RNA–Protein interactions for RNA: ENST00000600733.5

SHKBP1-225, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5 BASIC

Gene SHKBP1, Length 2,284 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-225ENST00000600733 LINC00473A8K010 186 aa16.91■□□□□ 0.3
SHKBP1-225ENST00000600733 RBMXL2O75526 392 aaKnown RBP16.91■□□□□ 0.3
SHKBP1-225ENST00000600733 RD3LP0DJH9 198 aa16.91■□□□□ 0.3
SHKBP1-225ENST00000600733 FGF7P21781 194 aa16.91■□□□□ 0.3
SHKBP1-225ENST00000600733 FABP6P51161 128 aa16.91■□□□□ 0.3
SHKBP1-225ENST00000600733 NKX6-1P78426 367 aaPredicted RBP16.91■□□□□ 0.3
SHKBP1-225ENST00000600733 ADIRFQ15847 76 aa16.91■□□□□ 0.3
SHKBP1-225ENST00000600733 CENPVQ7Z7K6 275 aaPredicted RBP16.91■□□□□ 0.3
SHKBP1-225ENST00000600733 GATAD1Q8WUU5 269 aa16.91■□□□□ 0.3
SHKBP1-225ENST00000600733 TMEM147Q9BVK8 224 aa16.91■□□□□ 0.3
SHKBP1-225ENST00000600733 TRBV23-1A0A0A0MS06 115 aa16.9■□□□□ 0.3
SHKBP1-225ENST00000600733 TIMM8AO60220 97 aaPredicted RBP16.9■□□□□ 0.3
SHKBP1-225ENST00000600733 IGKV3-15P01624 115 aa16.9■□□□□ 0.3
SHKBP1-225ENST00000600733 DEFA4P12838 97 aa16.9■□□□□ 0.3
SHKBP1-225ENST00000600733 MDKP21741 143 aaPredicted RBP16.9■□□□□ 0.3
SHKBP1-225ENST00000600733 COL10A1Q03692 680 aa16.9■□□□□ 0.3
SHKBP1-225ENST00000600733 RPUSD4Q96CM3 377 aaKnown RBP16.9■□□□□ 0.3
SHKBP1-225ENST00000600733 DCTN5Q9BTE1 182 aa16.9■□□□□ 0.3
SHKBP1-225ENST00000600733 GPR61Q9BZJ8 451 aa16.9■□□□□ 0.3
SHKBP1-225ENST00000600733 CXXC4Q9H2H0 198 aa16.9■□□□□ 0.3
SHKBP1-225ENST00000600733 ST8SIA5O15466 376 aa16.9■□□□□ 0.3
SHKBP1-225ENST00000600733 Q3ZCU0 254 aa16.9■□□□□ 0.3
SHKBP1-225ENST00000600733 H2BFWTQ7Z2G1 175 aa16.9■□□□□ 0.3
SHKBP1-225ENST00000600733 WDR31Q8NA23 367 aa16.9■□□□□ 0.3
SHKBP1-225ENST00000600733 OR10P1Q8NGE3 313 aa16.9■□□□□ 0.3
SHKBP1-225ENST00000600733 OR10G9Q8NGN4 311 aa16.9■□□□□ 0.3
SHKBP1-225ENST00000600733 OR10G7Q8NGN6 311 aa16.9■□□□□ 0.3
SHKBP1-225ENST00000600733 CLDN14O95500 239 aa16.89■□□□□ 0.29
SHKBP1-225ENST00000600733 HOXC12P31275 282 aa16.89■□□□□ 0.29
SHKBP1-225ENST00000600733 SRSF6Q13247 344 aaKnown RBP16.89■□□□□ 0.29
SHKBP1-225ENST00000600733 FFAR4Q5NUL3 377 aa16.89■□□□□ 0.29
SHKBP1-225ENST00000600733 PSG11Q9UQ72 335 aa16.89■□□□□ 0.29
SHKBP1-225ENST00000600733 PPP1R2P9O14990 202 aa16.89■□□□□ 0.29
SHKBP1-225ENST00000600733 KIR2DL2P43627 348 aaPredicted RBP16.89■□□□□ 0.29
SHKBP1-225ENST00000600733 GUSBP1Q15486 140 aa16.89■□□□□ 0.29
SHKBP1-225ENST00000600733 LTC4SQ16873 150 aa16.89■□□□□ 0.29
SHKBP1-225ENST00000600733 NCR3LG1Q68D85 454 aa16.89■□□□□ 0.29
SHKBP1-225ENST00000600733 OR10D4PQ8NGN7 298 aa16.89■□□□□ 0.29
SHKBP1-225ENST00000600733 PLPPR2Q96GM1 343 aa16.89■□□□□ 0.29
SHKBP1-225ENST00000600733 NAT8Q9UHE5 227 aa16.89■□□□□ 0.29
SHKBP1-225ENST00000600733 BOD1L1Q8NFC6 3051 aa16.88■□□□□ 0.29
SHKBP1-225ENST00000600733 SEC14L6B5MCN3 397 aa16.88■□□□□ 0.29
SHKBP1-225ENST00000600733 M0R296 226 aa16.88■□□□□ 0.29
SHKBP1-225ENST00000600733 CECR9P0C854 216 aa16.88■□□□□ 0.29
SHKBP1-225ENST00000600733 PMS2P11Q13670 270 aa16.88■□□□□ 0.29
SHKBP1-225ENST00000600733 ATP6V1FQ16864 119 aa16.88■□□□□ 0.29
SHKBP1-225ENST00000600733 FAM209BQ5JX69 171 aa16.88■□□□□ 0.29
SHKBP1-225ENST00000600733 HIST3H2BBQ8N257 126 aa16.88■□□□□ 0.29
SHKBP1-225ENST00000600733 NPCDR1Q9BY65 106 aa16.88■□□□□ 0.29
SHKBP1-225ENST00000600733 HEATR1Q9H583 2144 aaKnown RBP16.88■□□□□ 0.29
SHKBP1-225ENST00000600733 PTPRBP23467 1997 aa16.88■□□□□ 0.29
SHKBP1-225ENST00000600733 CTXND1A0A1B0GTU2 59 aa16.87■□□□□ 0.29
SHKBP1-225ENST00000600733 NKX2-8O15522 239 aa16.87■□□□□ 0.29
SHKBP1-225ENST00000600733 OPN1MWP04001 364 aa16.87■□□□□ 0.29
SHKBP1-225ENST00000600733 OPN1MW2P0DN77 364 aa16.87■□□□□ 0.29
SHKBP1-225ENST00000600733 OPN1MW3P0DN78 364 aa16.87■□□□□ 0.29
SHKBP1-225ENST00000600733 CCL11P51671 97 aa16.87■□□□□ 0.29
SHKBP1-225ENST00000600733 CYP2G1PQ6ZSU1 146 aa16.87■□□□□ 0.29
SHKBP1-225ENST00000600733 C9orf106Q8NAJ2 232 aa16.87■□□□□ 0.29
SHKBP1-225ENST00000600733 PRR7Q8TB68 274 aa16.87■□□□□ 0.29
SHKBP1-225ENST00000600733 INTS1Q8N201 2190 aaKnown RBP16.87■□□□□ 0.29
SHKBP1-225ENST00000600733 TRBV24-1A0A075B6N3 115 aa16.87■□□□□ 0.29
SHKBP1-225ENST00000600733 PHOX2AO14813 284 aa16.87■□□□□ 0.29
SHKBP1-225ENST00000600733 RAB29O14966 203 aa16.87■□□□□ 0.29
SHKBP1-225ENST00000600733 PSMB3P49720 205 aa16.87■□□□□ 0.29
SHKBP1-225ENST00000600733 EDDM3AQ14507 147 aa16.87■□□□□ 0.29
SHKBP1-225ENST00000600733 TMEM241Q24JQ0 296 aa16.87■□□□□ 0.29
SHKBP1-225ENST00000600733 C16orf82Q7Z2V1 217 aa16.87■□□□□ 0.29
SHKBP1-225ENST00000600733 NECAP1Q8NC96 275 aa16.87■□□□□ 0.29
SHKBP1-225ENST00000600733 LOXL4Q96JB6 756 aa16.87■□□□□ 0.29
SHKBP1-225ENST00000600733 MARCH11A6NNE9 402 aa16.86■□□□□ 0.29
SHKBP1-225ENST00000600733 KBTBD11O94819 623 aa16.86■□□□□ 0.29
SHKBP1-225ENST00000600733 IGHG3P01860 377 aa16.86■□□□□ 0.29
SHKBP1-225ENST00000600733 FOXF2Q12947 444 aa16.86■□□□□ 0.29
SHKBP1-225ENST00000600733 FDCSPQ8NFU4 85 aa16.86■□□□□ 0.29
SHKBP1-225ENST00000600733 AGMATQ9BSE5 352 aa16.86■□□□□ 0.29
SHKBP1-225ENST00000600733 MRPL37Q9BZE1 423 aaKnown RBP16.86■□□□□ 0.29
SHKBP1-225ENST00000600733 CTDSP1Q9GZU7 261 aa16.86■□□□□ 0.29
SHKBP1-225ENST00000600733 SVILO95425 2214 aa16.86■□□□□ 0.29
SHKBP1-225ENST00000600733 COX5AP20674 150 aa16.86■□□□□ 0.29
SHKBP1-225ENST00000600733 SMIM21Q3B7S5 101 aa16.86■□□□□ 0.29
SHKBP1-225ENST00000600733 CD177Q8N6Q3 437 aa16.86■□□□□ 0.29
SHKBP1-225ENST00000600733 OR4F5Q8NH21 305 aa16.86■□□□□ 0.29
SHKBP1-225ENST00000600733 RAB24Q969Q5 203 aa16.86■□□□□ 0.29
SHKBP1-225ENST00000600733 OR4F4Q96R69 305 aa16.86■□□□□ 0.29
SHKBP1-225ENST00000600733 TAAR6Q96RI8 345 aa16.86■□□□□ 0.29
SHKBP1-225ENST00000600733 PARLQ9H300 379 aa16.86■□□□□ 0.29
SHKBP1-225ENST00000600733 CACNA1GO43497 2377 aa16.86■□□□□ 0.29
SHKBP1-225ENST00000600733 RPL23P62829 140 aaKnown RBP16.85■□□□□ 0.29
SHKBP1-225ENST00000600733 SNX22Q96L94 193 aa16.85■□□□□ 0.29
SHKBP1-225ENST00000600733 CIB3Q96Q77 187 aaPredicted RBP16.85■□□□□ 0.29
SHKBP1-225ENST00000600733 QTRT1Q9BXR0 403 aaKnown RBP16.85■□□□□ 0.29
SHKBP1-225ENST00000600733 HCFC1P51610 2035 aa16.85■□□□□ 0.29
SHKBP1-225ENST00000600733 MBP02144 154 aa16.85■□□□□ 0.29
SHKBP1-225ENST00000600733 RTP5Q14D33 572 aa16.85■□□□□ 0.29
SHKBP1-225ENST00000600733 BSXQ3C1V8 233 aa16.85■□□□□ 0.29
SHKBP1-225ENST00000600733 ZNF66Q6ZN08 573 aa16.85■□□□□ 0.29
SHKBP1-225ENST00000600733 LURAP1Q96LR2 239 aa16.85■□□□□ 0.29
SHKBP1-225ENST00000600733 ACTR3CQ9C0K3 210 aaPredicted RBP16.85■□□□□ 0.29
SHKBP1-225ENST00000600733 C15orf65H3BRN8 121 aa16.84■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms