RNA–Protein interactions for RNA: ENST00000414963.2

SF3B1-204, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 1 (best) BASIC

Gene SF3B1, Length 651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-204ENST00000414963 LPAR6P43657 344 aa11.48□□□□□ -0.57
SF3B1-204ENST00000414963 RAB13P51153 203 aa11.48□□□□□ -0.57
SF3B1-204ENST00000414963 DYNLT3P51808 116 aa11.48□□□□□ -0.57
SF3B1-204ENST00000414963 ARHGDIBP52566 201 aa11.48□□□□□ -0.57
SF3B1-204ENST00000414963 CBX3Q13185 183 aa11.48□□□□□ -0.57
SF3B1-204ENST00000414963 BRD3OSQ6XYD6 125 aa11.48□□□□□ -0.57
SF3B1-204ENST00000414963 MOB3BQ86TA1 216 aa11.48□□□□□ -0.57
SF3B1-204ENST00000414963 THNSL2Q86YJ6 484 aa11.48□□□□□ -0.57
SF3B1-204ENST00000414963 PDPNQ86YL7 162 aa11.48□□□□□ -0.57
SF3B1-204ENST00000414963 SELENOHQ8IZQ5 122 aaKnown RBP11.48□□□□□ -0.57
SF3B1-204ENST00000414963 CADM3Q8N126 398 aa11.48□□□□□ -0.57
SF3B1-204ENST00000414963 OR4S2Q8NH73 311 aa11.48□□□□□ -0.57
SF3B1-204ENST00000414963 SLC35D1Q9NTN3 355 aa11.48□□□□□ -0.57
SF3B1-204ENST00000414963 WASHC3Q9Y3C0 194 aa11.48□□□□□ -0.57
SF3B1-204ENST00000414963 A0A0U1RQK1 487 aa11.47□□□□□ -0.57
SF3B1-204ENST00000414963 DUXBA0A1W2PPF3 345 aa11.47□□□□□ -0.57
SF3B1-204ENST00000414963 CYSRT1A8MQ03 144 aa11.47□□□□□ -0.57
SF3B1-204ENST00000414963 TIMM23O14925 209 aa11.47□□□□□ -0.57
SF3B1-204ENST00000414963 IGKV1-39P01597 117 aa11.47□□□□□ -0.57
SF3B1-204ENST00000414963 IGKV1D-39P04432 117 aa11.47□□□□□ -0.57
SF3B1-204ENST00000414963 EBI3Q14213 229 aa11.47□□□□□ -0.57
SF3B1-204ENST00000414963 AANATQ16613 207 aa11.47□□□□□ -0.57
SF3B1-204ENST00000414963 TUSC1Q2TAM9 212 aa11.47□□□□□ -0.57
SF3B1-204ENST00000414963 TMEM177Q53S58 311 aa11.47□□□□□ -0.57
SF3B1-204ENST00000414963 FAM120AOSQ5T036 256 aa11.47□□□□□ -0.57
SF3B1-204ENST00000414963 LHFPL5Q8TAF8 219 aa11.47□□□□□ -0.57
SF3B1-204ENST00000414963 CHAC2Q8WUX2 184 aa11.47□□□□□ -0.57
SF3B1-204ENST00000414963 RBPMSQ93062 196 aaKnown RBP11.47□□□□□ -0.57
SF3B1-204ENST00000414963 RNF5Q99942 180 aa11.47□□□□□ -0.57
SF3B1-204ENST00000414963 YAE1D1Q9NRH1 226 aa11.47□□□□□ -0.57
SF3B1-204ENST00000414963 COMMD9Q9P000 198 aa11.47□□□□□ -0.57
SF3B1-204ENST00000414963 TLN2Q9Y4G6 2542 aa11.46□□□□□ -0.57
SF3B1-204ENST00000414963 ZNF469Q96JG9 3925 aaPredicted RBP11.46□□□□□ -0.57
SF3B1-204ENST00000414963 SSNA1O43805 119 aa11.46□□□□□ -0.57
SF3B1-204ENST00000414963 ATG12O94817 140 aa11.46□□□□□ -0.57
SF3B1-204ENST00000414963 VENTXO95231 258 aa11.46□□□□□ -0.57
SF3B1-204ENST00000414963 LY6G6DO95868 133 aa11.46□□□□□ -0.57
SF3B1-204ENST00000414963 IGKV1-16P04430 117 aa11.46□□□□□ -0.57
SF3B1-204ENST00000414963 FBP1P09467 338 aa11.46□□□□□ -0.57
SF3B1-204ENST00000414963 BRS3P32247 399 aa11.46□□□□□ -0.57
SF3B1-204ENST00000414963 RRAS2P62070 204 aaPredicted RBP11.46□□□□□ -0.57
SF3B1-204ENST00000414963 POU2AF1Q16633 256 aa11.46□□□□□ -0.57
SF3B1-204ENST00000414963 OR2B11Q5JQS5 317 aa11.46□□□□□ -0.57
SF3B1-204ENST00000414963 TMEM268Q5VZI3 342 aa11.46□□□□□ -0.57
SF3B1-204ENST00000414963 ZNF695Q8IW36 515 aa11.46□□□□□ -0.57
SF3B1-204ENST00000414963 OR4C13Q8NGP0 309 aa11.46□□□□□ -0.57
SF3B1-204ENST00000414963 OSR1Q8TAX0 266 aaPredicted RBP11.46□□□□□ -0.57
SF3B1-204ENST00000414963 FLYWCH2Q96CP2 140 aaKnown RBP11.46□□□□□ -0.57
SF3B1-204ENST00000414963 AIFM2Q9BRQ8 373 aa11.46□□□□□ -0.57
SF3B1-204ENST00000414963 MED28Q9H204 178 aa11.46□□□□□ -0.57
SF3B1-204ENST00000414963 PRDM13Q9H4Q3 707 aa11.46□□□□□ -0.57
SF3B1-204ENST00000414963 RAB18Q9NP72 206 aa11.46□□□□□ -0.57
SF3B1-204ENST00000414963 PRR13Q9NZ81 148 aa11.46□□□□□ -0.57
SF3B1-204ENST00000414963 FAM96BQ9Y3D0 163 aa11.46□□□□□ -0.57
SF3B1-204ENST00000414963 HIVEP1P15822 2718 aa11.45□□□□□ -0.58
SF3B1-204ENST00000414963 HMX3A6NHT5 357 aa11.45□□□□□ -0.58
SF3B1-204ENST00000414963 H7C2Y5 167 aa11.45□□□□□ -0.58
SF3B1-204ENST00000414963 S1PR2O95136 353 aa11.45□□□□□ -0.58
SF3B1-204ENST00000414963 CRYZL1O95825 349 aa11.45□□□□□ -0.58
SF3B1-204ENST00000414963 P0C879 139 aa11.45□□□□□ -0.58
SF3B1-204ENST00000414963 TRAPPC2P0DI81 140 aa11.45□□□□□ -0.58
SF3B1-204ENST00000414963 TRAPPC2BP0DI82 140 aa11.45□□□□□ -0.58
SF3B1-204ENST00000414963 SULT1A3P0DMM9 295 aa11.45□□□□□ -0.58
SF3B1-204ENST00000414963 SULT1A4P0DMN0 295 aa11.45□□□□□ -0.58
SF3B1-204ENST00000414963 VDAC1P21796 283 aa11.45□□□□□ -0.58
SF3B1-204ENST00000414963 LGALS7P47929 136 aa11.45□□□□□ -0.58
SF3B1-204ENST00000414963 LIN54Q6MZP7 749 aa11.45□□□□□ -0.58
SF3B1-204ENST00000414963 LYZL2Q7Z4W2 148 aa11.45□□□□□ -0.58
SF3B1-204ENST00000414963 LSM10Q969L4 123 aaKnown RBP11.45□□□□□ -0.58
SF3B1-204ENST00000414963 SEC22AQ96IW7 307 aa11.45□□□□□ -0.58
SF3B1-204ENST00000414963 MS4A7Q9GZW8 240 aaPredicted RBP11.45□□□□□ -0.58
SF3B1-204ENST00000414963 TMED3Q9Y3Q3 217 aa11.45□□□□□ -0.58
SF3B1-204ENST00000414963 CELSR1Q9NYQ6 3014 aa11.44□□□□□ -0.58
SF3B1-204ENST00000414963 IGHV3-72A0A0B4J1Y9 119 aa11.44□□□□□ -0.58
SF3B1-204ENST00000414963 MOSP00540 346 aa11.44□□□□□ -0.58
SF3B1-204ENST00000414963 HRASP01112 189 aa11.44□□□□□ -0.58
SF3B1-204ENST00000414963 IGKV1-5P01602 117 aa11.44□□□□□ -0.58
SF3B1-204ENST00000414963 FAM106CPP0CH98 169 aa11.44□□□□□ -0.58
SF3B1-204ENST00000414963 NQO2P16083 231 aa11.44□□□□□ -0.58
SF3B1-204ENST00000414963 HNF1AP20823 631 aa11.44□□□□□ -0.58
SF3B1-204ENST00000414963 BCAP31P51572 246 aa11.44□□□□□ -0.58
SF3B1-204ENST00000414963 NMSQ5H8A3 153 aa11.44□□□□□ -0.58
SF3B1-204ENST00000414963 FAM219AQ8IW50 185 aa11.44□□□□□ -0.58
SF3B1-204ENST00000414963 Q8N6K4 173 aa11.44□□□□□ -0.58
SF3B1-204ENST00000414963 SLC35G3Q8N808 338 aa11.44□□□□□ -0.58
SF3B1-204ENST00000414963 UXS1Q8NBZ7 420 aa11.44□□□□□ -0.58
SF3B1-204ENST00000414963 OR2T10Q8NGZ9 312 aa11.44□□□□□ -0.58
SF3B1-204ENST00000414963 PIFOQ8TCI5 191 aa11.44□□□□□ -0.58
SF3B1-204ENST00000414963 R3HDM4Q96D70 268 aa11.44□□□□□ -0.58
SF3B1-204ENST00000414963 SMR3AQ99954 134 aa11.44□□□□□ -0.58
SF3B1-204ENST00000414963 SOX21Q9Y651 276 aaPredicted RBP11.44□□□□□ -0.58
SF3B1-204ENST00000414963 SRRM4A7MD48 611 aaKnown RBP11.43□□□□□ -0.58
SF3B1-204ENST00000414963 KRASP01116 189 aa11.43□□□□□ -0.58
SF3B1-204ENST00000414963 IFNA21P01568 189 aa11.43□□□□□ -0.58
SF3B1-204ENST00000414963 IL6RP08887 468 aaPredicted RBP11.43□□□□□ -0.58
SF3B1-204ENST00000414963 PAX6P26367 422 aa11.43□□□□□ -0.58
SF3B1-204ENST00000414963 FCN2Q15485 313 aa11.43□□□□□ -0.58
SF3B1-204ENST00000414963 C2orf68Q2NKX9 166 aa11.43□□□□□ -0.58
SF3B1-204ENST00000414963 GGNBP1Q5YKI7 109 aa11.43□□□□□ -0.58
SF3B1-204ENST00000414963 BCL6BQ8N143 479 aaPredicted RBP11.43□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 50.2 ms