RNA–Protein interactions for RNA: ENST00000360579.11

VPS29-201, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 1,091 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-201ENST00000360579 LGALS9O00182 355 aa10.38□□□□□ -0.75
VPS29-201ENST00000360579 RBMXL2O75526 392 aaKnown RBP10.38□□□□□ -0.75
VPS29-201ENST00000360579 CD1AP06126 327 aa10.38□□□□□ -0.75
VPS29-201ENST00000360579 APELAP0DMC3 54 aa10.38□□□□□ -0.75
VPS29-201ENST00000360579 ATF4P18848 351 aaPredicted RBP10.38□□□□□ -0.75
VPS29-201ENST00000360579 RTL8BQ17RB0 113 aa10.38□□□□□ -0.75
VPS29-201ENST00000360579 VMA21Q3ZAQ7 101 aa10.38□□□□□ -0.75
VPS29-201ENST00000360579 TMEM177Q53S58 311 aa10.38□□□□□ -0.75
VPS29-201ENST00000360579 OR10K2Q6IF99 312 aa10.38□□□□□ -0.75
VPS29-201ENST00000360579 WFDC3Q8IUB2 231 aa10.38□□□□□ -0.75
VPS29-201ENST00000360579 NECAP1Q8NC96 275 aa10.38□□□□□ -0.75
VPS29-201ENST00000360579 OR52B4Q8NGK2 314 aa10.38□□□□□ -0.75
VPS29-201ENST00000360579 TMEM80Q96HE8 168 aa10.38□□□□□ -0.75
VPS29-201ENST00000360579 C12orf4Q9NQ89 552 aa10.38□□□□□ -0.75
VPS29-201ENST00000360579 RDH8Q9NYR8 311 aa10.38□□□□□ -0.75
VPS29-201ENST00000360579 KIAA1109Q2LD37 5005 aa10.37□□□□□ -0.75
VPS29-201ENST00000360579 A0A0J9YWU9 116 aa10.37□□□□□ -0.75
VPS29-201ENST00000360579 CREBL2O60519 120 aaPredicted RBP10.37□□□□□ -0.75
VPS29-201ENST00000360579 GGCTO75223 188 aaKnown RBP10.37□□□□□ -0.75
VPS29-201ENST00000360579 BPNT1O95861 308 aa10.37□□□□□ -0.75
VPS29-201ENST00000360579 SCTP09683 121 aa10.37□□□□□ -0.75
VPS29-201ENST00000360579 RRASP10301 218 aa10.37□□□□□ -0.75
VPS29-201ENST00000360579 BMI1P35226 326 aa10.37□□□□□ -0.75
VPS29-201ENST00000360579 SERPINB10P48595 397 aa10.37□□□□□ -0.75
VPS29-201ENST00000360579 TNXAQ16473 311 aa10.37□□□□□ -0.75
VPS29-201ENST00000360579 PRSS8Q16651 343 aa10.37□□□□□ -0.75
VPS29-201ENST00000360579 ZNF57Q68EA5 555 aaPredicted RBP10.37□□□□□ -0.75
VPS29-201ENST00000360579 TMEM217Q8N7C4 229 aa10.37□□□□□ -0.75
VPS29-201ENST00000360579 TEX45Q8NA69 505 aa10.37□□□□□ -0.75
VPS29-201ENST00000360579 ZNF485Q8NCK3 441 aa10.37□□□□□ -0.75
VPS29-201ENST00000360579 ZNF555Q8NEP9 628 aa10.37□□□□□ -0.75
VPS29-201ENST00000360579 SRSF12Q8WXF0 261 aaKnown RBP10.37□□□□□ -0.75
VPS29-201ENST00000360579 SPIN2AQ99865 258 aa10.37□□□□□ -0.75
VPS29-201ENST00000360579 SPIN2BQ9BPZ2 258 aa10.37□□□□□ -0.75
VPS29-201ENST00000360579 NICN1Q9BSH3 213 aa10.37□□□□□ -0.75
VPS29-201ENST00000360579 Q9N2K0 584 aa10.37□□□□□ -0.75
VPS29-201ENST00000360579 AK3Q9UIJ7 227 aa10.37□□□□□ -0.75
VPS29-201ENST00000360579 VPS13DQ5THJ4 4388 aa10.36□□□□□ -0.75
VPS29-201ENST00000360579 PNMA8CA0A1B0GUJ8 204 aa10.36□□□□□ -0.75
VPS29-201ENST00000360579 ACTL6BO94805 426 aa10.36□□□□□ -0.75
VPS29-201ENST00000360579 SRMP19623 302 aa10.36□□□□□ -0.75
VPS29-201ENST00000360579 CELP19835 753 aa10.36□□□□□ -0.75
VPS29-201ENST00000360579 CBLN1P23435 193 aa10.36□□□□□ -0.75
VPS29-201ENST00000360579 UBE2KP61086 200 aa10.36□□□□□ -0.75
VPS29-201ENST00000360579 UNC119Q13432 240 aa10.36□□□□□ -0.75
VPS29-201ENST00000360579 TPBGQ13641 420 aa10.36□□□□□ -0.75
VPS29-201ENST00000360579 C1orf100Q5SVJ3 147 aa10.36□□□□□ -0.75
VPS29-201ENST00000360579 LGALS9CQ6DKI2 356 aa10.36□□□□□ -0.75
VPS29-201ENST00000360579 Q6ZWC4 215 aa10.36□□□□□ -0.75
VPS29-201ENST00000360579 LYG2Q86SG7 212 aa10.36□□□□□ -0.75
VPS29-201ENST00000360579 SLC25A42Q86VD7 318 aa10.36□□□□□ -0.75
VPS29-201ENST00000360579 GPHB5Q86YW7 130 aa10.36□□□□□ -0.75
VPS29-201ENST00000360579 GGHQ92820 318 aa10.36□□□□□ -0.75
VPS29-201ENST00000360579 URM1Q9BTM9 101 aaKnown RBP10.36□□□□□ -0.75
VPS29-201ENST00000360579 SRRM4A7MD48 611 aaKnown RBP10.35□□□□□ -0.75
VPS29-201ENST00000360579 TMEM14DPA8MWL7 114 aa10.35□□□□□ -0.75
VPS29-201ENST00000360579 PRH1P02810 166 aa10.35□□□□□ -0.75
VPS29-201ENST00000360579 APOC4P55056 127 aa10.35□□□□□ -0.75
VPS29-201ENST00000360579 ZNF45Q02386 682 aa10.35□□□□□ -0.75
VPS29-201ENST00000360579 C15orf32Q32M92 178 aa10.35□□□□□ -0.75
VPS29-201ENST00000360579 C10orf67Q8IYJ2 551 aa10.35□□□□□ -0.75
VPS29-201ENST00000360579 TMEM61Q8N0U2 210 aa10.35□□□□□ -0.75
VPS29-201ENST00000360579 TTC9CQ8N5M4 171 aa10.35□□□□□ -0.75
VPS29-201ENST00000360579 ACOT12Q8WYK0 555 aa10.35□□□□□ -0.75
VPS29-201ENST00000360579 PHYHIPQ92561 330 aa10.35□□□□□ -0.75
VPS29-201ENST00000360579 HDHD3Q9BSH5 251 aaPredicted RBP10.35□□□□□ -0.75
VPS29-201ENST00000360579 OR2D2Q9H210 308 aa10.35□□□□□ -0.75
VPS29-201ENST00000360579 SDHAF2Q9NX18 166 aa10.35□□□□□ -0.75
VPS29-201ENST00000360579 HSF4Q9ULV5 492 aa10.35□□□□□ -0.75
VPS29-201ENST00000360579 IGKV1-6A0A0C4DH72 117 aa10.34□□□□□ -0.75
VPS29-201ENST00000360579 EFCAB10A6NFE3 127 aa10.34□□□□□ -0.75
VPS29-201ENST00000360579 TRDCB7Z8K6 153 aa10.34□□□□□ -0.75
VPS29-201ENST00000360579 PPP5D1E7EU14 171 aa10.34□□□□□ -0.75
VPS29-201ENST00000360579 UBE2CO00762 179 aa10.34□□□□□ -0.75
VPS29-201ENST00000360579 SPRY2O43597 315 aa10.34□□□□□ -0.75
VPS29-201ENST00000360579 OR2C1O95371 312 aa10.34□□□□□ -0.75
VPS29-201ENST00000360579 MRGPRG-AS1Q2M3A8 158 aa10.34□□□□□ -0.75
VPS29-201ENST00000360579 FAM106AQ4KMX7 169 aa10.34□□□□□ -0.75
VPS29-201ENST00000360579 OR4A47Q6IF82 309 aa10.34□□□□□ -0.75
VPS29-201ENST00000360579 OR4A4PQ8NGN8 299 aa10.34□□□□□ -0.75
VPS29-201ENST00000360579 GATAD1Q8WUU5 269 aa10.34□□□□□ -0.75
VPS29-201ENST00000360579 ADTRPQ96IZ2 230 aa10.34□□□□□ -0.75
VPS29-201ENST00000360579 A0A0A6YYD4 124 aa10.33□□□□□ -0.76
VPS29-201ENST00000360579 TRAV25A0A0B4J276 109 aa10.33□□□□□ -0.76
VPS29-201ENST00000360579 LOC100996750A0A140TA64 210 aa10.33□□□□□ -0.76
VPS29-201ENST00000360579 A8MWP6 167 aa10.33□□□□□ -0.76
VPS29-201ENST00000360579 SOCS1O15524 211 aa10.33□□□□□ -0.76
VPS29-201ENST00000360579 DEDDO75618 318 aa10.33□□□□□ -0.76
VPS29-201ENST00000360579 OR2J3O76001 311 aa10.33□□□□□ -0.76
VPS29-201ENST00000360579 HLA-AP01891 365 aaKnown RBP10.33□□□□□ -0.76
VPS29-201ENST00000360579 EDN2P20800 178 aa10.33□□□□□ -0.76
VPS29-201ENST00000360579 QRFPP83859 136 aa10.33□□□□□ -0.76
VPS29-201ENST00000360579 EWSR1Q01844 656 aaKnown RBP eCLIP10.33□□□□□ -0.76
VPS29-201ENST00000360579 ST3GAL4Q11206 333 aa10.33□□□□□ -0.76
VPS29-201ENST00000360579 TM4SF20Q53R12 229 aa10.33□□□□□ -0.76
VPS29-201ENST00000360579 RBM48Q5RL73 367 aaKnown RBP10.33□□□□□ -0.76
VPS29-201ENST00000360579 FAM89BQ8N5H3 189 aa10.33□□□□□ -0.76
VPS29-201ENST00000360579 OR6M1Q8NGM8 313 aa10.33□□□□□ -0.76
VPS29-201ENST00000360579 OSR1Q8TAX0 266 aaPredicted RBP10.33□□□□□ -0.76
VPS29-201ENST00000360579 CMSS1Q9BQ75 279 aaKnown RBP10.33□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms