST00000471567 BATF3Q9NR55 127 aa12□□□□□ -0.49
SDC3-203ENST00000471567 TPSG1Q9NRR2 321 aa12□□□□□ -0.49
SDC3-203ENST00000471567 NUBP2Q9Y5Y2 271 aa12□□□□□ -0.49
SDC3-203ENST00000471567 CREBL2O60519 120 aaPredicted RBP11.99□□□□□ -0.49
SDC3-203ENST00000471567 PGLYRP1O75594 196 aaPredicted RBP11.99□□□□□ -0.49
SDC3-203ENST00000471567 RAB3DO95716 219 aa11.99□□□□□ -0.49
SDC3-203ENST00000471567 TSPAN15O95858 294 aa11.99□□□□□ -0.49
SDC3-203ENST00000471567 HRASP01112 189 aa11.99□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms