RNA–Protein interactions for RNA: ENST00000459756.5

COL7A1-203, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 818 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-203ENST00000459756 COMMD3Q9UBI1 195 aa12.55□□□□□ -0.4
COL7A1-203ENST00000459756 ANXA10Q9UJ72 324 aa12.55□□□□□ -0.4
COL7A1-203ENST00000459756 SPATA2Q9UM82 520 aa12.55□□□□□ -0.4
COL7A1-203ENST00000459756 OR2W1Q9Y3N9 320 aa12.55□□□□□ -0.4
COL7A1-203ENST00000459756 TRAV18A0A075B6X5 111 aa12.54□□□□□ -0.4
COL7A1-203ENST00000459756 SOX15O60248 233 aa12.54□□□□□ -0.4
COL7A1-203ENST00000459756 SLC22A5O76082 557 aa12.54□□□□□ -0.4
COL7A1-203ENST00000459756 IGLV2-23P01705 113 aa12.54□□□□□ -0.4
COL7A1-203ENST00000459756 HOXD3P31249 432 aaPredicted RBP12.54□□□□□ -0.4
COL7A1-203ENST00000459756 DUTP33316 252 aaKnown RBP12.54□□□□□ -0.4
COL7A1-203ENST00000459756 RORCP51449 518 aa12.54□□□□□ -0.4
COL7A1-203ENST00000459756 LUMP51884 338 aaPredicted RBP12.54□□□□□ -0.4
COL7A1-203ENST00000459756 KRTAP10-11P60412 298 aa12.54□□□□□ -0.4
COL7A1-203ENST00000459756 FXYD3Q14802 87 aa12.54□□□□□ -0.4
COL7A1-203ENST00000459756 TMEM177Q53S58 311 aa12.54□□□□□ -0.4
COL7A1-203ENST00000459756 ACTBL2Q562R1 376 aa12.54□□□□□ -0.4
COL7A1-203ENST00000459756 UNQ5815/PRO19632Q6UWF5 114 aa12.54□□□□□ -0.4
COL7A1-203ENST00000459756 SAMD12Q8N8I0 201 aa12.54□□□□□ -0.4
COL7A1-203ENST00000459756 BVESQ8NE79 360 aa12.54□□□□□ -0.4
COL7A1-203ENST00000459756 OR11H1Q8NG94 326 aa12.54□□□□□ -0.4
COL7A1-203ENST00000459756 DDB2Q92466 427 aa12.54□□□□□ -0.4
COL7A1-203ENST00000459756 ARPC1AQ92747 370 aa12.54□□□□□ -0.4
COL7A1-203ENST00000459756 ISOC1Q96CN7 298 aa12.54□□□□□ -0.4
COL7A1-203ENST00000459756 HARBI1Q96MB7 349 aa12.54□□□□□ -0.4
COL7A1-203ENST00000459756 TPSG1Q9NRR2 321 aa12.54□□□□□ -0.4
COL7A1-203ENST00000459756 ZMAT5Q9UDW3 170 aaKnown RBP12.54□□□□□ -0.4
COL7A1-203ENST00000459756 I3L521 148 aa12.53□□□□□ -0.4
COL7A1-203ENST00000459756 SHOXO15266 292 aa12.53□□□□□ -0.4
COL7A1-203ENST00000459756 HLA-DQB1P01920 261 aa12.53□□□□□ -0.4
COL7A1-203ENST00000459756 NFYAP23511 347 aaPredicted RBP12.53□□□□□ -0.4
COL7A1-203ENST00000459756 CD40LGP29965 261 aa12.53□□□□□ -0.4
COL7A1-203ENST00000459756 TMBIM6P55061 237 aa12.53□□□□□ -0.4
COL7A1-203ENST00000459756 ZNF645Q8N7E2 425 aa12.53□□□□□ -0.4
COL7A1-203ENST00000459756 LFNGQ8NES3 379 aa12.53□□□□□ -0.4
COL7A1-203ENST00000459756 OR1N2Q8NGR9 330 aa12.53□□□□□ -0.4
COL7A1-203ENST00000459756 FAM103A1Q9BTL3 118 aaKnown RBP12.53□□□□□ -0.4
COL7A1-203ENST00000459756 H3BMQ9 156 aa12.52□□□□□ -0.41
COL7A1-203ENST00000459756 CNIH1O95406 144 aa12.52□□□□□ -0.41
COL7A1-203ENST00000459756 CRYGBP07316 175 aa12.52□□□□□ -0.41
COL7A1-203ENST00000459756 OR8U8P0C7N1 319 aa12.52□□□□□ -0.41
COL7A1-203ENST00000459756 UBE2NLQ5JXB2 153 aa12.52□□□□□ -0.41
COL7A1-203ENST00000459756 GRPEL2Q8TAA5 225 aa12.52□□□□□ -0.41
COL7A1-203ENST00000459756 OR5B12Q96R08 314 aa12.52□□□□□ -0.41
COL7A1-203ENST00000459756 AUNIPQ9H7T9 357 aa12.52□□□□□ -0.41
COL7A1-203ENST00000459756 CEPT1Q9Y6K0 416 aa12.52□□□□□ -0.41
COL7A1-203ENST00000459756 LINC00473A8K010 186 aa12.51□□□□□ -0.41
COL7A1-203ENST00000459756 J3QRK9 145 aa12.51□□□□□ -0.41
COL7A1-203ENST00000459756 K7EIL1 84 aa12.51□□□□□ -0.41
COL7A1-203ENST00000459756 ARPC1BO15143 372 aaKnown RBP12.51□□□□□ -0.41
COL7A1-203ENST00000459756 CRYZL1O95825 349 aa12.51□□□□□ -0.41
COL7A1-203ENST00000459756 ARPC4P59998 168 aa12.51□□□□□ -0.41
COL7A1-203ENST00000459756 GNB1P62873 340 aa12.51□□□□□ -0.41
COL7A1-203ENST00000459756 ZNF616Q08AN1 781 aa12.51□□□□□ -0.41
COL7A1-203ENST00000459756 PJVKQ0ZLH3 352 aa12.51□□□□□ -0.41
COL7A1-203ENST00000459756 HOGA1Q86XE5 327 aa12.51□□□□□ -0.41
COL7A1-203ENST00000459756 TEX45Q8NA69 505 aa12.51□□□□□ -0.41
COL7A1-203ENST00000459756 BEST4Q8NFU0 473 aa12.51□□□□□ -0.41
COL7A1-203ENST00000459756 OSR1Q8TAX0 266 aaPredicted RBP12.51□□□□□ -0.41
COL7A1-203ENST00000459756 AP3S1Q92572 193 aa12.51□□□□□ -0.41
COL7A1-203ENST00000459756 S100A16Q96FQ6 103 aaKnown RBP12.51□□□□□ -0.41
COL7A1-203ENST00000459756 SLA2Q9H6Q3 261 aa12.51□□□□□ -0.41
COL7A1-203ENST00000459756 RBMX2Q9Y388 322 aaKnown RBP12.51□□□□□ -0.41
COL7A1-203ENST00000459756 IGKV1D-13A0A0B4J2D9 117 aa12.5□□□□□ -0.41
COL7A1-203ENST00000459756 SRRM4A7MD48 611 aaKnown RBP12.5□□□□□ -0.41
COL7A1-203ENST00000459756 XRCC3O43542 346 aa12.5□□□□□ -0.41
COL7A1-203ENST00000459756 HPGDSO60760 199 aa12.5□□□□□ -0.41
COL7A1-203ENST00000459756 TUSC2O75896 110 aa12.5□□□□□ -0.41
COL7A1-203ENST00000459756 EIF4EP06730 217 aaKnown RBP12.5□□□□□ -0.41
COL7A1-203ENST00000459756 IGKV1-13P0DP09 117 aa12.5□□□□□ -0.41
COL7A1-203ENST00000459756 ZNF182P17025 639 aaPredicted RBP12.5□□□□□ -0.41
COL7A1-203ENST00000459756 CBX5P45973 191 aa12.5□□□□□ -0.41
COL7A1-203ENST00000459756 UBE2KP61086 200 aa12.5□□□□□ -0.41
COL7A1-203ENST00000459756 SSBP2P81877 361 aaPredicted RBP12.5□□□□□ -0.41
COL7A1-203ENST00000459756 VMA21Q3ZAQ7 101 aa12.5□□□□□ -0.41
COL7A1-203ENST00000459756 C9orf66Q5T8R8 295 aa12.5□□□□□ -0.41
COL7A1-203ENST00000459756 CASTOR1Q8WTX7 329 aa12.5□□□□□ -0.41
COL7A1-203ENST00000459756 KCTD12Q96CX2 325 aaKnown RBP12.5□□□□□ -0.41
COL7A1-203ENST00000459756 TMEM68Q96MH6 324 aa12.5□□□□□ -0.41
COL7A1-203ENST00000459756 MRPS7Q9Y2R9 242 aaKnown RBP12.5□□□□□ -0.41
COL7A1-203ENST00000459756 PRELID3BQ9Y3B1 194 aa12.5□□□□□ -0.41
COL7A1-203ENST00000459756 WI2-2373I1.2A0A1W2PRP0 233 aa12.49□□□□□ -0.41
COL7A1-203ENST00000459756 FAM25AB3EWG3 89 aa12.49□□□□□ -0.41
COL7A1-203ENST00000459756 FAM25CB3EWG5 89 aa12.49□□□□□ -0.41
COL7A1-203ENST00000459756 FAM25GB3EWG6 89 aa12.49□□□□□ -0.41
COL7A1-203ENST00000459756 SEC14L6B5MCN3 397 aa12.49□□□□□ -0.41
COL7A1-203ENST00000459756 H3BUA1 57 aa12.49□□□□□ -0.41
COL7A1-203ENST00000459756 IGLV2-14P01704 120 aa12.49□□□□□ -0.41
COL7A1-203ENST00000459756 LGALS1P09382 135 aaKnown RBP12.49□□□□□ -0.41
COL7A1-203ENST00000459756 PTHLHP12272 177 aa12.49□□□□□ -0.41
COL7A1-203ENST00000459756 TPPP2P59282 170 aa12.49□□□□□ -0.41
COL7A1-203ENST00000459756 DGCR2P98153 550 aa12.49□□□□□ -0.41
COL7A1-203ENST00000459756 TMEM69Q5SWH9 247 aa12.49□□□□□ -0.41
COL7A1-203ENST00000459756 ASPHD1Q5U4P2 390 aa12.49□□□□□ -0.41
COL7A1-203ENST00000459756 MZT2AQ6P582 158 aa12.49□□□□□ -0.41
COL7A1-203ENST00000459756 KCTD9Q7L273 389 aa12.49□□□□□ -0.41
COL7A1-203ENST00000459756 OVCH2Q7RTZ1 564 aa12.49□□□□□ -0.41
COL7A1-203ENST00000459756 GVQW1Q8N7I0 195 aa12.49□□□□□ -0.41
COL7A1-203ENST00000459756 ACOT12Q8WYK0 555 aa12.49□□□□□ -0.41
COL7A1-203ENST00000459756 MS4A10Q96PG2 267 aa12.49□□□□□ -0.41
COL7A1-203ENST00000459756 HSD17B10Q99714 261 aaKnown RBP12.49□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms