RNA–Protein interactions for RNA: ENST00000373006.5

USP49-201, Transcript of ubiquitin specific peptidase 49, humanhuman

TSL 1 (best) BASIC

Gene USP49, Length 3,177 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP49-201ENST00000373006 PCED1AQ9H1Q7 454 aa11.53□□□□□ -0.56
USP49-201ENST00000373006 ANKRD30BLA7E2S9 258 aa11.52□□□□□ -0.57
USP49-201ENST00000373006 SPINK4O60575 86 aa11.52□□□□□ -0.57
USP49-201ENST00000373006 CDKN1AP38936 164 aa11.52□□□□□ -0.57
USP49-201ENST00000373006 LPAL2Q16609 132 aa11.52□□□□□ -0.57
USP49-201ENST00000373006 ZNF573Q86YE8 665 aa11.52□□□□□ -0.57
USP49-201ENST00000373006 VAMP8Q9BV40 100 aa11.52□□□□□ -0.57
USP49-201ENST00000373006 NPCDR1Q9BY65 106 aa11.52□□□□□ -0.57
USP49-201ENST00000373006 PARD6GQ9BYG4 376 aaPredicted RBP11.52□□□□□ -0.57
USP49-201ENST00000373006 MANBALQ9NQG1 85 aa11.52□□□□□ -0.57
USP49-201ENST00000373006 LOC400499M0QZD8 3231 aa11.52□□□□□ -0.57
USP49-201ENST00000373006 TYMSP04818 313 aa11.52□□□□□ -0.57
USP49-201ENST00000373006 HINT1P49773 126 aaPredicted RBP11.52□□□□□ -0.57
USP49-201ENST00000373006 GNB1P62873 340 aa11.52□□□□□ -0.57
USP49-201ENST00000373006 MED12LQ86YW9 2145 aa11.52□□□□□ -0.57
USP49-201ENST00000373006 SGMS2Q8NHU3 365 aa11.52□□□□□ -0.57
USP49-201ENST00000373006 TMEM147Q9BVK8 224 aa11.52□□□□□ -0.57
USP49-201ENST00000373006 TIMM9Q9Y5J7 89 aa11.52□□□□□ -0.57
USP49-201ENST00000373006 EP300Q09472 2414 aaPredicted RBP11.51□□□□□ -0.57
USP49-201ENST00000373006 TRBV6-6A0A0A6YYG2 114 aa11.51□□□□□ -0.57
USP49-201ENST00000373006 PIGBOS1A0A0B4J2F0 54 aa11.51□□□□□ -0.57
USP49-201ENST00000373006 RPL15P61313 204 aaKnown RBP11.51□□□□□ -0.57
USP49-201ENST00000373006 RPL30P62888 115 aaKnown RBP11.51□□□□□ -0.57
USP49-201ENST00000373006 HOXA4Q00056 320 aaPredicted RBP11.51□□□□□ -0.57
USP49-201ENST00000373006 SPEM1Q8N4L4 309 aa11.51□□□□□ -0.57
USP49-201ENST00000373006 HSPB9Q9BQS6 159 aa11.51□□□□□ -0.57
USP49-201ENST00000373006 STRADBQ9C0K7 418 aa11.51□□□□□ -0.57
USP49-201ENST00000373006 ODAMA1E959 279 aa11.51□□□□□ -0.57
USP49-201ENST00000373006 PATE3B3GLJ2 98 aa11.51□□□□□ -0.57
USP49-201ENST00000373006 OR2H2O95918 312 aa11.51□□□□□ -0.57
USP49-201ENST00000373006 PPP1CBP62140 327 aa11.51□□□□□ -0.57
USP49-201ENST00000373006 GNG3P63215 75 aa11.51□□□□□ -0.57
USP49-201ENST00000373006 LYSMD4Q5XG99 296 aa11.51□□□□□ -0.57
USP49-201ENST00000373006 MCEMP1Q8IX19 187 aa11.51□□□□□ -0.57
USP49-201ENST00000373006 IFI44Q8TCB0 444 aa11.51□□□□□ -0.57
USP49-201ENST00000373006 COLQQ9Y215 455 aaPredicted RBP11.51□□□□□ -0.57
USP49-201ENST00000373006 CEBPDP49716 269 aaPredicted RBP11.51□□□□□ -0.57
USP49-201ENST00000373006 SPINK14Q6IE38 97 aa11.51□□□□□ -0.57
USP49-201ENST00000373006 Q6P435 159 aa11.51□□□□□ -0.57
USP49-201ENST00000373006 DUSP23Q9BVJ7 150 aa11.51□□□□□ -0.57
USP49-201ENST00000373006 HSPB7Q9UBY9 170 aa11.51□□□□□ -0.57
USP49-201ENST00000373006 LRP5LA4QPB2 252 aa11.5□□□□□ -0.57
USP49-201ENST00000373006 RBFOX2O43251 390 aaKnown RBP eCLIP11.5□□□□□ -0.57
USP49-201ENST00000373006 S1PR2O95136 353 aa11.5□□□□□ -0.57
USP49-201ENST00000373006 CELA3AP09093 270 aa11.5□□□□□ -0.57
USP49-201ENST00000373006 COL8A2P25067 703 aa11.5□□□□□ -0.57
USP49-201ENST00000373006 OR10J1P30954 320 aa11.5□□□□□ -0.57
USP49-201ENST00000373006 Q0VFX4 171 aa11.5□□□□□ -0.57
USP49-201ENST00000373006 UNQ5815/PRO19632Q6UWF5 114 aa11.5□□□□□ -0.57
USP49-201ENST00000373006 OR2Y1Q8NGV0 311 aa11.5□□□□□ -0.57
USP49-201ENST00000373006 WDYHV1Q96HA8 205 aa11.5□□□□□ -0.57
USP49-201ENST00000373006 OR2D2Q9H210 308 aa11.5□□□□□ -0.57
USP49-201ENST00000373006 PXMP4Q9Y6I8 212 aa11.5□□□□□ -0.57
USP49-201ENST00000373006 LRRC30A6NM36 301 aa11.5□□□□□ -0.57
USP49-201ENST00000373006 PMS2P5A8MQ11 134 aa11.5□□□□□ -0.57
USP49-201ENST00000373006 VENTXO95231 258 aa11.5□□□□□ -0.57
USP49-201ENST00000373006 ADMP35318 185 aa11.5□□□□□ -0.57
USP49-201ENST00000373006 CDC34P49427 236 aaPredicted RBP11.5□□□□□ -0.57
USP49-201ENST00000373006 EDDM3BP56851 147 aa11.5□□□□□ -0.57
USP49-201ENST00000373006 NUFIP2Q7Z417 695 aaKnown RBP11.5□□□□□ -0.57
USP49-201ENST00000373006 TMEM210A6NLX4 147 aa11.49□□□□□ -0.57
USP49-201ENST00000373006 CCL25O15444 150 aa11.49□□□□□ -0.57
USP49-201ENST00000373006 THBS3P49746 956 aa11.49□□□□□ -0.57
USP49-201ENST00000373006 LCN2P80188 198 aa11.49□□□□□ -0.57
USP49-201ENST00000373006 TGFBR3Q03167 851 aa11.49□□□□□ -0.57
USP49-201ENST00000373006 SAP25Q8TEE9 199 aa11.49□□□□□ -0.57
USP49-201ENST00000373006 POM121L2Q96KW2 1035 aa11.49□□□□□ -0.57
USP49-201ENST00000373006 C17orf98A8MV24 154 aa11.49□□□□□ -0.57
USP49-201ENST00000373006 MLNRO43193 412 aa11.49□□□□□ -0.57
USP49-201ENST00000373006 LINC00614P0C842 121 aa11.49□□□□□ -0.57
USP49-201ENST00000373006 ZNF497Q6ZNH5 498 aa11.49□□□□□ -0.57
USP49-201ENST00000373006 ICE1Q9Y2F5 2266 aa11.49□□□□□ -0.57
USP49-201ENST00000373006 SYNGR4O95473 234 aa11.49□□□□□ -0.57
USP49-201ENST00000373006 SERPINA7P05543 415 aa11.49□□□□□ -0.57
USP49-201ENST00000373006 OR5G3P0C626 314 aa11.49□□□□□ -0.57
USP49-201ENST00000373006 COL5A1-AS1Q5SY13 56 aa11.49□□□□□ -0.57
USP49-201ENST00000373006 LINC00596Q86U02 117 aa11.49□□□□□ -0.57
USP49-201ENST00000373006 OR52L2PQ8NGH6 319 aa11.49□□□□□ -0.57
USP49-201ENST00000373006 CTNNBIP1Q9NSA3 81 aaPredicted RBP11.49□□□□□ -0.57
USP49-201ENST00000373006 SPTBN2O15020 2390 aa11.48□□□□□ -0.57
USP49-201ENST00000373006 TRBV20OR9-2A0A075B6H5 130 aa11.48□□□□□ -0.57
USP49-201ENST00000373006 KIR2DL5BA0A0G2JN68 375 aa11.48□□□□□ -0.57
USP49-201ENST00000373006 KIR2DL5BA0A0G2JPC4 375 aa11.48□□□□□ -0.57
USP49-201ENST00000373006 FAM90A26D6RGX4 464 aa11.48□□□□□ -0.57
USP49-201ENST00000373006 CDIPTO14735 213 aa11.48□□□□□ -0.57
USP49-201ENST00000373006 FOLR3P41439 243 aa11.48□□□□□ -0.57
USP49-201ENST00000373006 SOX8P57073 446 aa11.48□□□□□ -0.57
USP49-201ENST00000373006 MSMO1Q15800 293 aa11.48□□□□□ -0.57
USP49-201ENST00000373006 LEMD1Q68G75 181 aa11.48□□□□□ -0.57
USP49-201ENST00000373006 BAGE3Q86Y29 109 aa11.48□□□□□ -0.57
USP49-201ENST00000373006 BAGE2Q86Y30 109 aa11.48□□□□□ -0.57
USP49-201ENST00000373006 KIR2DL5AQ8N109 375 aa11.48□□□□□ -0.57
USP49-201ENST00000373006 STPG4Q8N801 248 aa11.48□□□□□ -0.57
USP49-201ENST00000373006 CMTM2Q8TAZ6 248 aa11.48□□□□□ -0.57
USP49-201ENST00000373006 ZCCHC14Q8WYQ9 949 aaKnown RBP11.48□□□□□ -0.57
USP49-201ENST00000373006 C5orf30Q96GV9 206 aa11.48□□□□□ -0.57
USP49-201ENST00000373006 ZDHHC11Q9H8X9 412 aa11.48□□□□□ -0.57
USP49-201ENST00000373006 NPIPB11E5RHQ5 1161 aa11.48□□□□□ -0.57
USP49-201ENST00000373006 TFF1P04155 84 aa11.48□□□□□ -0.57
USP49-201ENST00000373006 CBLN1P23435 193 aa11.48□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms