RNA–Protein interactions for RNA: ENST00000378839.1

CCDC3-202, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene CCDC3, Length 3,180 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-202ENST00000378839 FAM90A2PQ658T7 463 aa11.09□□□□□ -0.63
CCDC3-202ENST00000378839 ZNF343Q6P1L6 599 aa11.09□□□□□ -0.63
CCDC3-202ENST00000378839 ZNF429Q86V71 674 aa11.09□□□□□ -0.63
CCDC3-202ENST00000378839 ITLN1Q8WWA0 313 aa11.09□□□□□ -0.63
CCDC3-202ENST00000378839 MBD3L1Q8WWY6 194 aa11.09□□□□□ -0.63
CCDC3-202ENST00000378839 PSMG3Q9BT73 122 aaPredicted RBP11.09□□□□□ -0.63
CCDC3-202ENST00000378839 QTRT1Q9BXR0 403 aaKnown RBP11.09□□□□□ -0.63
CCDC3-202ENST00000378839 DCAF16Q9NXF7 216 aa11.09□□□□□ -0.63
CCDC3-202ENST00000378839 HMGB3O15347 200 aaKnown RBP11.09□□□□□ -0.63
CCDC3-202ENST00000378839 CLDN14O95500 239 aa11.09□□□□□ -0.63
CCDC3-202ENST00000378839 MT-ND4LP03901 98 aa11.09□□□□□ -0.63
CCDC3-202ENST00000378839 RAB5AP20339 215 aa11.09□□□□□ -0.63
CCDC3-202ENST00000378839 MDKP21741 143 aaPredicted RBP11.09□□□□□ -0.63
CCDC3-202ENST00000378839 DUTP33316 252 aaKnown RBP11.09□□□□□ -0.63
CCDC3-202ENST00000378839 HTD2P86397 168 aa11.09□□□□□ -0.63
CCDC3-202ENST00000378839 TFF3Q07654 80 aa11.09□□□□□ -0.63
CCDC3-202ENST00000378839 KIAA0141Q14154 515 aaPredicted RBP11.09□□□□□ -0.63
CCDC3-202ENST00000378839 PYY3Q5JQD4 70 aa11.09□□□□□ -0.63
CCDC3-202ENST00000378839 MRPL37Q9BZE1 423 aaKnown RBP11.09□□□□□ -0.63
CCDC3-202ENST00000378839 FAM234AQ9H0X4 552 aa11.09□□□□□ -0.63
CCDC3-202ENST00000378839 ZFP92A6NM28 416 aa11.08□□□□□ -0.64
CCDC3-202ENST00000378839 EIF2S3P41091 472 aaKnown RBP11.08□□□□□ -0.64
CCDC3-202ENST00000378839 C1orf185Q5T7R7 199 aa11.08□□□□□ -0.64
CCDC3-202ENST00000378839 MUCL1Q96DR8 90 aa11.08□□□□□ -0.64
CCDC3-202ENST00000378839 CTNNBIP1Q9NSA3 81 aaPredicted RBP11.08□□□□□ -0.64
CCDC3-202ENST00000378839 ICE1Q9Y2F5 2266 aa11.08□□□□□ -0.64
CCDC3-202ENST00000378839 MARCH11A6NNE9 402 aa11.08□□□□□ -0.64
CCDC3-202ENST00000378839 SOX15O60248 233 aa11.08□□□□□ -0.64
CCDC3-202ENST00000378839 CCKARP32238 428 aa11.08□□□□□ -0.64
CCDC3-202ENST00000378839 HBG1P69891 147 aa11.08□□□□□ -0.64
CCDC3-202ENST00000378839 HBG2P69892 147 aa11.08□□□□□ -0.64
CCDC3-202ENST00000378839 DLK1P80370 383 aa11.08□□□□□ -0.64
CCDC3-202ENST00000378839 CR1LQ2VPA4 569 aa11.08□□□□□ -0.64
CCDC3-202ENST00000378839 ZNF787Q6DD87 383 aa11.08□□□□□ -0.64
CCDC3-202ENST00000378839 DTD1Q8TEA8 209 aa11.08□□□□□ -0.64
CCDC3-202ENST00000378839 TMPRSS5Q9H3S3 457 aa11.08□□□□□ -0.64
CCDC3-202ENST00000378839 TRAV3A0A0B4J244 114 aa11.08□□□□□ -0.64
CCDC3-202ENST00000378839 PIGBOS1A0A0B4J2F0 54 aa11.08□□□□□ -0.64
CCDC3-202ENST00000378839 KLK10O43240 276 aa11.08□□□□□ -0.64
CCDC3-202ENST00000378839 CFHR2P36980 270 aa11.08□□□□□ -0.64
CCDC3-202ENST00000378839 Q8N7P7 452 aa11.08□□□□□ -0.64
CCDC3-202ENST00000378839 ATG101Q9BSB4 218 aa11.08□□□□□ -0.64
CCDC3-202ENST00000378839 IGLV3-9A0A075B6K5 115 aa11.07□□□□□ -0.64
CCDC3-202ENST00000378839 RAB29O14966 203 aa11.07□□□□□ -0.64
CCDC3-202ENST00000378839 CGB3P0DN86 165 aa11.07□□□□□ -0.64
CCDC3-202ENST00000378839 CGB7P0DN87 165 aa11.07□□□□□ -0.64
CCDC3-202ENST00000378839 COL8A2P25067 703 aa11.07□□□□□ -0.64
CCDC3-202ENST00000378839 CATR1Q13166 79 aa11.07□□□□□ -0.64
CCDC3-202ENST00000378839 C17orf58Q2M2W7 97 aa11.07□□□□□ -0.64
CCDC3-202ENST00000378839 RNF212Q495C1 297 aa11.07□□□□□ -0.64
CCDC3-202ENST00000378839 TMEM41BQ5BJD5 291 aa11.07□□□□□ -0.64
CCDC3-202ENST00000378839 TCF23Q7RTU1 214 aa11.07□□□□□ -0.64
CCDC3-202ENST00000378839 SNRNP40Q96DI7 357 aaKnown RBP11.07□□□□□ -0.64
CCDC3-202ENST00000378839 PARD6GQ9BYG4 376 aaPredicted RBP11.07□□□□□ -0.64
CCDC3-202ENST00000378839 IFI27L2Q9H2X8 130 aa11.07□□□□□ -0.64
CCDC3-202ENST00000378839 SPINT2O43291 252 aa11.07□□□□□ -0.64
CCDC3-202ENST00000378839 S100A2P29034 98 aa11.07□□□□□ -0.64
CCDC3-202ENST00000378839 GLRXP35754 106 aa11.07□□□□□ -0.64
CCDC3-202ENST00000378839 ZNF124Q15973 351 aa11.07□□□□□ -0.64
CCDC3-202ENST00000378839 KHDC3LQ587J8 217 aa11.07□□□□□ -0.64
CCDC3-202ENST00000378839 FAM180AQ6UWF9 173 aa11.07□□□□□ -0.64
CCDC3-202ENST00000378839 ZNF66Q6ZN08 573 aa11.07□□□□□ -0.64
CCDC3-202ENST00000378839 H2BFWTQ7Z2G1 175 aa11.07□□□□□ -0.64
CCDC3-202ENST00000378839 ZNF561Q8N587 486 aa11.07□□□□□ -0.64
CCDC3-202ENST00000378839 GATAD1Q8WUU5 269 aa11.07□□□□□ -0.64
CCDC3-202ENST00000378839 SNX22Q96L94 193 aa11.07□□□□□ -0.64
CCDC3-202ENST00000378839 RAI1Q7Z5J4 1906 aaPredicted RBP11.06□□□□□ -0.64
CCDC3-202ENST00000378839 CEP250Q9BV73 2442 aa11.06□□□□□ -0.64
CCDC3-202ENST00000378839 UBE2CO00762 179 aa11.06□□□□□ -0.64
CCDC3-202ENST00000378839 FCGR3BO75015 233 aa11.06□□□□□ -0.64
CCDC3-202ENST00000378839 OR2C1O95371 312 aa11.06□□□□□ -0.64
CCDC3-202ENST00000378839 CXCL1P09341 107 aa11.06□□□□□ -0.64
CCDC3-202ENST00000378839 BCL2P10415 239 aa11.06□□□□□ -0.64
CCDC3-202ENST00000378839 MAS1LP35410 378 aa11.06□□□□□ -0.64
CCDC3-202ENST00000378839 KLF3P57682 345 aaPredicted RBP11.06□□□□□ -0.64
CCDC3-202ENST00000378839 MSMO1Q15800 293 aa11.06□□□□□ -0.64
CCDC3-202ENST00000378839 ZNF674Q2M3X9 581 aa11.06□□□□□ -0.64
CCDC3-202ENST00000378839 CENPVQ7Z7K6 275 aaPredicted RBP11.06□□□□□ -0.64
CCDC3-202ENST00000378839 C15orf62A8K5M9 175 aa11.06□□□□□ -0.64
CCDC3-202ENST00000378839 CYB5R3P00387 301 aaPredicted RBP11.06□□□□□ -0.64
CCDC3-202ENST00000378839 HBE1P02100 147 aa11.06□□□□□ -0.64
CCDC3-202ENST00000378839 CEACAM8P31997 349 aaPredicted RBP11.06□□□□□ -0.64
CCDC3-202ENST00000378839 TIMP3P35625 211 aa11.06□□□□□ -0.64
CCDC3-202ENST00000378839 TAGLN2P37802 199 aaKnown RBP11.06□□□□□ -0.64
CCDC3-202ENST00000378839 EDDM3BP56851 147 aa11.06□□□□□ -0.64
CCDC3-202ENST00000378839 ERVFRD-1P60508 538 aa11.06□□□□□ -0.64
CCDC3-202ENST00000378839 GAMTQ14353 236 aa11.06□□□□□ -0.64
CCDC3-202ENST00000378839 MUC6Q6W4X9 2439 aa11.06□□□□□ -0.64
CCDC3-202ENST00000378839 HEPN1Q6WQI6 88 aa11.06□□□□□ -0.64
CCDC3-202ENST00000378839 R3HDM4Q96D70 268 aa11.06□□□□□ -0.64
CCDC3-202ENST00000378839 HSD17B10Q99714 261 aaKnown RBP11.06□□□□□ -0.64
CCDC3-202ENST00000378839 SSX3Q99909 188 aa11.06□□□□□ -0.64
CCDC3-202ENST00000378839 GCM1Q9NP62 436 aa11.06□□□□□ -0.64
CCDC3-202ENST00000378839 CISD1Q9NZ45 108 aaKnown RBP11.06□□□□□ -0.64
CCDC3-202ENST00000378839 GNG12Q9UBI6 72 aa11.06□□□□□ -0.64
CCDC3-202ENST00000378839 MGST3O14880 152 aa11.06□□□□□ -0.64
CCDC3-202ENST00000378839 CRYAAP02489 173 aa11.06□□□□□ -0.64
CCDC3-202ENST00000378839 ADH4P08319 380 aa11.06□□□□□ -0.64
CCDC3-202ENST00000378839 BMP5P22003 454 aa11.06□□□□□ -0.64
CCDC3-202ENST00000378839 GPR12P47775 334 aa11.06□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms