RNA–Protein interactions for RNA: ENST00000343916.7

COL9A3-201, Transcript of collagen type IX alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL9A3, Length 2,485 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-201ENST00000343916 IGKV1-33P01594 117 aa16.08■□□□□ 0.17
COL9A3-201ENST00000343916 ADH4P08319 380 aa16.08■□□□□ 0.17
COL9A3-201ENST00000343916 MAS1LP35410 378 aa16.08■□□□□ 0.17
COL9A3-201ENST00000343916 TAGLN2P37802 199 aaKnown RBP16.08■□□□□ 0.17
COL9A3-201ENST00000343916 NDUFA6P56556 154 aa16.08■□□□□ 0.17
COL9A3-201ENST00000343916 MORN2Q502X0 79 aa16.08■□□□□ 0.17
COL9A3-201ENST00000343916 KHDC3LQ587J8 217 aa16.08■□□□□ 0.17
COL9A3-201ENST00000343916 ZNF66Q6ZN08 573 aa16.08■□□□□ 0.17
COL9A3-201ENST00000343916 SSX9Q7RTT3 188 aa16.08■□□□□ 0.17
COL9A3-201ENST00000343916 HSD17B10Q99714 261 aaKnown RBP16.08■□□□□ 0.17
COL9A3-201ENST00000343916 IFITM10A6NMD0 228 aa16.08■□□□□ 0.16
COL9A3-201ENST00000343916 GLRXP35754 106 aa16.08■□□□□ 0.16
COL9A3-201ENST00000343916 GPR12P47775 334 aa16.08■□□□□ 0.16
COL9A3-201ENST00000343916 ZNF134P52741 427 aa16.08■□□□□ 0.16
COL9A3-201ENST00000343916 NKX6-1P78426 367 aaPredicted RBP16.08■□□□□ 0.16
COL9A3-201ENST00000343916 DLK1P80370 383 aa16.08■□□□□ 0.16
COL9A3-201ENST00000343916 SERF2P84101 59 aa16.08■□□□□ 0.16
COL9A3-201ENST00000343916 ASCL5Q7RTU5 278 aa16.08■□□□□ 0.16
COL9A3-201ENST00000343916 C1QL4Q86Z23 238 aa16.08■□□□□ 0.16
COL9A3-201ENST00000343916 PTPRZ1P23471 2315 aaPredicted RBP16.08■□□□□ 0.16
COL9A3-201ENST00000343916 ADGRG4Q8IZF6 3080 aa16.07■□□□□ 0.16
COL9A3-201ENST00000343916 HMGB3O15347 200 aaKnown RBP16.07■□□□□ 0.16
COL9A3-201ENST00000343916 FCGR3BO75015 233 aa16.07■□□□□ 0.16
COL9A3-201ENST00000343916 CXCL1P09341 107 aa16.07■□□□□ 0.16
COL9A3-201ENST00000343916 BMP5P22003 454 aa16.07■□□□□ 0.16
COL9A3-201ENST00000343916 RAB11AP62491 216 aa16.07■□□□□ 0.16
COL9A3-201ENST00000343916 RTP5Q14D33 572 aa16.07■□□□□ 0.16
COL9A3-201ENST00000343916 RPL39P5Q59GN2 51 aa16.07■□□□□ 0.16
COL9A3-201ENST00000343916 DUX4L9Q6RFH8 374 aaPredicted RBP16.07■□□□□ 0.16
COL9A3-201ENST00000343916 ROS1P08922 2347 aa16.07■□□□□ 0.16
COL9A3-201ENST00000343916 HCFC1P51610 2035 aa16.07■□□□□ 0.16
COL9A3-201ENST00000343916 PMS2P5A8MQ11 134 aa16.07■□□□□ 0.16
COL9A3-201ENST00000343916 RAB29O14966 203 aa16.07■□□□□ 0.16
COL9A3-201ENST00000343916 DUTP33316 252 aaKnown RBP16.07■□□□□ 0.16
COL9A3-201ENST00000343916 PAX5Q02548 391 aa16.07■□□□□ 0.16
COL9A3-201ENST00000343916 ZNF674Q2M3X9 581 aa16.07■□□□□ 0.16
COL9A3-201ENST00000343916 TMEM41BQ5BJD5 291 aa16.07■□□□□ 0.16
COL9A3-201ENST00000343916 VKORC1L1Q8N0U8 176 aa16.07■□□□□ 0.16
COL9A3-201ENST00000343916 Q8WTZ3 238 aa16.07■□□□□ 0.16
COL9A3-201ENST00000343916 LEAP2Q969E1 77 aa16.07■□□□□ 0.16
COL9A3-201ENST00000343916 SNX22Q96L94 193 aa16.07■□□□□ 0.16
COL9A3-201ENST00000343916 PIEZO2Q9H5I5 2752 aa16.06■□□□□ 0.16
COL9A3-201ENST00000343916 CEBPZOSA8MTT3 80 aa16.06■□□□□ 0.16
COL9A3-201ENST00000343916 MGST3O14880 152 aa16.06■□□□□ 0.16
COL9A3-201ENST00000343916 OR9G9P0C7N8 305 aa16.06■□□□□ 0.16
COL9A3-201ENST00000343916 BCL2P10415 239 aa16.06■□□□□ 0.16
COL9A3-201ENST00000343916 GZMHP20718 246 aa16.06■□□□□ 0.16
COL9A3-201ENST00000343916 TLE1Q04724 770 aa16.06■□□□□ 0.16
COL9A3-201ENST00000343916 CDPF1Q6NVV7 123 aa16.06■□□□□ 0.16
COL9A3-201ENST00000343916 RPP25LQ8N5L8 163 aaKnown RBP16.06■□□□□ 0.16
COL9A3-201ENST00000343916 MBD3L1Q8WWY6 194 aa16.06■□□□□ 0.16
COL9A3-201ENST00000343916 R3HDM4Q96D70 268 aa16.06■□□□□ 0.16
COL9A3-201ENST00000343916 NIPSNAP3BQ9BS92 247 aa16.06■□□□□ 0.16
COL9A3-201ENST00000343916 QTRT1Q9BXR0 403 aaKnown RBP16.06■□□□□ 0.16
COL9A3-201ENST00000343916 MRPL37Q9BZE1 423 aaKnown RBP16.06■□□□□ 0.16
COL9A3-201ENST00000343916 PCNX1Q96RV3 2341 aa16.06■□□□□ 0.16
COL9A3-201ENST00000343916 HOXA5P20719 270 aa16.06■□□□□ 0.16
COL9A3-201ENST00000343916 ACSM6Q6P461 480 aa16.06■□□□□ 0.16
COL9A3-201ENST00000343916 TRAT1Q6PIZ9 186 aa16.06■□□□□ 0.16
COL9A3-201ENST00000343916 MAP1LC3B2A6NCE7 125 aa16.05■□□□□ 0.16
COL9A3-201ENST00000343916 CFHR2P36980 270 aa16.05■□□□□ 0.16
COL9A3-201ENST00000343916 LOXL3P58215 753 aa16.05■□□□□ 0.16
COL9A3-201ENST00000343916 PYY3Q5JQD4 70 aa16.05■□□□□ 0.16
COL9A3-201ENST00000343916 C9orf152Q5JTZ5 239 aa16.05■□□□□ 0.16
COL9A3-201ENST00000343916 FAM90A1Q86YD7 464 aa16.05■□□□□ 0.16
COL9A3-201ENST00000343916 OR10P1Q8NGE3 313 aa16.05■□□□□ 0.16
COL9A3-201ENST00000343916 MAP1LC3BQ9GZQ8 125 aa16.05■□□□□ 0.16
COL9A3-201ENST00000343916 ZGRF1Q86YA3 2104 aa16.05■□□□□ 0.16
COL9A3-201ENST00000343916 M0R1X1 148 aa16.05■□□□□ 0.16
COL9A3-201ENST00000343916 LHBP01229 141 aa16.05■□□□□ 0.16
COL9A3-201ENST00000343916 TIMP3P35625 211 aa16.05■□□□□ 0.16
COL9A3-201ENST00000343916 ERVFRD-1P60508 538 aa16.05■□□□□ 0.16
COL9A3-201ENST00000343916 TFF3Q07654 80 aa16.05■□□□□ 0.16
COL9A3-201ENST00000343916 ELOBQ15370 118 aa16.05■□□□□ 0.16
COL9A3-201ENST00000343916 PARD6GQ9BYG4 376 aaPredicted RBP16.05■□□□□ 0.16
COL9A3-201ENST00000343916 DOK5Q9P104 306 aa16.05■□□□□ 0.16
COL9A3-201ENST00000343916 TGIF2-C20orf24A0A0A6YYL0 155 aa16.04■□□□□ 0.16
COL9A3-201ENST00000343916 SLC31A2O15432 143 aa16.04■□□□□ 0.16
COL9A3-201ENST00000343916 FAM90A2PQ658T7 463 aa16.04■□□□□ 0.16
COL9A3-201ENST00000343916 C1orf229Q6ZS94 237 aaPredicted RBP16.04■□□□□ 0.16
COL9A3-201ENST00000343916 Q8TCH9 128 aa16.04■□□□□ 0.16
COL9A3-201ENST00000343916 CISD1Q9NZ45 108 aaKnown RBP16.04■□□□□ 0.16
COL9A3-201ENST00000343916 JPT1Q9UK76 154 aa16.04■□□□□ 0.16
COL9A3-201ENST00000343916 LAMP3Q9UQV4 416 aa16.04■□□□□ 0.16
COL9A3-201ENST00000343916 APC2O95996 2303 aa16.04■□□□□ 0.16
COL9A3-201ENST00000343916 IGLV3-9A0A075B6K5 115 aa16.04■□□□□ 0.16
COL9A3-201ENST00000343916 DEFA4P12838 97 aa16.04■□□□□ 0.16
COL9A3-201ENST00000343916 FGF7P21781 194 aa16.04■□□□□ 0.16
COL9A3-201ENST00000343916 TCTEX1D1Q8N7M0 179 aa16.04■□□□□ 0.16
COL9A3-201ENST00000343916 DEFB108BQ8NET1 73 aa16.04■□□□□ 0.16
COL9A3-201ENST00000343916 PPP1R35Q8TAP8 253 aa16.04■□□□□ 0.16
COL9A3-201ENST00000343916 TVP23CQ96ET8 276 aa16.04■□□□□ 0.16
COL9A3-201ENST00000343916 SLC25A22Q9H936 323 aa16.04■□□□□ 0.16
COL9A3-201ENST00000343916 CDX1P47902 265 aaPredicted RBP16.03■□□□□ 0.16
COL9A3-201ENST00000343916 TGIF2LYQ8IUE0 185 aa16.03■□□□□ 0.16
COL9A3-201ENST00000343916 PINX1Q96BK5 328 aaKnown RBP16.03■□□□□ 0.16
COL9A3-201ENST00000343916 TMEM147Q9BVK8 224 aa16.03■□□□□ 0.16
COL9A3-201ENST00000343916 IFI27L2Q9H2X8 130 aa16.03■□□□□ 0.16
COL9A3-201ENST00000343916 YPEL1O60688 119 aa16.03■□□□□ 0.16
COL9A3-201ENST00000343916 CYB5R3P00387 301 aaPredicted RBP16.03■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms