RNA–Protein interactions for RNA: ENST00000339859.8

USP54-201, Transcript of ubiquitin specific peptidase 54, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP54, Length 6,247 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-201ENST00000339859 HLA-DQB1P01920 261 aa8.51□□□□□ -1.05
USP54-201ENST00000339859 COL8A2P25067 703 aa8.51□□□□□ -1.05
USP54-201ENST00000339859 ATP5IP56385 69 aaPredicted RBP8.51□□□□□ -1.05
USP54-201ENST00000339859 RAB5BP61020 215 aa8.51□□□□□ -1.05
USP54-201ENST00000339859 ZNF362Q5T0B9 420 aaPredicted RBP8.51□□□□□ -1.05
USP54-201ENST00000339859 HCP5Q6MZN7 132 aa8.51□□□□□ -1.05
USP54-201ENST00000339859 H1FOOQ8IZA3 346 aaPredicted RBP8.51□□□□□ -1.05
USP54-201ENST00000339859 TCTE3Q8IZS6 198 aa8.51□□□□□ -1.05
USP54-201ENST00000339859 SVBPQ8N300 66 aa8.51□□□□□ -1.05
USP54-201ENST00000339859 MARVELD1Q9BSK0 173 aa8.51□□□□□ -1.05
USP54-201ENST00000339859 MARCH11A6NNE9 402 aa8.5□□□□□ -1.05
USP54-201ENST00000339859 OOSP1A8MZH6 123 aa8.5□□□□□ -1.05
USP54-201ENST00000339859 PLAUP00749 431 aa8.5□□□□□ -1.05
USP54-201ENST00000339859 MT-ND4LP03901 98 aa8.5□□□□□ -1.05
USP54-201ENST00000339859 WNT2P09544 360 aa8.5□□□□□ -1.05
USP54-201ENST00000339859 UBE2L3P68036 154 aaKnown RBP8.5□□□□□ -1.05
USP54-201ENST00000339859 J3QRE1 110 aa8.5□□□□□ -1.05
USP54-201ENST00000339859 TOR2AQ5JU69 321 aa8.5□□□□□ -1.05
USP54-201ENST00000339859 SSX7Q7RTT5 188 aa8.5□□□□□ -1.05
USP54-201ENST00000339859 PLPPR1Q8TBJ4 325 aa8.5□□□□□ -1.05
USP54-201ENST00000339859 MITD1Q8WV92 249 aa8.5□□□□□ -1.05
USP54-201ENST00000339859 MRPL20Q9BYC9 149 aaKnown RBP8.5□□□□□ -1.05
USP54-201ENST00000339859 PEMTQ9UBM1 199 aa8.5□□□□□ -1.05
USP54-201ENST00000339859 NBR2O15453 112 aa8.5□□□□□ -1.05
USP54-201ENST00000339859 KBTBD11O94819 623 aa8.5□□□□□ -1.05
USP54-201ENST00000339859 UNC119Q13432 240 aa8.5□□□□□ -1.05
USP54-201ENST00000339859 BTNL8Q6UX41 500 aa8.5□□□□□ -1.05
USP54-201ENST00000339859 RBKSQ9H477 322 aa8.5□□□□□ -1.05
USP54-201ENST00000339859 J3QLI3 93 aa8.5□□□□□ -1.05
USP54-201ENST00000339859 HYPMO75409 117 aa8.5□□□□□ -1.05
USP54-201ENST00000339859 FGFRL1Q8N441 504 aa8.5□□□□□ -1.05
USP54-201ENST00000339859 ALX4Q9H161 411 aaPredicted RBP8.5□□□□□ -1.05
USP54-201ENST00000339859 ZNF331Q9NQX6 463 aaPredicted RBP8.5□□□□□ -1.05
USP54-201ENST00000339859 SMCO4Q9NRQ5 59 aa8.5□□□□□ -1.05
USP54-201ENST00000339859 SEC16AO15027 2179 aa8.5□□□□□ -1.05
USP54-201ENST00000339859 CLN5O75503 358 aa8.5□□□□□ -1.05
USP54-201ENST00000339859 S1PR2O95136 353 aa8.5□□□□□ -1.05
USP54-201ENST00000339859 ZNF818PQ6ZRF7 136 aa8.5□□□□□ -1.05
USP54-201ENST00000339859 DUX5Q96PT3 197 aa8.5□□□□□ -1.05
USP54-201ENST00000339859 CABLES2Q9BTV7 478 aa8.5□□□□□ -1.05
USP54-201ENST00000339859 ZMAT5Q9UDW3 170 aaKnown RBP8.5□□□□□ -1.05
USP54-201ENST00000339859 TBL2Q9Y4P3 447 aaKnown RBP8.5□□□□□ -1.05
USP54-201ENST00000339859 SCN8AQ9UQD0 1980 aa8.5□□□□□ -1.05
USP54-201ENST00000339859 MSMBP08118 114 aa8.49□□□□□ -1.05
USP54-201ENST00000339859 PAX6P26367 422 aa8.49□□□□□ -1.05
USP54-201ENST00000339859 HGFACQ04756 655 aa8.49□□□□□ -1.05
USP54-201ENST00000339859 GPR132Q9UNW8 380 aa8.49□□□□□ -1.05
USP54-201ENST00000339859 MDC1Q14676 2089 aaKnown RBP8.49□□□□□ -1.05
USP54-201ENST00000339859 RAB9AP51151 201 aa8.49□□□□□ -1.05
USP54-201ENST00000339859 TMEM255AQ5JRV8 349 aa8.49□□□□□ -1.05
USP54-201ENST00000339859 CADM3Q8N126 398 aa8.49□□□□□ -1.05
USP54-201ENST00000339859 DMRTA2Q96SC8 542 aa8.49□□□□□ -1.05
USP54-201ENST00000339859 ZNF106Q9H2Y7 1883 aaKnown RBP8.49□□□□□ -1.05
USP54-201ENST00000339859 IGKV3-7A0A075B6H7 116 aa8.49□□□□□ -1.05
USP54-201ENST00000339859 SELENOTP62341 195 aa8.49□□□□□ -1.05
USP54-201ENST00000339859 OR4D10Q8NGI6 311 aa8.49□□□□□ -1.05
USP54-201ENST00000339859 MOB4Q9Y3A3 225 aa8.49□□□□□ -1.05
USP54-201ENST00000339859 TCRBV4S1A1TA0A5B7 111 aa8.49□□□□□ -1.05
USP54-201ENST00000339859 CHEK1O14757 476 aa8.49□□□□□ -1.05
USP54-201ENST00000339859 NPVFQ9HCQ7 196 aa8.49□□□□□ -1.05
USP54-201ENST00000339859 PLSCR2Q9NRY7 297 aa8.49□□□□□ -1.05
USP54-201ENST00000339859 CLEC5AQ9NY25 188 aa8.49□□□□□ -1.05
USP54-201ENST00000339859 SERTM2A0A1B0GWG4 89 aa8.49□□□□□ -1.05
USP54-201ENST00000339859 FBXL15Q9H469 300 aa8.49□□□□□ -1.05
USP54-201ENST00000339859 LRRK1Q38SD2 2015 aa8.49□□□□□ -1.05
USP54-201ENST00000339859 GAFA1Q96PS6 74 aa8.48□□□□□ -1.05
USP54-201ENST00000339859 ZNF430Q9H8G1 570 aaPredicted RBP8.48□□□□□ -1.05
USP54-201ENST00000339859 NAGKQ9UJ70 344 aa8.48□□□□□ -1.05
USP54-201ENST00000339859 S100A8P05109 93 aa8.48□□□□□ -1.05
USP54-201ENST00000339859 TDGF1P3P51864 188 aa8.48□□□□□ -1.05
USP54-201ENST00000339859 ZP1P60852 638 aa8.48□□□□□ -1.05
USP54-201ENST00000339859 TMEM41BQ5BJD5 291 aa8.48□□□□□ -1.05
USP54-201ENST00000339859 TMEM200BQ69YZ2 307 aa8.48□□□□□ -1.05
USP54-201ENST00000339859 TRAF4Q9BUZ4 470 aaPredicted RBP8.48□□□□□ -1.05
USP54-201ENST00000339859 ZNF319Q9P2F9 582 aa8.48□□□□□ -1.05
USP54-201ENST00000339859 IL36RNQ9UBH0 155 aa8.48□□□□□ -1.05
USP54-201ENST00000339859 IGHV2-26A0A0B4J1V2 119 aa8.48□□□□□ -1.05
USP54-201ENST00000339859 MAP1LC3B2A6NCE7 125 aa8.48□□□□□ -1.05
USP54-201ENST00000339859 DKK1O94907 266 aa8.48□□□□□ -1.05
USP54-201ENST00000339859 EWSR1Q01844 656 aaKnown RBP eCLIP8.48□□□□□ -1.05
USP54-201ENST00000339859 Q8TCH9 128 aa8.48□□□□□ -1.05
USP54-201ENST00000339859 MAP1LC3BQ9GZQ8 125 aa8.48□□□□□ -1.05
USP54-201ENST00000339859 WSB1Q9Y6I7 421 aa8.48□□□□□ -1.05
USP54-201ENST00000339859 NPFFO15130 113 aa8.48□□□□□ -1.05
USP54-201ENST00000339859 PITX3O75364 302 aa8.48□□□□□ -1.05
USP54-201ENST00000339859 CD37P11049 281 aa8.48□□□□□ -1.05
USP54-201ENST00000339859 CTRB1P17538 263 aa8.48□□□□□ -1.05
USP54-201ENST00000339859 CTRB2Q6GPI1 263 aa8.48□□□□□ -1.05
USP54-201ENST00000339859 OVCH2Q7RTZ1 564 aa8.48□□□□□ -1.05
USP54-201ENST00000339859 C16orf92Q96LL3 132 aa8.48□□□□□ -1.05
USP54-201ENST00000339859 CD74P04233 296 aa8.48□□□□□ -1.05
USP54-201ENST00000339859 RD3LP0DJH9 198 aa8.48□□□□□ -1.05
USP54-201ENST00000339859 CD1BP29016 333 aa8.48□□□□□ -1.05
USP54-201ENST00000339859 PLAC9Q5JTB6 97 aa8.48□□□□□ -1.05
USP54-201ENST00000339859 LAIR2Q6ISS4 152 aa8.48□□□□□ -1.05
USP54-201ENST00000339859 COMMD1Q8N668 190 aa8.48□□□□□ -1.05
USP54-201ENST00000339859 MANBALQ9NQG1 85 aa8.48□□□□□ -1.05
USP54-201ENST00000339859 FBLN5Q9UBX5 448 aa8.48□□□□□ -1.05
USP54-201ENST00000339859 FBXL17Q9UF56 701 aa8.48□□□□□ -1.05
USP54-201ENST00000339859 TRAV24A0A0B4J272 114 aa8.47□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 54.4 ms