RNA–Protein interactions for RNA: ENST00000347617.10

HMGA1-202, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,773 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-202ENST00000347617 FAM166BA8MTA8 275 aa13.34□□□□□ -0.27
HMGA1-202ENST00000347617 IL6RP08887 468 aaPredicted RBP13.34□□□□□ -0.27
HMGA1-202ENST00000347617 CELA3AP09093 270 aa13.34□□□□□ -0.27
HMGA1-202ENST00000347617 WT1P19544 449 aaPredicted RBP13.34□□□□□ -0.27
HMGA1-202ENST00000347617 CHRNA7P36544 502 aa13.34□□□□□ -0.27
HMGA1-202ENST00000347617 CCL11P51671 97 aa13.34□□□□□ -0.27
HMGA1-202ENST00000347617 MRPS11P82912 194 aaKnown RBP13.34□□□□□ -0.27
HMGA1-202ENST00000347617 TPTE2P1Q5T6R2 138 aa13.34□□□□□ -0.27
HMGA1-202ENST00000347617 OR8G2PQ6IF36 304 aa13.34□□□□□ -0.27
HMGA1-202ENST00000347617 MRPL21Q7Z2W9 205 aaKnown RBP13.34□□□□□ -0.27
HMGA1-202ENST00000347617 FDCSPQ8NFU4 85 aa13.34□□□□□ -0.27
HMGA1-202ENST00000347617 SFRP2Q96HF1 295 aa13.34□□□□□ -0.27
HMGA1-202ENST00000347617 TMEM204Q9BSN7 226 aa13.34□□□□□ -0.27
HMGA1-202ENST00000347617 PKIBQ9C010 78 aa13.34□□□□□ -0.27
HMGA1-202ENST00000347617 GP6Q9HCN6 339 aa13.34□□□□□ -0.27
HMGA1-202ENST00000347617 IRF2P14316 349 aa13.33□□□□□ -0.28
HMGA1-202ENST00000347617 NTF4P34130 210 aa13.33□□□□□ -0.28
HMGA1-202ENST00000347617 GPM6AP51674 278 aa13.33□□□□□ -0.28
HMGA1-202ENST00000347617 PRSS12P56730 875 aa13.33□□□□□ -0.28
HMGA1-202ENST00000347617 Q0VG73 95 aa13.33□□□□□ -0.28
HMGA1-202ENST00000347617 CLEC12BQ2HXU8 276 aa13.33□□□□□ -0.28
HMGA1-202ENST00000347617 COX19Q49B96 90 aa13.33□□□□□ -0.28
HMGA1-202ENST00000347617 ARSJQ5FYB0 599 aaPredicted RBP13.33□□□□□ -0.28
HMGA1-202ENST00000347617 TMEM256Q8N2U0 113 aa13.33□□□□□ -0.28
HMGA1-202ENST00000347617 APOBEC3DQ96AK3 386 aaPredicted RBP13.33□□□□□ -0.28
HMGA1-202ENST00000347617 SDSLQ96GA7 329 aa13.33□□□□□ -0.28
HMGA1-202ENST00000347617 NPCDR1Q9BY65 106 aa13.33□□□□□ -0.28
HMGA1-202ENST00000347617 CTNNBIP1Q9NSA3 81 aaPredicted RBP13.33□□□□□ -0.28
HMGA1-202ENST00000347617 ZFP30Q9Y2G7 519 aa13.33□□□□□ -0.28
HMGA1-202ENST00000347617 MUC6Q6W4X9 2439 aa13.33□□□□□ -0.28
HMGA1-202ENST00000347617 TRAV17A0A0B4J275 112 aa13.32□□□□□ -0.28
HMGA1-202ENST00000347617 IGLV2-14P01704 120 aa13.32□□□□□ -0.28
HMGA1-202ENST00000347617 KITLGP21583 273 aa13.32□□□□□ -0.28
HMGA1-202ENST00000347617 GCH1P30793 250 aa13.32□□□□□ -0.28
HMGA1-202ENST00000347617 ADMP35318 185 aa13.32□□□□□ -0.28
HMGA1-202ENST00000347617 FGFRL1Q8N441 504 aa13.32□□□□□ -0.28
HMGA1-202ENST00000347617 MPC1Q9Y5U8 109 aa13.32□□□□□ -0.28
HMGA1-202ENST00000347617 LY96Q9Y6Y9 160 aa13.32□□□□□ -0.28
HMGA1-202ENST00000347617 RTTNQ86VV8 2226 aa13.32□□□□□ -0.28
HMGA1-202ENST00000347617 CNOT1A5YKK6 2376 aaKnown RBP13.32□□□□□ -0.28
HMGA1-202ENST00000347617 RIF1Q5UIP0 2472 aaKnown RBP13.32□□□□□ -0.28
HMGA1-202ENST00000347617 TRGV5A0A0B4J1U4 118 aa13.32□□□□□ -0.28
HMGA1-202ENST00000347617 MPDU1O75352 247 aa13.32□□□□□ -0.28
HMGA1-202ENST00000347617 IGHG3P01860 377 aa13.32□□□□□ -0.28
HMGA1-202ENST00000347617 NPSP0C0P6 89 aa13.32□□□□□ -0.28
HMGA1-202ENST00000347617 IZUMO4Q1ZYL8 232 aa13.32□□□□□ -0.28
HMGA1-202ENST00000347617 CST9LP1Q5W188 147 aa13.32□□□□□ -0.28
HMGA1-202ENST00000347617 FAM58AQ8N1B3 248 aa13.32□□□□□ -0.28
HMGA1-202ENST00000347617 OR5AU1Q8NGC0 362 aa13.32□□□□□ -0.28
HMGA1-202ENST00000347617 SGMS2Q8NHU3 365 aa13.32□□□□□ -0.28
HMGA1-202ENST00000347617 ALKBH3Q96Q83 286 aaPredicted RBP13.32□□□□□ -0.28
HMGA1-202ENST00000347617 RBM7Q9Y580 266 aaKnown RBP13.32□□□□□ -0.28
HMGA1-202ENST00000347617 TRAV24A0A0B4J272 114 aa13.31□□□□□ -0.28
HMGA1-202ENST00000347617 PMS2P5A8MQ11 134 aa13.31□□□□□ -0.28
HMGA1-202ENST00000347617 MRPL33O75394 65 aaKnown RBP13.31□□□□□ -0.28
HMGA1-202ENST00000347617 P0C879 139 aa13.31□□□□□ -0.28
HMGA1-202ENST00000347617 PATE4P0C8F1 98 aa13.31□□□□□ -0.28
HMGA1-202ENST00000347617 CRISP2P16562 243 aa13.31□□□□□ -0.28
HMGA1-202ENST00000347617 GNB1P62873 340 aa13.31□□□□□ -0.28
HMGA1-202ENST00000347617 SRSF6Q13247 344 aaKnown RBP13.31□□□□□ -0.28
HMGA1-202ENST00000347617 ANKRD39Q53RE8 183 aa13.31□□□□□ -0.28
HMGA1-202ENST00000347617 IGFL3Q6UXB1 125 aa13.31□□□□□ -0.28
HMGA1-202ENST00000347617 OR10G8Q8NGN5 311 aa13.31□□□□□ -0.28
HMGA1-202ENST00000347617 OPN3Q9H1Y3 402 aaPredicted RBP13.31□□□□□ -0.28
HMGA1-202ENST00000347617 KCNS2Q9ULS6 477 aa13.31□□□□□ -0.28
HMGA1-202ENST00000347617 PPP1R3CQ9UQK1 317 aa13.31□□□□□ -0.28
HMGA1-202ENST00000347617 WIPI2Q9Y4P8 454 aa13.31□□□□□ -0.28
HMGA1-202ENST00000347617 LRRC30A6NM36 301 aa13.3□□□□□ -0.28
HMGA1-202ENST00000347617 SS18L1O75177 396 aaPredicted RBP13.3□□□□□ -0.28
HMGA1-202ENST00000347617 NPPCP23582 126 aa13.3□□□□□ -0.28
HMGA1-202ENST00000347617 GNG3P63215 75 aa13.3□□□□□ -0.28
HMGA1-202ENST00000347617 CATR1Q13166 79 aa13.3□□□□□ -0.28
HMGA1-202ENST00000347617 C20orf204Q6ZNR8 217 aa13.3□□□□□ -0.28
HMGA1-202ENST00000347617 Q6ZWC4 215 aa13.3□□□□□ -0.28
HMGA1-202ENST00000347617 ABHD3Q8WU67 409 aa13.3□□□□□ -0.28
HMGA1-202ENST00000347617 GATAD1Q8WUU5 269 aa13.3□□□□□ -0.28
HMGA1-202ENST00000347617 FGF23Q9GZV9 251 aaPredicted RBP13.3□□□□□ -0.28
HMGA1-202ENST00000347617 IL36BQ9NZH7 164 aa13.3□□□□□ -0.28
HMGA1-202ENST00000347617 C1QTNF9BB2RNN3 333 aa13.3□□□□□ -0.28
HMGA1-202ENST00000347617 RAB29O14966 203 aa13.3□□□□□ -0.28
HMGA1-202ENST00000347617 ZNF16P17020 682 aaPredicted RBP13.3□□□□□ -0.28
HMGA1-202ENST00000347617 DEFB109BQ30KR1 87 aa13.3□□□□□ -0.28
HMGA1-202ENST00000347617 CYB5R2Q6BCY4 276 aa13.3□□□□□ -0.28
HMGA1-202ENST00000347617 Q8IYB0 196 aa13.3□□□□□ -0.28
HMGA1-202ENST00000347617 OR1K1Q8NGR3 316 aa13.3□□□□□ -0.28
HMGA1-202ENST00000347617 FGFBP3Q8TAT2 258 aa13.3□□□□□ -0.28
HMGA1-202ENST00000347617 RNF2Q99496 336 aa13.3□□□□□ -0.28
HMGA1-202ENST00000347617 MSL2Q9HCI7 577 aa13.3□□□□□ -0.28
HMGA1-202ENST00000347617 AURKAIP1Q9NWT8 199 aaPredicted RBP13.3□□□□□ -0.28
HMGA1-202ENST00000347617 ZNF586Q9NXT0 402 aa13.3□□□□□ -0.28
HMGA1-202ENST00000347617 KCNIP1Q9NZI2 227 aa13.3□□□□□ -0.28
HMGA1-202ENST00000347617 ZFHX2Q9C0A1 2572 aaPredicted RBP13.29□□□□□ -0.28
HMGA1-202ENST00000347617 SAA2-SAA4A0A096LPE2 208 aa13.29□□□□□ -0.28
HMGA1-202ENST00000347617 A8MXE2 369 aa13.29□□□□□ -0.28
HMGA1-202ENST00000347617 HSPB6O14558 160 aa13.29□□□□□ -0.28
HMGA1-202ENST00000347617 MT-ND6P03923 174 aa13.29□□□□□ -0.28
HMGA1-202ENST00000347617 REG1AP05451 166 aa13.29□□□□□ -0.28
HMGA1-202ENST00000347617 PCP4P48539 62 aa13.29□□□□□ -0.28
HMGA1-202ENST00000347617 SRYQ05066 204 aa13.29□□□□□ -0.28
HMGA1-202ENST00000347617 PRSS8Q16651 343 aa13.29□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms