RNA–Protein interactions for RNA: ENST00000637985.1

CLN3-264, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 764 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-264ENST00000637985 CEACAM6P40199 344 aa12.48□□□□□ -0.41
CLN3-264ENST00000637985 CLDN12P56749 244 aa12.48□□□□□ -0.41
CLN3-264ENST00000637985 PITPNAQ00169 270 aa12.48□□□□□ -0.41
CLN3-264ENST00000637985 SSX1Q16384 188 aa12.48□□□□□ -0.41
CLN3-264ENST00000637985 PTX4Q96A99 478 aa12.48□□□□□ -0.41
CLN3-264ENST00000637985 TOLLIPQ9H0E2 274 aa12.48□□□□□ -0.41
CLN3-264ENST00000637985 IGHV7-81A0A0B4J1V7 117 aa12.47□□□□□ -0.41
CLN3-264ENST00000637985 TMEM272A0A1B0GTI8 110 aa12.47□□□□□ -0.41
CLN3-264ENST00000637985 G3V318 75 aa12.47□□□□□ -0.41
CLN3-264ENST00000637985 MRPS14O60783 128 aaKnown RBP12.47□□□□□ -0.41
CLN3-264ENST00000637985 RBBP9O75884 186 aa12.47□□□□□ -0.41
CLN3-264ENST00000637985 SCTP09683 121 aa12.47□□□□□ -0.41
CLN3-264ENST00000637985 GALP22466 123 aa12.47□□□□□ -0.41
CLN3-264ENST00000637985 RPL39P5Q59GN2 51 aa12.47□□□□□ -0.41
CLN3-264ENST00000637985 PLAC9Q5JTB6 97 aa12.47□□□□□ -0.41
CLN3-264ENST00000637985 HES5Q5TA89 166 aa12.47□□□□□ -0.41
CLN3-264ENST00000637985 CD200R1LQ6Q8B3 271 aa12.47□□□□□ -0.41
CLN3-264ENST00000637985 FAM131AQ6UXB0 335 aa12.47□□□□□ -0.41
CLN3-264ENST00000637985 ABHD14BQ96IU4 210 aa12.47□□□□□ -0.41
CLN3-264ENST00000637985 RNF5Q99942 180 aa12.47□□□□□ -0.41
CLN3-264ENST00000637985 C11orf54Q9H0W9 315 aaPredicted RBP12.47□□□□□ -0.41
CLN3-264ENST00000637985 TUBA4BQ9H853 241 aa12.47□□□□□ -0.41
CLN3-264ENST00000637985 NDUFB11Q9NX14 153 aa12.47□□□□□ -0.41
CLN3-264ENST00000637985 IGHV4OR15-8A0A075B7B6 117 aa12.46□□□□□ -0.41
CLN3-264ENST00000637985 A0A087WW49 117 aa12.46□□□□□ -0.41
CLN3-264ENST00000637985 TRDV1A0A1B0GX56 115 aa12.46□□□□□ -0.41
CLN3-264ENST00000637985 TRDCB7Z8K6 153 aa12.46□□□□□ -0.41
CLN3-264ENST00000637985 H0YJW9 148 aa12.46□□□□□ -0.41
CLN3-264ENST00000637985 ATP6V0E1O15342 81 aa12.46□□□□□ -0.41
CLN3-264ENST00000637985 MYL9P24844 172 aa12.46□□□□□ -0.41
CLN3-264ENST00000637985 GABARAPL2P60520 117 aa12.46□□□□□ -0.41
CLN3-264ENST00000637985 ZNF660Q6AZW8 331 aaPredicted RBP12.46□□□□□ -0.41
CLN3-264ENST00000637985 LINC00322Q6ZN03 302 aaPredicted RBP12.46□□□□□ -0.41
CLN3-264ENST00000637985 OR5AN1Q8NGI8 311 aa12.46□□□□□ -0.41
CLN3-264ENST00000637985 PARP12Q9H0J9 701 aaKnown RBP12.46□□□□□ -0.41
CLN3-264ENST00000637985 PARP11Q9NR21 331 aa12.46□□□□□ -0.41
CLN3-264ENST00000637985 OR1A1Q9P1Q5 309 aa12.46□□□□□ -0.41
CLN3-264ENST00000637985 STUB1Q9UNE7 303 aa12.46□□□□□ -0.41
CLN3-264ENST00000637985 WASHC3Q9Y3C0 194 aa12.46□□□□□ -0.41
CLN3-264ENST00000637985 WSB1Q9Y6I7 421 aa12.46□□□□□ -0.41
CLN3-264ENST00000637985 TRAV41A0A0B4J266 112 aa12.45□□□□□ -0.42
CLN3-264ENST00000637985 IFITM5A6NNB3 132 aa12.45□□□□□ -0.42
CLN3-264ENST00000637985 RRHO14718 337 aa12.45□□□□□ -0.42
CLN3-264ENST00000637985 GSTP1P09211 210 aaKnown RBP12.45□□□□□ -0.42
CLN3-264ENST00000637985 SERPINB10P48595 397 aa12.45□□□□□ -0.42
CLN3-264ENST00000637985 CRIP2P52943 208 aaPredicted RBP12.45□□□□□ -0.42
CLN3-264ENST00000637985 MRPS15P82914 257 aaKnown RBP12.45□□□□□ -0.42
CLN3-264ENST00000637985 ANKRD13BQ86YJ7 626 aa12.45□□□□□ -0.42
CLN3-264ENST00000637985 OR4A4PQ8NGN8 299 aa12.45□□□□□ -0.42
CLN3-264ENST00000637985 RAB3CQ96E17 227 aa12.45□□□□□ -0.42
CLN3-264ENST00000637985 THAP7Q9BT49 309 aaPredicted RBP12.45□□□□□ -0.42
CLN3-264ENST00000637985 ST6GALNAC5Q9BVH7 336 aa12.45□□□□□ -0.42
CLN3-264ENST00000637985 H7C2Y5 167 aa12.44□□□□□ -0.42
CLN3-264ENST00000637985 DIRAS3O95661 229 aa12.44□□□□□ -0.42
CLN3-264ENST00000637985 LGALS1P09382 135 aaKnown RBP12.44□□□□□ -0.42
CLN3-264ENST00000637985 CD3GP09693 182 aa12.44□□□□□ -0.42
CLN3-264ENST00000637985 RAB3BP20337 219 aa12.44□□□□□ -0.42
CLN3-264ENST00000637985 RAB6AP20340 208 aa12.44□□□□□ -0.42
CLN3-264ENST00000637985 GADD45AP24522 165 aa12.44□□□□□ -0.42
CLN3-264ENST00000637985 GLDNQ6ZMI3 551 aaPredicted RBP12.44□□□□□ -0.42
CLN3-264ENST00000637985 TCTEX1D1Q8N7M0 179 aa12.44□□□□□ -0.42
CLN3-264ENST00000637985 MINDY2Q8NBR6 621 aa12.44□□□□□ -0.42
CLN3-264ENST00000637985 ELOVL1Q9BW60 279 aa12.44□□□□□ -0.42
CLN3-264ENST00000637985 FBXL15Q9H469 300 aa12.44□□□□□ -0.42
CLN3-264ENST00000637985 ZNF221Q9UK13 617 aa12.44□□□□□ -0.42
CLN3-264ENST00000637985 KCNK7Q9Y2U2 307 aa12.44□□□□□ -0.42
CLN3-264ENST00000637985 CEPT1Q9Y6K0 416 aa12.44□□□□□ -0.42
CLN3-264ENST00000637985 VPS13DQ5THJ4 4388 aa12.44□□□□□ -0.42
CLN3-264ENST00000637985 IGKV1-6A0A0C4DH72 117 aa12.43□□□□□ -0.42
CLN3-264ENST00000637985 SHISA3A0PJX4 238 aa12.43□□□□□ -0.42
CLN3-264ENST00000637985 PROP1O75360 226 aa12.43□□□□□ -0.42
CLN3-264ENST00000637985 BRI3O95415 125 aa12.43□□□□□ -0.42
CLN3-264ENST00000637985 ATP6V1G2O95670 118 aa12.43□□□□□ -0.42
CLN3-264ENST00000637985 OR10A3P58181 314 aa12.43□□□□□ -0.42
CLN3-264ENST00000637985 PLA2G7Q13093 441 aa12.43□□□□□ -0.42
CLN3-264ENST00000637985 PLGLAQ15195 96 aa12.43□□□□□ -0.42
CLN3-264ENST00000637985 ZNF436-AS1Q8NC38 126 aaPredicted RBP12.43□□□□□ -0.42
CLN3-264ENST00000637985 OR10R2Q8NGX6 335 aa12.43□□□□□ -0.42
CLN3-264ENST00000637985 CENPOQ9BU64 300 aa12.43□□□□□ -0.42
CLN3-264ENST00000637985 RDH8Q9NYR8 311 aa12.43□□□□□ -0.42
CLN3-264ENST00000637985 RNF150Q9ULK6 438 aa12.43□□□□□ -0.42
CLN3-264ENST00000637985 MUC4Q99102 2169 aa12.42□□□□□ -0.42
CLN3-264ENST00000637985 METTL21EPA6NDL7 271 aa12.42□□□□□ -0.42
CLN3-264ENST00000637985 RAB27BO00194 218 aa12.42□□□□□ -0.42
CLN3-264ENST00000637985 FABP7O15540 132 aa12.42□□□□□ -0.42
CLN3-264ENST00000637985 TFAP2AP05549 437 aa12.42□□□□□ -0.42
CLN3-264ENST00000637985 FCGR3AP08637 254 aa12.42□□□□□ -0.42
CLN3-264ENST00000637985 CX3CL1P78423 397 aa12.42□□□□□ -0.42
CLN3-264ENST00000637985 TMEM267Q0VDI3 215 aaPredicted RBP12.42□□□□□ -0.42
CLN3-264ENST00000637985 MOGAT2Q3SYC2 334 aa12.42□□□□□ -0.42
CLN3-264ENST00000637985 C19orf54Q5BKX5 351 aa12.42□□□□□ -0.42
CLN3-264ENST00000637985 UBE2UQ5VVX9 321 aa12.42□□□□□ -0.42
CLN3-264ENST00000637985 PDPNQ86YL7 162 aa12.42□□□□□ -0.42
CLN3-264ENST00000637985 FLYWCH2Q96CP2 140 aaKnown RBP12.42□□□□□ -0.42
CLN3-264ENST00000637985 TSNAXQ99598 290 aaKnown RBP12.42□□□□□ -0.42
CLN3-264ENST00000637985 RSRP1Q9BUV0 290 aa12.42□□□□□ -0.42
CLN3-264ENST00000637985 YTHDF1Q9BYJ9 559 aaKnown RBP12.42□□□□□ -0.42
CLN3-264ENST00000637985 Q9H521 79 aa12.42□□□□□ -0.42
CLN3-264ENST00000637985 GAB2Q9UQC2 676 aa12.42□□□□□ -0.42
CLN3-264ENST00000637985 MFNGO00587 321 aa12.41□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 48.6 ms