RNA–Protein interactions for RNA: ENST00000454018.6

SYNE1-214, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 1,546 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-214ENST00000454018 M0R1X1 148 aa7.04□□□□□ -1.28
SYNE1-214ENST00000454018 TIMM23O14925 209 aa7.04□□□□□ -1.28
SYNE1-214ENST00000454018 HOXA3O43365 443 aaPredicted RBP7.04□□□□□ -1.28
SYNE1-214ENST00000454018 WIPF1O43516 503 aa7.04□□□□□ -1.28
SYNE1-214ENST00000454018 TCF21O43680 179 aa7.04□□□□□ -1.28
SYNE1-214ENST00000454018 BAMBIQ13145 260 aa7.04□□□□□ -1.28
SYNE1-214ENST00000454018 SCGB2B2Q4G0G5 96 aa7.04□□□□□ -1.28
SYNE1-214ENST00000454018 AADACL3Q5VUY0 350 aa7.04□□□□□ -1.28
SYNE1-214ENST00000454018 LPCAT3Q6P1A2 487 aa7.04□□□□□ -1.28
SYNE1-214ENST00000454018 SLC38A6Q8IZM9 456 aa7.04□□□□□ -1.28
SYNE1-214ENST00000454018 DRAM1Q8N682 238 aa7.04□□□□□ -1.28
SYNE1-214ENST00000454018 ADTRPQ96IZ2 230 aa7.04□□□□□ -1.28
SYNE1-214ENST00000454018 AKR1E2Q96JD6 320 aa7.04□□□□□ -1.28
SYNE1-214ENST00000454018 C7orf50Q9BRJ6 194 aaKnown RBP7.04□□□□□ -1.28
SYNE1-214ENST00000454018 MCUBQ9NWR8 336 aa7.04□□□□□ -1.28
SYNE1-214ENST00000454018 PITPNC1Q9UKF7 332 aa7.04□□□□□ -1.28
SYNE1-214ENST00000454018 VPREB3Q9UKI3 123 aa7.04□□□□□ -1.28
SYNE1-214ENST00000454018 RNF150Q9ULK6 438 aa7.04□□□□□ -1.28
SYNE1-214ENST00000454018 TCF19Q9Y242 345 aa7.04□□□□□ -1.28
SYNE1-214ENST00000454018 PLXNB1O43157 2135 aa7.04□□□□□ -1.28
SYNE1-214ENST00000454018 NF1P21359 2839 aa7.04□□□□□ -1.28
SYNE1-214ENST00000454018 ZFHX3Q15911 3703 aa7.04□□□□□ -1.28
SYNE1-214ENST00000454018 CENPXA8MT69 81 aa7.03□□□□□ -1.28
SYNE1-214ENST00000454018 J3QRK9 145 aa7.03□□□□□ -1.28
SYNE1-214ENST00000454018 UPK1BO75841 260 aa7.03□□□□□ -1.28
SYNE1-214ENST00000454018 IGLV2-14P01704 120 aa7.03□□□□□ -1.28
SYNE1-214ENST00000454018 IGHV4-59P01825 116 aa7.03□□□□□ -1.28
SYNE1-214ENST00000454018 APOA2P02652 100 aa7.03□□□□□ -1.28
SYNE1-214ENST00000454018 ZNF735P0CB33 412 aa7.03□□□□□ -1.28
SYNE1-214ENST00000454018 PAX6P26367 422 aa7.03□□□□□ -1.28
SYNE1-214ENST00000454018 CD1BP29016 333 aa7.03□□□□□ -1.28
SYNE1-214ENST00000454018 S100GP29377 79 aa7.03□□□□□ -1.28
SYNE1-214ENST00000454018 THBS3P49746 956 aa7.03□□□□□ -1.28
SYNE1-214ENST00000454018 RAB13P51153 203 aa7.03□□□□□ -1.28
SYNE1-214ENST00000454018 CATR1Q13166 79 aa7.03□□□□□ -1.28
SYNE1-214ENST00000454018 SURF2Q15527 256 aaPredicted RBP7.03□□□□□ -1.28
SYNE1-214ENST00000454018 IDO2Q6ZQW0 420 aa7.03□□□□□ -1.28
SYNE1-214ENST00000454018 ZNF818PQ6ZRF7 136 aa7.03□□□□□ -1.28
SYNE1-214ENST00000454018 KCTD9Q7L273 389 aa7.03□□□□□ -1.28
SYNE1-214ENST00000454018 MOB3BQ86TA1 216 aa7.03□□□□□ -1.28
SYNE1-214ENST00000454018 CMTM1Q8IZ96 169 aa7.03□□□□□ -1.28
SYNE1-214ENST00000454018 OR51S1Q8NGJ8 323 aa7.03□□□□□ -1.28
SYNE1-214ENST00000454018 TERB2Q8NHR7 220 aa7.03□□□□□ -1.28
SYNE1-214ENST00000454018 C5orf30Q96GV9 206 aa7.03□□□□□ -1.28
SYNE1-214ENST00000454018 ZNF486Q96H40 463 aaPredicted RBP7.03□□□□□ -1.28
SYNE1-214ENST00000454018 TSC22D3Q99576 134 aa7.03□□□□□ -1.28
SYNE1-214ENST00000454018 HSD17B10Q99714 261 aaKnown RBP7.03□□□□□ -1.28
SYNE1-214ENST00000454018 NABP2Q9BQ15 211 aa7.03□□□□□ -1.28
SYNE1-214ENST00000454018 HRASLSQ9HDD0 168 aa7.03□□□□□ -1.28
SYNE1-214ENST00000454018 CCL28Q9NRJ3 127 aa7.03□□□□□ -1.28
SYNE1-214ENST00000454018 FAM90A9PA6NNJ1 464 aa7.02□□□□□ -1.29
SYNE1-214ENST00000454018 RNF212BA8MTL3 300 aa7.02□□□□□ -1.29
SYNE1-214ENST00000454018 H0YJW9 148 aa7.02□□□□□ -1.29
SYNE1-214ENST00000454018 GPR31O00270 319 aa7.02□□□□□ -1.29
SYNE1-214ENST00000454018 PROP1O75360 226 aa7.02□□□□□ -1.29
SYNE1-214ENST00000454018 VENTXO95231 258 aa7.02□□□□□ -1.29
SYNE1-214ENST00000454018 SNRNP70P08621 437 aaKnown RBP7.02□□□□□ -1.29
SYNE1-214ENST00000454018 FAM106CPP0CH98 169 aa7.02□□□□□ -1.29
SYNE1-214ENST00000454018 CT45A6P0DMU7 189 aa7.02□□□□□ -1.29
SYNE1-214ENST00000454018 CT45A5P0DMU8 189 aa7.02□□□□□ -1.29
SYNE1-214ENST00000454018 CT45A7P0DMV0 189 aa7.02□□□□□ -1.29
SYNE1-214ENST00000454018 MC5RP33032 325 aa7.02□□□□□ -1.29
SYNE1-214ENST00000454018 DUTP33316 252 aaKnown RBP7.02□□□□□ -1.29
SYNE1-214ENST00000454018 RPL15P61313 204 aaKnown RBP7.02□□□□□ -1.29
SYNE1-214ENST00000454018 CBX3Q13185 183 aa7.02□□□□□ -1.29
SYNE1-214ENST00000454018 ZNF66Q6ZN08 573 aa7.02□□□□□ -1.29
SYNE1-214ENST00000454018 C16orf82Q7Z2V1 217 aa7.02□□□□□ -1.29
SYNE1-214ENST00000454018 RAB18Q9NP72 206 aa7.02□□□□□ -1.29
SYNE1-214ENST00000454018 ESM1Q9NQ30 184 aa7.02□□□□□ -1.29
SYNE1-214ENST00000454018 WASHC3Q9Y3C0 194 aa7.02□□□□□ -1.29
SYNE1-214ENST00000454018 ATRQ13535 2644 aa7.02□□□□□ -1.29
SYNE1-214ENST00000454018 CUBNO60494 3623 aa7.02□□□□□ -1.29
SYNE1-214ENST00000454018 IGHV3-72A0A0B4J1Y9 119 aa7.01□□□□□ -1.29
SYNE1-214ENST00000454018 MOSP00540 346 aa7.01□□□□□ -1.29
SYNE1-214ENST00000454018 IGKV1D-33P01593 117 aa7.01□□□□□ -1.29
SYNE1-214ENST00000454018 IGKV1-33P01594 117 aa7.01□□□□□ -1.29
SYNE1-214ENST00000454018 RNASE1P07998 156 aaKnown RBP7.01□□□□□ -1.29
SYNE1-214ENST00000454018 RRASP10301 218 aa7.01□□□□□ -1.29
SYNE1-214ENST00000454018 PGAM2P15259 253 aa7.01□□□□□ -1.29
SYNE1-214ENST00000454018 GNRHRP30968 328 aa7.01□□□□□ -1.29
SYNE1-214ENST00000454018 KIR2DS2P43631 304 aa7.01□□□□□ -1.29
SYNE1-214ENST00000454018 UBA52P62987 128 aaKnown RBP7.01□□□□□ -1.29
SYNE1-214ENST00000454018 EIF4EBP1Q13541 118 aaPredicted RBP7.01□□□□□ -1.29
SYNE1-214ENST00000454018 EBI3Q14213 229 aa7.01□□□□□ -1.29
SYNE1-214ENST00000454018 HES1Q14469 280 aa7.01□□□□□ -1.29
SYNE1-214ENST00000454018 RBMS2Q15434 407 aaKnown RBP7.01□□□□□ -1.29
SYNE1-214ENST00000454018 SLC9A3R2Q15599 337 aa7.01□□□□□ -1.29
SYNE1-214ENST00000454018 RTL8BQ17RB0 113 aa7.01□□□□□ -1.29
SYNE1-214ENST00000454018 ABCA11PQ4W5N1 156 aa7.01□□□□□ -1.29
SYNE1-214ENST00000454018 DHRS7BQ6IAN0 325 aaPredicted RBP7.01□□□□□ -1.29
SYNE1-214ENST00000454018 GLDNQ6ZMI3 551 aaPredicted RBP7.01□□□□□ -1.29
SYNE1-214ENST00000454018 PDPNQ86YL7 162 aa7.01□□□□□ -1.29
SYNE1-214ENST00000454018 ZDHHC22Q8N966 263 aa7.01□□□□□ -1.29
SYNE1-214ENST00000454018 ZNF383Q8NA42 475 aa7.01□□□□□ -1.29
SYNE1-214ENST00000454018 DRAXINQ8NBI3 349 aaPredicted RBP7.01□□□□□ -1.29
SYNE1-214ENST00000454018 OR13C8Q8NGS7 320 aa7.01□□□□□ -1.29
SYNE1-214ENST00000454018 OR2T10Q8NGZ9 312 aa7.01□□□□□ -1.29
SYNE1-214ENST00000454018 ZFAND1Q8TCF1 268 aa7.01□□□□□ -1.29
SYNE1-214ENST00000454018 PIFOQ8TCI5 191 aa7.01□□□□□ -1.29
SYNE1-214ENST00000454018 CAPSLQ8WWF8 208 aa7.01□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 48.6 ms