RNA–Protein interactions for RNA: ENST00000265560.8

USP4-201, Transcript of ubiquitin specific peptidase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP4, Length 3,126 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-201ENST00000265560 CT45A6P0DMU7 189 aa13.47□□□□□ -0.25
USP4-201ENST00000265560 CT45A5P0DMU8 189 aa13.47□□□□□ -0.25
USP4-201ENST00000265560 CT45A7P0DMV0 189 aa13.47□□□□□ -0.25
USP4-201ENST00000265560 RAB7AP51149 207 aa13.47□□□□□ -0.25
USP4-201ENST00000265560 DLX6P56179 175 aa13.47□□□□□ -0.25
USP4-201ENST00000265560 EWSR1Q01844 656 aaKnown RBP eCLIP13.47□□□□□ -0.25
USP4-201ENST00000265560 ABHD12Q8N2K0 398 aa13.47□□□□□ -0.25
USP4-201ENST00000265560 OR8B3Q8NGG8 313 aa13.47□□□□□ -0.25
USP4-201ENST00000265560 SCARB1Q8WTV0 552 aa13.47□□□□□ -0.25
USP4-201ENST00000265560 LSM10Q969L4 123 aaKnown RBP13.47□□□□□ -0.25
USP4-201ENST00000265560 OR8B2Q96RD0 313 aa13.47□□□□□ -0.25
USP4-201ENST00000265560 MRPL20Q9BYC9 149 aaKnown RBP13.47□□□□□ -0.25
USP4-201ENST00000265560 DUXBA0A1W2PPF3 345 aa13.47□□□□□ -0.25
USP4-201ENST00000265560 CLEC18AA5D8T8 446 aa13.47□□□□□ -0.25
USP4-201ENST00000265560 TXNL1O43396 289 aa13.47□□□□□ -0.25
USP4-201ENST00000265560 OPN1MWP04001 364 aa13.47□□□□□ -0.25
USP4-201ENST00000265560 OPN1MW2P0DN77 364 aa13.47□□□□□ -0.25
USP4-201ENST00000265560 OPN1MW3P0DN78 364 aa13.47□□□□□ -0.25
USP4-201ENST00000265560 IGHV1-8P0DP01 117 aa13.47□□□□□ -0.25
USP4-201ENST00000265560 CLEC18CQ8NCF0 446 aa13.47□□□□□ -0.25
USP4-201ENST00000265560 NEU4Q8WWR8 484 aaPredicted RBP13.47□□□□□ -0.25
USP4-201ENST00000265560 LINC00574Q9H8X3 128 aa13.47□□□□□ -0.25
USP4-201ENST00000265560 NMBP08949 121 aa13.46□□□□□ -0.25
USP4-201ENST00000265560 GNB2P62879 340 aa13.46□□□□□ -0.25
USP4-201ENST00000265560 SPANXN5Q5MJ07 72 aa13.46□□□□□ -0.25
USP4-201ENST00000265560 TMEM252Q8N6L7 170 aa13.46□□□□□ -0.25
USP4-201ENST00000265560 CHODLQ9H9P2 273 aa13.46□□□□□ -0.25
USP4-201ENST00000265560 TLN2Q9Y4G6 2542 aa13.46□□□□□ -0.25
USP4-201ENST00000265560 H7C2Y5 167 aa13.46□□□□□ -0.25
USP4-201ENST00000265560 SYNGR2O43760 224 aa13.46□□□□□ -0.25
USP4-201ENST00000265560 METTL15P1P0C7V9 234 aa13.46□□□□□ -0.25
USP4-201ENST00000265560 GPR6P46095 362 aaPredicted RBP13.46□□□□□ -0.25
USP4-201ENST00000265560 UBA52P62987 128 aaKnown RBP13.46□□□□□ -0.25
USP4-201ENST00000265560 BAP18Q8IXM2 172 aa13.46□□□□□ -0.25
USP4-201ENST00000265560 HSD17B11Q8NBQ5 300 aa13.46□□□□□ -0.25
USP4-201ENST00000265560 NEIL1Q96FI4 390 aaPredicted RBP13.46□□□□□ -0.25
USP4-201ENST00000265560 C11orf1Q9H5F2 150 aa13.46□□□□□ -0.25
USP4-201ENST00000265560 LPAR2Q9HBW0 351 aa13.46□□□□□ -0.25
USP4-201ENST00000265560 PRELID3BQ9Y3B1 194 aa13.46□□□□□ -0.25
USP4-201ENST00000265560 PVALBP20472 110 aaPredicted RBP13.46□□□□□ -0.26
USP4-201ENST00000265560 QTRT1Q9BXR0 403 aaKnown RBP13.46□□□□□ -0.26
USP4-201ENST00000265560 RAB9BQ9NP90 201 aa13.46□□□□□ -0.26
USP4-201ENST00000265560 FASNP49327 2511 aaKnown RBP13.46□□□□□ -0.26
USP4-201ENST00000265560 J3QR06 171 aa13.45□□□□□ -0.26
USP4-201ENST00000265560 B3GALNT1O75752 331 aa13.45□□□□□ -0.26
USP4-201ENST00000265560 P2RY1P47900 373 aa13.45□□□□□ -0.26
USP4-201ENST00000265560 OR5C1Q8NGR4 320 aa13.45□□□□□ -0.26
USP4-201ENST00000265560 PLEKHA2Q9HB19 425 aa13.45□□□□□ -0.26
USP4-201ENST00000265560 APCP25054 2843 aa13.45□□□□□ -0.26
USP4-201ENST00000265560 GPR137BO60478 399 aa13.45□□□□□ -0.26
USP4-201ENST00000265560 DDB2Q92466 427 aa13.45□□□□□ -0.26
USP4-201ENST00000265560 BPESC1Q9GZL8 116 aa13.45□□□□□ -0.26
USP4-201ENST00000265560 SRRM4A7MD48 611 aaKnown RBP13.44□□□□□ -0.26
USP4-201ENST00000265560 TPT1P13693 172 aaKnown RBP13.44□□□□□ -0.26
USP4-201ENST00000265560 UBE2KP61086 200 aa13.44□□□□□ -0.26
USP4-201ENST00000265560 NDUFA5Q16718 116 aa13.44□□□□□ -0.26
USP4-201ENST00000265560 RHOVQ96L33 236 aa13.44□□□□□ -0.26
USP4-201ENST00000265560 SH3BGRL3Q9H299 93 aa13.44□□□□□ -0.26
USP4-201ENST00000265560 RBKSQ9H477 322 aa13.44□□□□□ -0.26
USP4-201ENST00000265560 LYRM2Q9NU23 88 aaPredicted RBP13.44□□□□□ -0.26
USP4-201ENST00000265560 ZFP36P26651 326 aaKnown RBP13.44□□□□□ -0.26
USP4-201ENST00000265560 DYNLT3P51808 116 aa13.44□□□□□ -0.26
USP4-201ENST00000265560 LCN2P80188 198 aa13.44□□□□□ -0.26
USP4-201ENST00000265560 MIDNQ504T8 468 aa13.44□□□□□ -0.26
USP4-201ENST00000265560 MIOXQ9UGB7 285 aa13.44□□□□□ -0.26
USP4-201ENST00000265560 HPRT1P00492 218 aa13.44□□□□□ -0.26
USP4-201ENST00000265560 IFNA17P01571 189 aa13.44□□□□□ -0.26
USP4-201ENST00000265560 TNFRSF9Q07011 255 aa13.44□□□□□ -0.26
USP4-201ENST00000265560 KLRD1Q13241 179 aa13.44□□□□□ -0.26
USP4-201ENST00000265560 PSENENQ9NZ42 101 aa13.44□□□□□ -0.26
USP4-201ENST00000265560 IGHV4-39P01824 125 aa13.43□□□□□ -0.26
USP4-201ENST00000265560 P0C879 139 aa13.43□□□□□ -0.26
USP4-201ENST00000265560 EFNA4P52798 201 aa13.43□□□□□ -0.26
USP4-201ENST00000265560 ARL16Q0P5N6 197 aa13.43□□□□□ -0.26
USP4-201ENST00000265560 CLLU1Q5K131 121 aa13.43□□□□□ -0.26
USP4-201ENST00000265560 PNKDQ8N490 385 aa13.43□□□□□ -0.26
USP4-201ENST00000265560 HINT2Q9BX68 163 aa13.43□□□□□ -0.26
USP4-201ENST00000265560 TMEM133Q9H2Q1 129 aa13.43□□□□□ -0.26
USP4-201ENST00000265560 CTNNBIP1Q9NSA3 81 aaPredicted RBP13.43□□□□□ -0.26
USP4-201ENST00000265560 TMEM140Q9NV12 185 aa13.43□□□□□ -0.26
USP4-201ENST00000265560 PLA2G2EQ9NZK7 142 aa13.43□□□□□ -0.26
USP4-201ENST00000265560 SNAPC5O75971 98 aa13.43□□□□□ -0.26
USP4-201ENST00000265560 OR8G2PQ6IF36 304 aa13.43□□□□□ -0.26
USP4-201ENST00000265560 RITA1Q96K30 269 aa13.43□□□□□ -0.26
USP4-201ENST00000265560 SSBP3Q9BWW4 388 aaPredicted RBP13.43□□□□□ -0.26
USP4-201ENST00000265560 SLC35D1Q9NTN3 355 aa13.43□□□□□ -0.26
USP4-201ENST00000265560 TOR1AO14656 332 aa13.42□□□□□ -0.26
USP4-201ENST00000265560 COMMD7Q86VX2 200 aa13.42□□□□□ -0.26
USP4-201ENST00000265560 PATZ1Q9HBE1 687 aaKnown RBP13.42□□□□□ -0.26
USP4-201ENST00000265560 ZFP57Q9NU63 452 aa13.42□□□□□ -0.26
USP4-201ENST00000265560 GCN1Q92616 2671 aaKnown RBP13.42□□□□□ -0.26
USP4-201ENST00000265560 LEUTXA8MZ59 168 aa13.42□□□□□ -0.26
USP4-201ENST00000265560 MSMO1Q15800 293 aa13.42□□□□□ -0.26
USP4-201ENST00000265560 MMP26Q9NRE1 261 aa13.42□□□□□ -0.26
USP4-201ENST00000265560 IGHV2-26A0A0B4J1V2 119 aa13.42□□□□□ -0.26
USP4-201ENST00000265560 CEBPZOSA8MTT3 80 aa13.42□□□□□ -0.26
USP4-201ENST00000265560 RUNX1Q01196 453 aa13.42□□□□□ -0.26
USP4-201ENST00000265560 ESCO2Q56NI9 601 aa13.42□□□□□ -0.26
USP4-201ENST00000265560 OR13D1Q8NGV5 346 aa13.42□□□□□ -0.26
USP4-201ENST00000265560 CD300LFQ8TDQ1 290 aa13.42□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms