RNA–Protein interactions for RNA: ENST00000455596.5

HMGB3-205, Transcript of high mobility group box 3, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene HMGB3, Length 793 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-205ENST00000455596 LUMP51884 338 aaPredicted RBP16.47■□□□□ 0.23
HMGB3-205ENST00000455596 DGCR2P98153 550 aa16.47■□□□□ 0.23
HMGB3-205ENST00000455596 ZNF645Q8N7E2 425 aa16.47■□□□□ 0.23
HMGB3-205ENST00000455596 GRPEL2Q8TAA5 225 aa16.47■□□□□ 0.23
HMGB3-205ENST00000455596 DDB2Q92466 427 aa16.47■□□□□ 0.23
HMGB3-205ENST00000455596 ANXA10Q9UJ72 324 aa16.47■□□□□ 0.23
HMGB3-205ENST00000455596 TRAV18A0A075B6X5 111 aa16.46■□□□□ 0.23
HMGB3-205ENST00000455596 A0A087WXM4 84 aa16.46■□□□□ 0.23
HMGB3-205ENST00000455596 A0A0A6YYH2 397 aa16.46■□□□□ 0.23
HMGB3-205ENST00000455596 A6NJ64 397 aa16.46■□□□□ 0.23
HMGB3-205ENST00000455596 ARPC1BO15143 372 aaKnown RBP16.46■□□□□ 0.23
HMGB3-205ENST00000455596 RAMP3O60896 148 aa16.46■□□□□ 0.23
HMGB3-205ENST00000455596 TNFAIP8O95379 198 aa16.46■□□□□ 0.23
HMGB3-205ENST00000455596 CRYGBP07316 175 aa16.46■□□□□ 0.23
HMGB3-205ENST00000455596 ASPHD1Q5U4P2 390 aa16.46■□□□□ 0.23
HMGB3-205ENST00000455596 TSPAN14Q8NG11 270 aa16.46■□□□□ 0.23
HMGB3-205ENST00000455596 SLA2Q9H6Q3 261 aa16.46■□□□□ 0.23
HMGB3-205ENST00000455596 SPATA2Q9UM82 520 aa16.46■□□□□ 0.23
HMGB3-205ENST00000455596 LINC00473A8K010 186 aa16.45■□□□□ 0.22
HMGB3-205ENST00000455596 SLC22A5O76082 557 aa16.45■□□□□ 0.22
HMGB3-205ENST00000455596 HLA-DQB1P01920 261 aa16.45■□□□□ 0.22
HMGB3-205ENST00000455596 LGALS1P09382 135 aaKnown RBP16.45■□□□□ 0.22
HMGB3-205ENST00000455596 TPPP2P59282 170 aa16.45■□□□□ 0.22
HMGB3-205ENST00000455596 MS4A10Q96PG2 267 aa16.45■□□□□ 0.22
HMGB3-205ENST00000455596 ALX4Q9H161 411 aaPredicted RBP16.45■□□□□ 0.22
HMGB3-205ENST00000455596 DIABLOQ9NR28 239 aa16.45■□□□□ 0.22
HMGB3-205ENST00000455596 SRRM4A7MD48 611 aaKnown RBP16.44■□□□□ 0.22
HMGB3-205ENST00000455596 AIREO43918 545 aa16.44■□□□□ 0.22
HMGB3-205ENST00000455596 CRYZL1O95825 349 aa16.44■□□□□ 0.22
HMGB3-205ENST00000455596 SSBP2P81877 361 aaPredicted RBP16.44■□□□□ 0.22
HMGB3-205ENST00000455596 PJVKQ0ZLH3 352 aa16.44■□□□□ 0.22
HMGB3-205ENST00000455596 VMA21Q3ZAQ7 101 aa16.44■□□□□ 0.22
HMGB3-205ENST00000455596 CROCCP3Q8IVE0 287 aa16.44■□□□□ 0.22
HMGB3-205ENST00000455596 OSR1Q8TAX0 266 aaPredicted RBP16.44■□□□□ 0.22
HMGB3-205ENST00000455596 YIPF6Q96EC8 236 aa16.44■□□□□ 0.22
HMGB3-205ENST00000455596 LINC01619G3V211 115 aa16.43■□□□□ 0.22
HMGB3-205ENST00000455596 TRGV3P03979 118 aa16.43■□□□□ 0.22
HMGB3-205ENST00000455596 TGFBR1P36897 503 aa16.43■□□□□ 0.22
HMGB3-205ENST00000455596 ARPC4P59998 168 aa16.43■□□□□ 0.22
HMGB3-205ENST00000455596 DCTN2Q13561 401 aaKnown RBP16.43■□□□□ 0.22
HMGB3-205ENST00000455596 TEX45Q8NA69 505 aa16.43■□□□□ 0.22
HMGB3-205ENST00000455596 BEST4Q8NFU0 473 aa16.43■□□□□ 0.22
HMGB3-205ENST00000455596 TMEM68Q96MH6 324 aa16.43■□□□□ 0.22
HMGB3-205ENST00000455596 ZNF355PQ9NSJ1 428 aa16.43■□□□□ 0.22
HMGB3-205ENST00000455596 RBMX2Q9Y388 322 aaKnown RBP16.43■□□□□ 0.22
HMGB3-205ENST00000455596 H3BUA1 57 aa16.42■□□□□ 0.22
HMGB3-205ENST00000455596 IGHV3-11P01762 117 aa16.42■□□□□ 0.22
HMGB3-205ENST00000455596 UBE2KP61086 200 aa16.42■□□□□ 0.22
HMGB3-205ENST00000455596 KCTD9Q7L273 389 aa16.42■□□□□ 0.22
HMGB3-205ENST00000455596 DCUN1D4Q92564 292 aa16.42■□□□□ 0.22
HMGB3-205ENST00000455596 SCOCQ9UIL1 159 aa16.42■□□□□ 0.22
HMGB3-205ENST00000455596 PRELID3BQ9Y3B1 194 aa16.42■□□□□ 0.22
HMGB3-205ENST00000455596 IGKV1D-13A0A0B4J2D9 117 aa16.41■□□□□ 0.22
HMGB3-205ENST00000455596 OVOL1O14753 267 aa16.41■□□□□ 0.22
HMGB3-205ENST00000455596 FCGR3BO75015 233 aa16.41■□□□□ 0.22
HMGB3-205ENST00000455596 TUSC2O75896 110 aa16.41■□□□□ 0.22
HMGB3-205ENST00000455596 IGKV1-13P0DP09 117 aa16.41■□□□□ 0.22
HMGB3-205ENST00000455596 ECI1P42126 302 aa16.41■□□□□ 0.22
HMGB3-205ENST00000455596 INSL3P51460 131 aa16.41■□□□□ 0.22
HMGB3-205ENST00000455596 SLURP1P55000 103 aa16.41■□□□□ 0.22
HMGB3-205ENST00000455596 LSM3P62310 102 aaKnown RBP16.41■□□□□ 0.22
HMGB3-205ENST00000455596 HOGA1Q86XE5 327 aa16.41■□□□□ 0.22
HMGB3-205ENST00000455596 GVQW1Q8N7I0 195 aa16.41■□□□□ 0.22
HMGB3-205ENST00000455596 POC5Q8NA72 575 aa16.41■□□□□ 0.22
HMGB3-205ENST00000455596 OR5T1Q8NG75 326 aa16.41■□□□□ 0.22
HMGB3-205ENST00000455596 RHOVQ96L33 236 aa16.41■□□□□ 0.22
HMGB3-205ENST00000455596 PHB2Q99623 299 aa16.41■□□□□ 0.22
HMGB3-205ENST00000455596 DCUN1D5Q9BTE7 237 aa16.41■□□□□ 0.22
HMGB3-205ENST00000455596 AUNIPQ9H7T9 357 aa16.41■□□□□ 0.22
HMGB3-205ENST00000455596 MRPS7Q9Y2R9 242 aaKnown RBP16.41■□□□□ 0.22
HMGB3-205ENST00000455596 DNAH3Q8TD57 4116 aa16.4■□□□□ 0.22
HMGB3-205ENST00000455596 IGHV4OR15-8A0A075B7B6 117 aa16.4■□□□□ 0.22
HMGB3-205ENST00000455596 A0A087WW49 117 aa16.4■□□□□ 0.22
HMGB3-205ENST00000455596 IGLV2-14P01704 120 aa16.4■□□□□ 0.22
HMGB3-205ENST00000455596 HSPB1P04792 205 aaKnown RBP16.4■□□□□ 0.22
HMGB3-205ENST00000455596 RPS19P39019 145 aaKnown RBP16.4■□□□□ 0.22
HMGB3-205ENST00000455596 TNXAQ16473 311 aa16.4■□□□□ 0.22
HMGB3-205ENST00000455596 MRGPRG-AS1Q2M3A8 158 aa16.4■□□□□ 0.22
HMGB3-205ENST00000455596 IDO2Q6ZQW0 420 aa16.4■□□□□ 0.22
HMGB3-205ENST00000455596 OVCH2Q7RTZ1 564 aa16.4■□□□□ 0.22
HMGB3-205ENST00000455596 DLX4Q92988 240 aaPredicted RBP16.4■□□□□ 0.22
HMGB3-205ENST00000455596 HSD17B10Q99714 261 aaKnown RBP16.4■□□□□ 0.22
HMGB3-205ENST00000455596 CREBL2O60519 120 aaPredicted RBP16.39■□□□□ 0.21
HMGB3-205ENST00000455596 CBX5P45973 191 aa16.39■□□□□ 0.21
HMGB3-205ENST00000455596 RPL30P62888 115 aaKnown RBP16.39■□□□□ 0.21
HMGB3-205ENST00000455596 PRSS8Q16651 343 aa16.39■□□□□ 0.21
HMGB3-205ENST00000455596 OR2B11Q5JQS5 317 aa16.39■□□□□ 0.21
HMGB3-205ENST00000455596 S100A16Q96FQ6 103 aaKnown RBP16.39■□□□□ 0.21
HMGB3-205ENST00000455596 TNCP24821 2201 aa16.39■□□□□ 0.21
HMGB3-205ENST00000455596 C13orf42A0A1B0GVH6 325 aa16.38■□□□□ 0.21
HMGB3-205ENST00000455596 XRCC3O43542 346 aa16.38■□□□□ 0.21
HMGB3-205ENST00000455596 SAA1P0DJI8 122 aaPredicted RBP16.38■□□□□ 0.21
HMGB3-205ENST00000455596 PTHLHP12272 177 aa16.38■□□□□ 0.21
HMGB3-205ENST00000455596 CDK10Q15131 360 aa16.38■□□□□ 0.21
HMGB3-205ENST00000455596 UBE2NLQ5JXB2 153 aa16.38■□□□□ 0.21
HMGB3-205ENST00000455596 ZNF429Q86V71 674 aa16.38■□□□□ 0.21
HMGB3-205ENST00000455596 TCTEX1D2Q8WW35 142 aa16.38■□□□□ 0.21
HMGB3-205ENST00000455596 ACOT12Q8WYK0 555 aa16.38■□□□□ 0.21
HMGB3-205ENST00000455596 PRR25Q96S07 402 aa16.38■□□□□ 0.21
HMGB3-205ENST00000455596 A0A0G2JLM5 398 aa16.37■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 89.6 ms