RNA–Protein interactions for RNA: ENST00000424265.5

USP54-205, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 5,201 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-205ENST00000424265 ATXN7O15265 892 aaPredicted RBP8.38□□□□□ -1.07
USP54-205ENST00000424265 ZNF708P17019 499 aa8.38□□□□□ -1.07
USP54-205ENST00000424265 CCDC71LQ8N9Z2 235 aa8.38□□□□□ -1.07
USP54-205ENST00000424265 MDS2Q8NDY4 140 aa8.38□□□□□ -1.07
USP54-205ENST00000424265 CLDND2Q8NHS1 167 aa8.38□□□□□ -1.07
USP54-205ENST00000424265 SLC39A9Q9NUM3 307 aa8.38□□□□□ -1.07
USP54-205ENST00000424265 DOCK9Q9BZ29 2069 aa8.38□□□□□ -1.07
USP54-205ENST00000424265 NRN1LQ496H8 165 aa8.37□□□□□ -1.07
USP54-205ENST00000424265 PIGBOS1A0A0B4J2F0 54 aa8.37□□□□□ -1.07
USP54-205ENST00000424265 H0Y980 276 aa8.37□□□□□ -1.07
USP54-205ENST00000424265 SLC17A2O00624 439 aa8.37□□□□□ -1.07
USP54-205ENST00000424265 CD5LO43866 347 aa8.37□□□□□ -1.07
USP54-205ENST00000424265 MGST1P10620 155 aaKnown RBP8.37□□□□□ -1.07
USP54-205ENST00000424265 ZNF718Q3SXZ3 478 aa8.37□□□□□ -1.07
USP54-205ENST00000424265 P2RX4Q99571 388 aa8.37□□□□□ -1.07
USP54-205ENST00000424265 ST6GALNAC5Q9BVH7 336 aa8.37□□□□□ -1.07
USP54-205ENST00000424265 IGKV1D-42A0A075B6H8 117 aa8.37□□□□□ -1.07
USP54-205ENST00000424265 DKK1O94907 266 aa8.37□□□□□ -1.07
USP54-205ENST00000424265 GYPAP02724 150 aa8.37□□□□□ -1.07
USP54-205ENST00000424265 LYL1P12980 280 aa8.37□□□□□ -1.07
USP54-205ENST00000424265 B4GALT1P15291 398 aa8.37□□□□□ -1.07
USP54-205ENST00000424265 ADIPOQQ15848 244 aa8.37□□□□□ -1.07
USP54-205ENST00000424265 C1QL3Q5VWW1 255 aa8.37□□□□□ -1.07
USP54-205ENST00000424265 OR51A4Q8NGJ6 313 aa8.37□□□□□ -1.07
USP54-205ENST00000424265 MRPL27Q9P0M9 148 aaKnown RBP8.37□□□□□ -1.07
USP54-205ENST00000424265 C17orf112F2Z3M2 114 aa8.37□□□□□ -1.07
USP54-205ENST00000424265 TIMM8AO60220 97 aaPredicted RBP8.37□□□□□ -1.07
USP54-205ENST00000424265 ZIC3O60481 467 aa8.37□□□□□ -1.07
USP54-205ENST00000424265 ALOX5APP20292 161 aa8.37□□□□□ -1.07
USP54-205ENST00000424265 TAS2R46P59540 309 aa8.37□□□□□ -1.07
USP54-205ENST00000424265 PRDX4Q13162 271 aa8.37□□□□□ -1.07
USP54-205ENST00000424265 C19orf35Q6ZS72 473 aa8.37□□□□□ -1.07
USP54-205ENST00000424265 MKXQ8IYA7 352 aa8.37□□□□□ -1.07
USP54-205ENST00000424265 OR10G4Q8NGN3 311 aa8.37□□□□□ -1.07
USP54-205ENST00000424265 OR10AG1Q8NH19 301 aa8.37□□□□□ -1.07
USP54-205ENST00000424265 EAF1Q96JC9 268 aaPredicted RBP8.37□□□□□ -1.07
USP54-205ENST00000424265 SPRY4Q9C004 299 aa8.37□□□□□ -1.07
USP54-205ENST00000424265 MDC1Q14676 2089 aaKnown RBP8.37□□□□□ -1.07
USP54-205ENST00000424265 B5MCH6 92 aa8.36□□□□□ -1.07
USP54-205ENST00000424265 H3BUT2 72 aa8.36□□□□□ -1.07
USP54-205ENST00000424265 KLF4O43474 513 aa8.36□□□□□ -1.07
USP54-205ENST00000424265 HIST1H1EP10412 219 aaKnown RBP8.36□□□□□ -1.07
USP54-205ENST00000424265 ZNF93P35789 620 aaPredicted RBP8.36□□□□□ -1.07
USP54-205ENST00000424265 GPR12P47775 334 aa8.36□□□□□ -1.07
USP54-205ENST00000424265 SRSF6Q13247 344 aaKnown RBP8.36□□□□□ -1.07
USP54-205ENST00000424265 IL13RA2Q14627 380 aa8.36□□□□□ -1.07
USP54-205ENST00000424265 OR2K2Q8NGT1 345 aa8.36□□□□□ -1.07
USP54-205ENST00000424265 RNF128Q8TEB7 428 aa8.36□□□□□ -1.07
USP54-205ENST00000424265 C10orf35Q96D05 121 aa8.36□□□□□ -1.07
USP54-205ENST00000424265 CEP192Q8TEP8 1941 aa8.36□□□□□ -1.07
USP54-205ENST00000424265 MUC21A0A0G2JKD1 596 aa8.36□□□□□ -1.07
USP54-205ENST00000424265 MUC21A0A140T8X8 626 aa8.36□□□□□ -1.07
USP54-205ENST00000424265 CD1AP06126 327 aa8.36□□□□□ -1.07
USP54-205ENST00000424265 ADMP35318 185 aa8.36□□□□□ -1.07
USP54-205ENST00000424265 MUC21Q5SSG8 566 aa8.36□□□□□ -1.07
USP54-205ENST00000424265 C20orf196Q8IYI0 205 aa8.36□□□□□ -1.07
USP54-205ENST00000424265 SLC22A24Q8N4F4 322 aa8.36□□□□□ -1.07
USP54-205ENST00000424265 FAM57AQ8TBR7 257 aa8.36□□□□□ -1.07
USP54-205ENST00000424265 EMG1Q92979 244 aaKnown RBP8.36□□□□□ -1.07
USP54-205ENST00000424265 NRN1Q9NPD7 142 aa8.36□□□□□ -1.07
USP54-205ENST00000424265 FAM186AA6NE01 2351 aa8.36□□□□□ -1.07
USP54-205ENST00000424265 TRAV9-2A0A087WT02 112 aa8.36□□□□□ -1.07
USP54-205ENST00000424265 ZNF816-ZNF321PA0A0X1KG74 233 aa8.36□□□□□ -1.07
USP54-205ENST00000424265 K7N7A8 449 aa8.36□□□□□ -1.07
USP54-205ENST00000424265 PIN1P1O15428 100 aa8.36□□□□□ -1.07
USP54-205ENST00000424265 MPPED1O15442 326 aa8.36□□□□□ -1.07
USP54-205ENST00000424265 HSBP1O75506 76 aa8.36□□□□□ -1.07
USP54-205ENST00000424265 RAD51DO75771 328 aa8.36□□□□□ -1.07
USP54-205ENST00000424265 SPTBP11277 2137 aa8.36□□□□□ -1.07
USP54-205ENST00000424265 Q6ZS92 163 aa8.36□□□□□ -1.07
USP54-205ENST00000424265 TCF24Q7RTU0 167 aa8.36□□□□□ -1.07
USP54-205ENST00000424265 BPIFA4PQ86YQ2 179 aa8.36□□□□□ -1.07
USP54-205ENST00000424265 GVQW1Q8N7I0 195 aa8.36□□□□□ -1.07
USP54-205ENST00000424265 TIMP4Q99727 224 aa8.36□□□□□ -1.07
USP54-205ENST00000424265 RTL8AQ9BWD3 113 aa8.36□□□□□ -1.07
USP54-205ENST00000424265 CYSLTR1Q9Y271 337 aa8.36□□□□□ -1.07
USP54-205ENST00000424265 ZNF737O75373 536 aa8.36□□□□□ -1.07
USP54-205ENST00000424265 IGHV3-9P01782 118 aa8.36□□□□□ -1.07
USP54-205ENST00000424265 PLA2G5P39877 138 aa8.36□□□□□ -1.07
USP54-205ENST00000424265 ROM1Q03395 351 aa8.36□□□□□ -1.07
USP54-205ENST00000424265 OR10X1Q8NGY0 326 aa8.36□□□□□ -1.07
USP54-205ENST00000424265 PP6455Q8WZ26 134 aa8.36□□□□□ -1.07
USP54-205ENST00000424265 WDR61Q9GZS3 305 aaKnown RBP8.36□□□□□ -1.07
USP54-205ENST00000424265 SELENOKQ9Y6D0 94 aa8.36□□□□□ -1.07
USP54-205ENST00000424265 CTLA4P16410 223 aa8.36□□□□□ -1.07
USP54-205ENST00000424265 HERV-K104P61576 105 aa8.36□□□□□ -1.07
USP54-205ENST00000424265 RELBQ01201 579 aa8.36□□□□□ -1.07
USP54-205ENST00000424265 Q0VFX4 171 aa8.36□□□□□ -1.07
USP54-205ENST00000424265 FAM27BQ5VT28 67 aa8.36□□□□□ -1.07
USP54-205ENST00000424265 ST6GALNAC6Q969X2 333 aa8.36□□□□□ -1.07
USP54-205ENST00000424265 RAB1BQ9H0U4 201 aa8.36□□□□□ -1.07
USP54-205ENST00000424265 RFNGQ9Y644 331 aa8.36□□□□□ -1.07
USP54-205ENST00000424265 GNB3P16520 340 aa8.35□□□□□ -1.07
USP54-205ENST00000424265 DOLPP1Q86YN1 238 aa8.35□□□□□ -1.07
USP54-205ENST00000424265 RNF133Q8WVZ7 376 aa8.35□□□□□ -1.07
USP54-205ENST00000424265 SPIN2AQ99865 258 aa8.35□□□□□ -1.07
USP54-205ENST00000424265 SPIN2BQ9BPZ2 258 aa8.35□□□□□ -1.07
USP54-205ENST00000424265 MRPL18Q9H0U6 180 aaKnown RBP8.35□□□□□ -1.07
USP54-205ENST00000424265 SRCAPQ6ZRS2 3230 aa8.35□□□□□ -1.07
USP54-205ENST00000424265 A0A1B0GUS0 222 aa8.35□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms