RNA–Protein interactions for RNA: ENST00000464168.5

USP4-208, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 4

Gene USP4, Length 601 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-208ENST00000464168 HIPK2Q9H2X6 1198 aa17.14■□□□□ 0.33
USP4-208ENST00000464168 KCNK7Q9Y2U2 307 aa17.14■□□□□ 0.33
USP4-208ENST00000464168 SHISA3A0PJX4 238 aa17.13■□□□□ 0.33
USP4-208ENST00000464168 TAGLNQ01995 201 aaKnown RBP17.13■□□□□ 0.33
USP4-208ENST00000464168 PLA2G7Q13093 441 aa17.13■□□□□ 0.33
USP4-208ENST00000464168 IRF3Q14653 427 aa17.13■□□□□ 0.33
USP4-208ENST00000464168 C2orf76Q3KRA6 126 aa17.13■□□□□ 0.33
USP4-208ENST00000464168 OGFRL1Q5TC84 451 aaPredicted RBP17.13■□□□□ 0.33
USP4-208ENST00000464168 UFD1Q92890 307 aa17.13■□□□□ 0.33
USP4-208ENST00000464168 FAM3DQ96BQ1 224 aa17.13■□□□□ 0.33
USP4-208ENST00000464168 PHB2Q99623 299 aa17.13■□□□□ 0.33
USP4-208ENST00000464168 CABLES2Q9BTV7 478 aa17.13■□□□□ 0.33
USP4-208ENST00000464168 CEPT1Q9Y6K0 416 aa17.13■□□□□ 0.33
USP4-208ENST00000464168 TRBV6-7A0A0A0MS04 114 aa17.12■□□□□ 0.33
USP4-208ENST00000464168 OR9G9P0C7N8 305 aa17.12■□□□□ 0.33
USP4-208ENST00000464168 GSTT2P0CG29 244 aa17.12■□□□□ 0.33
USP4-208ENST00000464168 GSTT2BP0CG30 244 aa17.12■□□□□ 0.33
USP4-208ENST00000464168 CBX3Q13185 183 aa17.12■□□□□ 0.33
USP4-208ENST00000464168 PRSS8Q16651 343 aa17.12■□□□□ 0.33
USP4-208ENST00000464168 RTL8BQ17RB0 113 aa17.12■□□□□ 0.33
USP4-208ENST00000464168 TEX45Q8NA69 505 aa17.12■□□□□ 0.33
USP4-208ENST00000464168 OR2K2Q8NGT1 345 aa17.12■□□□□ 0.33
USP4-208ENST00000464168 OR10J5Q8NHC4 309 aa17.12■□□□□ 0.33
USP4-208ENST00000464168 PLEKHA3Q9HB20 300 aa17.12■□□□□ 0.33
USP4-208ENST00000464168 AKIP1Q9NQ31 210 aa17.12■□□□□ 0.33
USP4-208ENST00000464168 PEMTQ9UBM1 199 aa17.12■□□□□ 0.33
USP4-208ENST00000464168 A0A0B4J203 849 aa17.11■□□□□ 0.33
USP4-208ENST00000464168 BMPR1BO00238 502 aa17.11■□□□□ 0.33
USP4-208ENST00000464168 DENRO43583 198 aaKnown RBP17.11■□□□□ 0.33
USP4-208ENST00000464168 FCGR3AP08637 254 aa17.11■□□□□ 0.33
USP4-208ENST00000464168 UBE2KP61086 200 aa17.11■□□□□ 0.33
USP4-208ENST00000464168 RPS25P62851 125 aaKnown RBP17.11■□□□□ 0.33
USP4-208ENST00000464168 RHOGP84095 191 aa17.11■□□□□ 0.33
USP4-208ENST00000464168 TPBGQ13641 420 aa17.11■□□□□ 0.33
USP4-208ENST00000464168 DDB2Q92466 427 aa17.11■□□□□ 0.33
USP4-208ENST00000464168 FAM110AQ9BQ89 295 aa17.11■□□□□ 0.33
USP4-208ENST00000464168 NKX1-2Q9UD57 310 aaPredicted RBP17.11■□□□□ 0.33
USP4-208ENST00000464168 ZNF785A8K8V0 405 aa17.1■□□□□ 0.33
USP4-208ENST00000464168 AIREO43918 545 aa17.1■□□□□ 0.33
USP4-208ENST00000464168 ARL6IP5O75915 188 aa17.1■□□□□ 0.33
USP4-208ENST00000464168 JTBO76095 146 aa17.1■□□□□ 0.33
USP4-208ENST00000464168 PRH1P02810 166 aa17.1■□□□□ 0.33
USP4-208ENST00000464168 RRASP10301 218 aa17.1■□□□□ 0.33
USP4-208ENST00000464168 CD81P60033 236 aa17.1■□□□□ 0.33
USP4-208ENST00000464168 TNXAQ16473 311 aa17.1■□□□□ 0.33
USP4-208ENST00000464168 VMA21Q3ZAQ7 101 aa17.1■□□□□ 0.33
USP4-208ENST00000464168 CD300EQ496F6 205 aaPredicted RBP17.1■□□□□ 0.33
USP4-208ENST00000464168 IDO2Q6ZQW0 420 aa17.1■□□□□ 0.33
USP4-208ENST00000464168 SRSF12Q8WXF0 261 aaKnown RBP17.1■□□□□ 0.33
USP4-208ENST00000464168 RAB3CQ96E17 227 aa17.1■□□□□ 0.33
USP4-208ENST00000464168 ZNF230Q9UIE0 474 aaPredicted RBP17.1■□□□□ 0.33
USP4-208ENST00000464168 TRBV9A0A0B4J1U6 114 aa17.09■□□□□ 0.33
USP4-208ENST00000464168 TMEM272A0A1B0GTI8 110 aa17.09■□□□□ 0.33
USP4-208ENST00000464168 CASQ2O14958 399 aaPredicted RBP17.09■□□□□ 0.33
USP4-208ENST00000464168 DIRAS3O95661 229 aa17.09■□□□□ 0.33
USP4-208ENST00000464168 MRPS15P82914 257 aaKnown RBP17.09■□□□□ 0.33
USP4-208ENST00000464168 ZNF45Q02386 682 aa17.09■□□□□ 0.33
USP4-208ENST00000464168 IL17DQ8TAD2 202 aa17.09■□□□□ 0.33
USP4-208ENST00000464168 MAFIPQ8WZ33 124 aa17.09■□□□□ 0.33
USP4-208ENST00000464168 NEURL2Q9BR09 285 aa17.09■□□□□ 0.33
USP4-208ENST00000464168 SCN3BQ9NY72 215 aa17.09■□□□□ 0.33
USP4-208ENST00000464168 RAB22AQ9UL26 194 aa17.09■□□□□ 0.33
USP4-208ENST00000464168 RBMY1BA6NDE4 496 aaKnown RBP17.08■□□□□ 0.32
USP4-208ENST00000464168 RBMY1EA6NEQ0 496 aaKnown RBP17.08■□□□□ 0.32
USP4-208ENST00000464168 FAM223BA6NKX1 122 aa17.08■□□□□ 0.32
USP4-208ENST00000464168 LINC00473A8K010 186 aa17.08■□□□□ 0.32
USP4-208ENST00000464168 TPPPO94811 219 aa17.08■□□□□ 0.32
USP4-208ENST00000464168 CRYZL1O95825 349 aa17.08■□□□□ 0.32
USP4-208ENST00000464168 CD7P09564 240 aa17.08■□□□□ 0.32
USP4-208ENST00000464168 RBMY1DP0C7P1 496 aaKnown RBP17.08■□□□□ 0.32
USP4-208ENST00000464168 HSMCR30P0CW71 290 aa17.08■□□□□ 0.32
USP4-208ENST00000464168 CALRP27797 417 aaKnown RBP17.08■□□□□ 0.32
USP4-208ENST00000464168 DUTP33316 252 aaKnown RBP17.08■□□□□ 0.32
USP4-208ENST00000464168 ATP5G2Q06055 141 aa17.08■□□□□ 0.32
USP4-208ENST00000464168 EXOSC2Q13868 293 aaKnown RBP17.08■□□□□ 0.32
USP4-208ENST00000464168 FAM223AQ8IWN6 122 aa17.08■□□□□ 0.32
USP4-208ENST00000464168 LAX1Q8IWV1 398 aa17.08■□□□□ 0.32
USP4-208ENST00000464168 V9GY05 133 aa17.08■□□□□ 0.32
USP4-208ENST00000464168 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP17.07■□□□□ 0.32
USP4-208ENST00000464168 MPPED1O15442 326 aa17.07■□□□□ 0.32
USP4-208ENST00000464168 TRAM1Q15629 374 aa17.07■□□□□ 0.32
USP4-208ENST00000464168 DEFB125Q8N687 156 aa17.07■□□□□ 0.32
USP4-208ENST00000464168 ACOT12Q8WYK0 555 aa17.07■□□□□ 0.32
USP4-208ENST00000464168 ADTRPQ96IZ2 230 aa17.07■□□□□ 0.32
USP4-208ENST00000464168 ZNF430Q9H8G1 570 aaPredicted RBP17.07■□□□□ 0.32
USP4-208ENST00000464168 RBM7Q9Y580 266 aaKnown RBP17.07■□□□□ 0.32
USP4-208ENST00000464168 GNB3P16520 340 aa17.06■□□□□ 0.32
USP4-208ENST00000464168 FABP5Q01469 135 aa17.06■□□□□ 0.32
USP4-208ENST00000464168 DEFB114Q30KQ6 69 aa17.06■□□□□ 0.32
USP4-208ENST00000464168 HES5Q5TA89 166 aa17.06■□□□□ 0.32
USP4-208ENST00000464168 OSR1Q8TAX0 266 aaPredicted RBP17.06■□□□□ 0.32
USP4-208ENST00000464168 GINS4Q9BRT9 223 aa17.06■□□□□ 0.32
USP4-208ENST00000464168 WFDC10AQ9H1F0 79 aa17.06■□□□□ 0.32
USP4-208ENST00000464168 SLC2A8Q9NY64 477 aa17.06■□□□□ 0.32
USP4-208ENST00000464168 DMRT1Q9Y5R6 373 aa17.06■□□□□ 0.32
USP4-208ENST00000464168 ALMS1Q8TCU4 4167 aa17.06■□□□□ 0.32
USP4-208ENST00000464168 MFNGO00587 321 aa17.05■□□□□ 0.32
USP4-208ENST00000464168 PSMA1P25786 263 aaKnown RBP17.05■□□□□ 0.32
USP4-208ENST00000464168 H1FOOQ8IZA3 346 aaPredicted RBP17.05■□□□□ 0.32
USP4-208ENST00000464168 TTC9CQ8N5M4 171 aa17.05■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms