RNA–Protein interactions for RNA: ENST00000317968.8

PDLIM5-201, Transcript of PDZ and LIM domain 5, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene PDLIM5, Length 6,083 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-201ENST00000317968 VSIG4Q9Y279 399 aa7.2□□□□□ -1.26
PDLIM5-201ENST00000317968 SNRPD3P62318 126 aaKnown RBP7.19□□□□□ -1.26
PDLIM5-201ENST00000317968 TMUB2Q71RG4 321 aa7.19□□□□□ -1.26
PDLIM5-201ENST00000317968 UBALD1Q8TB05 177 aa7.19□□□□□ -1.26
PDLIM5-201ENST00000317968 SCARB1Q8WTV0 552 aa7.19□□□□□ -1.26
PDLIM5-201ENST00000317968 Q96MF0 132 aa7.19□□□□□ -1.26
PDLIM5-201ENST00000317968 CABLES2Q9BTV7 478 aa7.19□□□□□ -1.26
PDLIM5-201ENST00000317968 IGKV1-12A0A0C4DH73 117 aa7.19□□□□□ -1.26
PDLIM5-201ENST00000317968 IGKV1D-12P01611 117 aa7.19□□□□□ -1.26
PDLIM5-201ENST00000317968 HBZP02008 142 aa7.19□□□□□ -1.26
PDLIM5-201ENST00000317968 LMO1P25800 156 aa7.19□□□□□ -1.26
PDLIM5-201ENST00000317968 TMEM255AQ5JRV8 349 aa7.19□□□□□ -1.26
PDLIM5-201ENST00000317968 OR8I2Q8N0Y5 310 aa7.19□□□□□ -1.26
PDLIM5-201ENST00000317968 CD33P20138 364 aa7.19□□□□□ -1.26
PDLIM5-201ENST00000317968 RAB4AP20338 218 aa7.19□□□□□ -1.26
PDLIM5-201ENST00000317968 RNF141Q8WVD5 230 aa7.19□□□□□ -1.26
PDLIM5-201ENST00000317968 DDB2Q92466 427 aa7.19□□□□□ -1.26
PDLIM5-201ENST00000317968 TMEM222Q9H0R3 208 aa7.19□□□□□ -1.26
PDLIM5-201ENST00000317968 OR1A1Q9P1Q5 309 aa7.19□□□□□ -1.26
PDLIM5-201ENST00000317968 TRBV6-7A0A0A0MS04 114 aa7.19□□□□□ -1.26
PDLIM5-201ENST00000317968 HPXP02790 462 aa7.19□□□□□ -1.26
PDLIM5-201ENST00000317968 PI3P19957 117 aa7.19□□□□□ -1.26
PDLIM5-201ENST00000317968 ERVS71-1P61550 626 aa7.19□□□□□ -1.26
PDLIM5-201ENST00000317968 MIDNQ504T8 468 aa7.19□□□□□ -1.26
PDLIM5-201ENST00000317968 TBC1D26Q86UD7 250 aa7.19□□□□□ -1.26
PDLIM5-201ENST00000317968 LINC00312Q9Y6C7 94 aa7.19□□□□□ -1.26
PDLIM5-201ENST00000317968 ITGB1BP1O14713 200 aa7.19□□□□□ -1.26
PDLIM5-201ENST00000317968 SPDEFO95238 335 aa7.19□□□□□ -1.26
PDLIM5-201ENST00000317968 MPC2O95563 127 aa7.19□□□□□ -1.26
PDLIM5-201ENST00000317968 RPL12P30050 165 aaKnown RBP7.19□□□□□ -1.26
PDLIM5-201ENST00000317968 EXOSC2Q13868 293 aaKnown RBP7.19□□□□□ -1.26
PDLIM5-201ENST00000317968 ZNF826PQ6ZT77 177 aa7.19□□□□□ -1.26
PDLIM5-201ENST00000317968 LHFPL1Q86WI0 220 aa7.19□□□□□ -1.26
PDLIM5-201ENST00000317968 LINC00052Q96N35 136 aa7.19□□□□□ -1.26
PDLIM5-201ENST00000317968 MCRIP2Q9BUT9 160 aaKnown RBP7.19□□□□□ -1.26
PDLIM5-201ENST00000317968 GSX2Q9BZM3 304 aa7.19□□□□□ -1.26
PDLIM5-201ENST00000317968 PRORYQ9H606 182 aa7.19□□□□□ -1.26
PDLIM5-201ENST00000317968 PHF3Q92576 2039 aaKnown RBP7.19□□□□□ -1.26
PDLIM5-201ENST00000317968 BCL2L11O43521 198 aa7.18□□□□□ -1.26
PDLIM5-201ENST00000317968 TCF21O43680 179 aa7.18□□□□□ -1.26
PDLIM5-201ENST00000317968 S1PR2O95136 353 aa7.18□□□□□ -1.26
PDLIM5-201ENST00000317968 IGHV1-46P01743 117 aa7.18□□□□□ -1.26
PDLIM5-201ENST00000317968 OR5AC1P0C628 307 aa7.18□□□□□ -1.26
PDLIM5-201ENST00000317968 PSG2P11465 335 aa7.18□□□□□ -1.26
PDLIM5-201ENST00000317968 RPL7L1Q6DKI1 246 aaKnown RBP7.18□□□□□ -1.26
PDLIM5-201ENST00000317968 ZNF497Q6ZNH5 498 aa7.18□□□□□ -1.26
PDLIM5-201ENST00000317968 WFDC3Q8IUB2 231 aa7.18□□□□□ -1.26
PDLIM5-201ENST00000317968 WDFY1Q8IWB7 410 aa7.18□□□□□ -1.26
PDLIM5-201ENST00000317968 GAPTQ8N292 157 aa7.18□□□□□ -1.26
PDLIM5-201ENST00000317968 ZNF645Q8N7E2 425 aa7.18□□□□□ -1.26
PDLIM5-201ENST00000317968 OR10J6PQ8NGY7 276 aa7.18□□□□□ -1.26
PDLIM5-201ENST00000317968 LSM10Q969L4 123 aaKnown RBP7.18□□□□□ -1.26
PDLIM5-201ENST00000317968 TLNRD1Q9H1K6 362 aa7.18□□□□□ -1.26
PDLIM5-201ENST00000317968 IGKV1-27A0A075B6S5 117 aa7.18□□□□□ -1.26
PDLIM5-201ENST00000317968 OOSP1A8MZH6 123 aa7.18□□□□□ -1.26
PDLIM5-201ENST00000317968 MYOD1P15172 320 aa7.18□□□□□ -1.26
PDLIM5-201ENST00000317968 P2RY1P47900 373 aa7.18□□□□□ -1.26
PDLIM5-201ENST00000317968 FAM162BQ5T6X4 162 aa7.18□□□□□ -1.26
PDLIM5-201ENST00000317968 H1FOOQ8IZA3 346 aaPredicted RBP7.18□□□□□ -1.26
PDLIM5-201ENST00000317968 BVESQ8NE79 360 aa7.18□□□□□ -1.26
PDLIM5-201ENST00000317968 MRPL30Q8TCC3 161 aaKnown RBP7.18□□□□□ -1.26
PDLIM5-201ENST00000317968 SPOCK3Q9BQ16 436 aa7.18□□□□□ -1.26
PDLIM5-201ENST00000317968 RTTNQ86VV8 2226 aa7.18□□□□□ -1.26
PDLIM5-201ENST00000317968 DPRXA6NFQ7 191 aa7.18□□□□□ -1.26
PDLIM5-201ENST00000317968 SIGLEC5O15389 551 aa7.18□□□□□ -1.26
PDLIM5-201ENST00000317968 SIX6O95475 246 aa7.18□□□□□ -1.26
PDLIM5-201ENST00000317968 REG1BP48304 166 aa7.18□□□□□ -1.26
PDLIM5-201ENST00000317968 OR1B1Q8NGR6 318 aa7.18□□□□□ -1.26
PDLIM5-201ENST00000317968 TNFRSF14Q92956 283 aa7.18□□□□□ -1.26
PDLIM5-201ENST00000317968 SLC25A32Q9H2D1 315 aa7.18□□□□□ -1.26
PDLIM5-201ENST00000317968 RCL1Q9Y2P8 373 aaKnown RBP7.18□□□□□ -1.26
PDLIM5-201ENST00000317968 AP1S3Q96PC3 154 aa7.18□□□□□ -1.26
PDLIM5-201ENST00000317968 CCL28Q9NRJ3 127 aa7.18□□□□□ -1.26
PDLIM5-201ENST00000317968 CHEK1O14757 476 aa7.18□□□□□ -1.26
PDLIM5-201ENST00000317968 IGHV3-7P01780 117 aa7.18□□□□□ -1.26
PDLIM5-201ENST00000317968 TRGV3P03979 118 aa7.18□□□□□ -1.26
PDLIM5-201ENST00000317968 WNT2P09544 360 aa7.18□□□□□ -1.26
PDLIM5-201ENST00000317968 ERVK11-1P61568 191 aa7.18□□□□□ -1.26
PDLIM5-201ENST00000317968 Q8NA96 180 aa7.18□□□□□ -1.26
PDLIM5-201ENST00000317968 ADAD2Q8NCV1 583 aaKnown RBP7.18□□□□□ -1.26
PDLIM5-201ENST00000317968 OR52B4Q8NGK2 314 aa7.18□□□□□ -1.26
PDLIM5-201ENST00000317968 FRZBQ92765 325 aa7.18□□□□□ -1.26
PDLIM5-201ENST00000317968 CXorf58Q96LI9 332 aa7.18□□□□□ -1.26
PDLIM5-201ENST00000317968 HDHD3Q9BSH5 251 aaPredicted RBP7.18□□□□□ -1.26
PDLIM5-201ENST00000317968 ZNF331Q9NQX6 463 aaPredicted RBP7.18□□□□□ -1.26
PDLIM5-201ENST00000317968 J3QR06 171 aa7.17□□□□□ -1.26
PDLIM5-201ENST00000317968 NCCRP1Q6ZVX7 275 aaPredicted RBP7.17□□□□□ -1.26
PDLIM5-201ENST00000317968 C16orf82Q7Z2V1 217 aa7.17□□□□□ -1.26
PDLIM5-201ENST00000317968 SSMEM1Q8WWF3 244 aa7.17□□□□□ -1.26
PDLIM5-201ENST00000317968 RBFOX2O43251 390 aaKnown RBP eCLIP7.17□□□□□ -1.26
PDLIM5-201ENST00000317968 YPEL1O60688 119 aa7.17□□□□□ -1.26
PDLIM5-201ENST00000317968 FBXO24O75426 580 aa7.17□□□□□ -1.26
PDLIM5-201ENST00000317968 MOSP00540 346 aa7.17□□□□□ -1.26
PDLIM5-201ENST00000317968 ZNF735P0CB33 412 aa7.17□□□□□ -1.26
PDLIM5-201ENST00000317968 RPL8P62917 257 aaKnown RBP7.17□□□□□ -1.26
PDLIM5-201ENST00000317968 TM4SF20Q53R12 229 aa7.17□□□□□ -1.26
PDLIM5-201ENST00000317968 BAP18Q8IXM2 172 aa7.17□□□□□ -1.26
PDLIM5-201ENST00000317968 LRTM2Q8N967 370 aa7.17□□□□□ -1.26
PDLIM5-201ENST00000317968 WDR89Q96FK6 387 aaPredicted RBP7.17□□□□□ -1.26
PDLIM5-201ENST00000317968 YPEL2Q96QA6 119 aa7.17□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms