RNA–Protein interactions for RNA: ENST00000419472.1

VPS13A-207, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 1 (best)

Gene VPS13A, Length 2,781 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-207ENST00000419472 ARRDC5A6NEK1 342 aa4□□□□□ -1.77
VPS13A-207ENST00000419472 TMEM235A6NFC5 223 aa4□□□□□ -1.77
VPS13A-207ENST00000419472 DHRS7CA6NNS2 312 aa4□□□□□ -1.77
VPS13A-207ENST00000419472 F6UZH7 168 aa4□□□□□ -1.77
VPS13A-207ENST00000419472 M0R036 132 aa4□□□□□ -1.77
VPS13A-207ENST00000419472 CDC40O60508 579 aaKnown RBP eCLIP4□□□□□ -1.77
VPS13A-207ENST00000419472 REM1O75628 298 aa4□□□□□ -1.77
VPS13A-207ENST00000419472 TRGC1P0CF51 173 aa4□□□□□ -1.77
VPS13A-207ENST00000419472 CXCL12P48061 93 aa4□□□□□ -1.77
VPS13A-207ENST00000419472 LINC00205P59089 165 aa4□□□□□ -1.77
VPS13A-207ENST00000419472 ERVS71-1P61550 626 aa4□□□□□ -1.77
VPS13A-207ENST00000419472 RPL31P62899 125 aaKnown RBP4□□□□□ -1.77
VPS13A-207ENST00000419472 HMGCS1Q01581 520 aa4□□□□□ -1.77
VPS13A-207ENST00000419472 LINC00303Q3SY05 128 aa4□□□□□ -1.77
VPS13A-207ENST00000419472 SBSNQ6UWP8 590 aa4□□□□□ -1.77
VPS13A-207ENST00000419472 ZNF705AQ6ZN79 300 aaPredicted RBP4□□□□□ -1.77
VPS13A-207ENST00000419472 TCF24Q7RTU0 167 aa4□□□□□ -1.77
VPS13A-207ENST00000419472 NRMQ8IXM6 262 aa4□□□□□ -1.77
VPS13A-207ENST00000419472 CASTOR1Q8WTX7 329 aa4□□□□□ -1.77
VPS13A-207ENST00000419472 CHCHD10Q8WYQ3 142 aaPredicted RBP4□□□□□ -1.77
VPS13A-207ENST00000419472 KLK6Q92876 244 aa4□□□□□ -1.77
VPS13A-207ENST00000419472 OR52E6Q96RD3 313 aa4□□□□□ -1.77
VPS13A-207ENST00000419472 MIEN1Q9BRT3 115 aa4□□□□□ -1.77
VPS13A-207ENST00000419472 ATG5Q9H1Y0 275 aa4□□□□□ -1.77
VPS13A-207ENST00000419472 ARV1Q9H2C2 271 aa4□□□□□ -1.77
VPS13A-207ENST00000419472 PSG11Q9UQ72 335 aa4□□□□□ -1.77
VPS13A-207ENST00000419472 DSPPQ9NZW4 1301 aa4□□□□□ -1.77
VPS13A-207ENST00000419472 YLPM1P49750 1951 aaKnown RBP4□□□□□ -1.77
VPS13A-207ENST00000419472 A0A0G2JLM5 398 aa3.99□□□□□ -1.77
VPS13A-207ENST00000419472 IRGMA1A4Y4 181 aa3.99□□□□□ -1.77
VPS13A-207ENST00000419472 OR5H14A6NHG9 310 aa3.99□□□□□ -1.77
VPS13A-207ENST00000419472 NCBP2LA6PVI3 153 aaKnown RBP3.99□□□□□ -1.77
VPS13A-207ENST00000419472 ERI3O43414 337 aaKnown RBP3.99□□□□□ -1.77
VPS13A-207ENST00000419472 MMP23AO75900 390 aa3.99□□□□□ -1.77
VPS13A-207ENST00000419472 PET100P0DJ07 73 aa3.99□□□□□ -1.77
VPS13A-207ENST00000419472 PGA3P0DJD8 388 aa3.99□□□□□ -1.77
VPS13A-207ENST00000419472 IGHV1-2P23083 117 aa3.99□□□□□ -1.77
VPS13A-207ENST00000419472 SPINT3P49223 89 aa3.99□□□□□ -1.77
VPS13A-207ENST00000419472 HMGA2P52926 109 aa3.99□□□□□ -1.77
VPS13A-207ENST00000419472 KRTAP15-1Q3LI76 137 aa3.99□□□□□ -1.77
VPS13A-207ENST00000419472 CCSMST1Q4G0I0 132 aa3.99□□□□□ -1.77
VPS13A-207ENST00000419472 SFXN4Q6P4A7 337 aa3.99□□□□□ -1.77
VPS13A-207ENST00000419472 TNFAIP8L2Q6P589 184 aaPredicted RBP3.99□□□□□ -1.77
VPS13A-207ENST00000419472 OR5P2Q8WZ92 322 aa3.99□□□□□ -1.77
VPS13A-207ENST00000419472 ZNF488Q96MN9 340 aa3.99□□□□□ -1.77
VPS13A-207ENST00000419472 SRXN1Q9BYN0 137 aa3.99□□□□□ -1.77
VPS13A-207ENST00000419472 C6orf106Q9H6K1 298 aaPredicted RBP3.99□□□□□ -1.77
VPS13A-207ENST00000419472 DNAJC27Q9NZQ0 273 aa3.99□□□□□ -1.77
VPS13A-207ENST00000419472 PCTPQ9UKL6 214 aa3.99□□□□□ -1.77
VPS13A-207ENST00000419472 RBM7Q9Y580 266 aaKnown RBP3.99□□□□□ -1.77
VPS13A-207ENST00000419472 CNOT1A5YKK6 2376 aaKnown RBP3.99□□□□□ -1.77
VPS13A-207ENST00000419472 A0A087WWC5 75 aa3.99□□□□□ -1.77
VPS13A-207ENST00000419472 A0A0A6YYD5 115 aa3.99□□□□□ -1.77
VPS13A-207ENST00000419472 CXorf51AA0A1B0GTR3 108 aa3.99□□□□□ -1.77
VPS13A-207ENST00000419472 PMS2P5A8MQ11 134 aa3.99□□□□□ -1.77
VPS13A-207ENST00000419472 BHLHE40O14503 412 aa3.99□□□□□ -1.77
VPS13A-207ENST00000419472 TRGC2P03986 189 aa3.99□□□□□ -1.77
VPS13A-207ENST00000419472 CXCL1P09341 107 aa3.99□□□□□ -1.77
VPS13A-207ENST00000419472 SCGB1A1P11684 91 aa3.99□□□□□ -1.77
VPS13A-207ENST00000419472 CDKN2AP42771 156 aaKnown RBP3.99□□□□□ -1.77
VPS13A-207ENST00000419472 ELOBQ15370 118 aa3.99□□□□□ -1.77
VPS13A-207ENST00000419472 PGGHGQ32M88 737 aa3.99□□□□□ -1.77
VPS13A-207ENST00000419472 COA6Q5JTJ3 125 aaKnown RBP3.99□□□□□ -1.77
VPS13A-207ENST00000419472 FBXW12Q6X9E4 464 aa3.99□□□□□ -1.77
VPS13A-207ENST00000419472 C6orf223Q8N319 242 aa3.99□□□□□ -1.77
VPS13A-207ENST00000419472 OR6K6Q8NGW6 343 aa3.99□□□□□ -1.77
VPS13A-207ENST00000419472 FRZBQ92765 325 aa3.99□□□□□ -1.77
VPS13A-207ENST00000419472 RPUSD4Q96CM3 377 aaKnown RBP3.99□□□□□ -1.77
VPS13A-207ENST00000419472 C20orf144Q9BQM9 153 aa3.99□□□□□ -1.77
VPS13A-207ENST00000419472 CST9LQ9H4G1 147 aa3.99□□□□□ -1.77
VPS13A-207ENST00000419472 CLMPQ9H6B4 373 aa3.99□□□□□ -1.77
VPS13A-207ENST00000419472 KCNIP1Q9NZI2 227 aa3.99□□□□□ -1.77
VPS13A-207ENST00000419472 DEC1Q9P2X7 70 aa3.99□□□□□ -1.77
VPS13A-207ENST00000419472 VAX2Q9UIW0 290 aa3.99□□□□□ -1.77
VPS13A-207ENST00000419472 MUC22E2RYF6 1773 aaPredicted RBP3.99□□□□□ -1.77
VPS13A-207ENST00000419472 RALGAPA1Q6GYQ0 2036 aa3.99□□□□□ -1.77
VPS13A-207ENST00000419472 IGHV1OR21-1A0A087WYE8 117 aa3.98□□□□□ -1.77
VPS13A-207ENST00000419472 IGKV1D-13A0A0B4J2D9 117 aa3.98□□□□□ -1.77
VPS13A-207ENST00000419472 A0A1B0GTI1 187 aa3.98□□□□□ -1.77
VPS13A-207ENST00000419472 A0A1B0GV72 72 aa3.98□□□□□ -1.77
VPS13A-207ENST00000419472 GABARAPH6UMI1 98 aa3.98□□□□□ -1.77
VPS13A-207ENST00000419472 CDX4O14627 284 aaPredicted RBP3.98□□□□□ -1.77
VPS13A-207ENST00000419472 FGF17O60258 216 aa3.98□□□□□ -1.77
VPS13A-207ENST00000419472 TACSTD2P09758 323 aa3.98□□□□□ -1.77
VPS13A-207ENST00000419472 IGKV1-13P0DP09 117 aa3.98□□□□□ -1.77
VPS13A-207ENST00000419472 LGALS7P47929 136 aa3.98□□□□□ -1.77
VPS13A-207ENST00000419472 CYCSP99999 105 aaKnown RBP3.98□□□□□ -1.77
VPS13A-207ENST00000419472 INSL4Q14641 139 aa3.98□□□□□ -1.77
VPS13A-207ENST00000419472 BSXQ3C1V8 233 aa3.98□□□□□ -1.77
VPS13A-207ENST00000419472 MORN2Q502X0 79 aa3.98□□□□□ -1.77
VPS13A-207ENST00000419472 SLC22A18ASQ8N1D0 253 aa3.98□□□□□ -1.77
VPS13A-207ENST00000419472 Q8WTZ3 238 aa3.98□□□□□ -1.77
VPS13A-207ENST00000419472 FAM222BQ8WU58 562 aa3.98□□□□□ -1.77
VPS13A-207ENST00000419472 ASB17Q8WXJ9 295 aa3.98□□□□□ -1.77
VPS13A-207ENST00000419472 TMEM54Q969K7 222 aa3.98□□□□□ -1.77
VPS13A-207ENST00000419472 TMEM159Q96B96 161 aa3.98□□□□□ -1.77
VPS13A-207ENST00000419472 ADTRPQ96IZ2 230 aa3.98□□□□□ -1.77
VPS13A-207ENST00000419472 GABRG3Q99928 467 aa3.98□□□□□ -1.77
VPS13A-207ENST00000419472 TRPM6Q9BX84 2022 aa3.98□□□□□ -1.77
VPS13A-207ENST00000419472 MYO10Q9HD67 2058 aa3.98□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 71 ms