RNA–Protein interactions for RNA: ENST00000594090.5

VRK3-206, Transcript of vaccinia related kinase 3, humanhuman

TSL 1 (best)

Gene VRK3, Length 1,448 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-206ENST00000594090 RNF5Q99942 180 aa11.48□□□□□ -0.57
VRK3-206ENST00000594090 CCDC59Q9P031 241 aaKnown RBP11.48□□□□□ -0.57
VRK3-206ENST00000594090 MRPS7Q9Y2R9 242 aaKnown RBP11.48□□□□□ -0.57
VRK3-206ENST00000594090 TRRAPQ9Y4A5 3859 aa11.48□□□□□ -0.57
VRK3-206ENST00000594090 H3BMQ9 156 aa11.47□□□□□ -0.57
VRK3-206ENST00000594090 SLC22A5O76082 557 aa11.47□□□□□ -0.57
VRK3-206ENST00000594090 OR5H8P0DN80 308 aa11.47□□□□□ -0.57
VRK3-206ENST00000594090 NAT1P18440 290 aa11.47□□□□□ -0.57
VRK3-206ENST00000594090 AADACP22760 399 aa11.47□□□□□ -0.57
VRK3-206ENST00000594090 FCGR2CP31995 323 aa11.47□□□□□ -0.57
VRK3-206ENST00000594090 DUTP33316 252 aaKnown RBP11.47□□□□□ -0.57
VRK3-206ENST00000594090 TAGLNQ01995 201 aaKnown RBP11.47□□□□□ -0.57
VRK3-206ENST00000594090 CDK10Q15131 360 aa11.47□□□□□ -0.57
VRK3-206ENST00000594090 SNX29P2Q8IUI4 249 aa11.47□□□□□ -0.57
VRK3-206ENST00000594090 DYNC2LI1Q8TCX1 351 aa11.47□□□□□ -0.57
VRK3-206ENST00000594090 GPX8Q8TED1 209 aa11.47□□□□□ -0.57
VRK3-206ENST00000594090 DDB2Q92466 427 aa11.47□□□□□ -0.57
VRK3-206ENST00000594090 FLYWCH2Q96CP2 140 aaKnown RBP11.47□□□□□ -0.57
VRK3-206ENST00000594090 ADTRPQ96IZ2 230 aa11.47□□□□□ -0.57
VRK3-206ENST00000594090 TSNAXQ99598 290 aaKnown RBP11.47□□□□□ -0.57
VRK3-206ENST00000594090 FBXL15Q9H469 300 aa11.47□□□□□ -0.57
VRK3-206ENST00000594090 ZNF580Q9UK33 172 aa11.47□□□□□ -0.57
VRK3-206ENST00000594090 ADAM30Q9UKF2 790 aa11.47□□□□□ -0.57
VRK3-206ENST00000594090 IGHV7-81A0A0B4J1V7 117 aa11.46□□□□□ -0.57
VRK3-206ENST00000594090 LINC00473A8K010 186 aa11.46□□□□□ -0.57
VRK3-206ENST00000594090 SPDEFO95238 335 aa11.46□□□□□ -0.57
VRK3-206ENST00000594090 PPYP01298 95 aa11.46□□□□□ -0.57
VRK3-206ENST00000594090 IGLV2-14P01704 120 aa11.46□□□□□ -0.57
VRK3-206ENST00000594090 OPN1MWP04001 364 aa11.46□□□□□ -0.57
VRK3-206ENST00000594090 OPN1MW2P0DN77 364 aa11.46□□□□□ -0.57
VRK3-206ENST00000594090 OPN1MW3P0DN78 364 aa11.46□□□□□ -0.57
VRK3-206ENST00000594090 RPS16P62249 146 aaKnown RBP11.46□□□□□ -0.57
VRK3-206ENST00000594090 SLC35B1P78383 322 aa11.46□□□□□ -0.57
VRK3-206ENST00000594090 PLGLAQ15195 96 aa11.46□□□□□ -0.57
VRK3-206ENST00000594090 LIN54Q6MZP7 749 aa11.46□□□□□ -0.57
VRK3-206ENST00000594090 BVESQ8NE79 360 aa11.46□□□□□ -0.57
VRK3-206ENST00000594090 MIXL1Q9H2W2 232 aa11.46□□□□□ -0.57
VRK3-206ENST00000594090 SCPEP1Q9HB40 452 aa11.46□□□□□ -0.57
VRK3-206ENST00000594090 EHFQ9NZC4 300 aa11.46□□□□□ -0.57
VRK3-206ENST00000594090 METTL1Q9UBP6 276 aaKnown RBP11.46□□□□□ -0.57
VRK3-206ENST00000594090 EXTL2Q9UBQ6 330 aa11.46□□□□□ -0.57
VRK3-206ENST00000594090 RBMX2Q9Y388 322 aaKnown RBP11.46□□□□□ -0.57
VRK3-206ENST00000594090 TSSC4Q9Y5U2 329 aaPredicted RBP11.46□□□□□ -0.57
VRK3-206ENST00000594090 A0A1W2PRX2 142 aa11.45□□□□□ -0.58
VRK3-206ENST00000594090 TCRBV4S1A1TA0A5B7 111 aa11.45□□□□□ -0.58
VRK3-206ENST00000594090 IGF1P05019 195 aa11.45□□□□□ -0.58
VRK3-206ENST00000594090 RRASP10301 218 aa11.45□□□□□ -0.58
VRK3-206ENST00000594090 TAS2R46P59540 309 aa11.45□□□□□ -0.58
VRK3-206ENST00000594090 CBX3Q13185 183 aa11.45□□□□□ -0.58
VRK3-206ENST00000594090 PSG5Q15238 335 aa11.45□□□□□ -0.58
VRK3-206ENST00000594090 RTL8BQ17RB0 113 aa11.45□□□□□ -0.58
VRK3-206ENST00000594090 KHDC1LQ5JSQ8 128 aa11.45□□□□□ -0.58
VRK3-206ENST00000594090 LAX1Q8IWV1 398 aa11.45□□□□□ -0.58
VRK3-206ENST00000594090 COMMD1Q8N668 190 aa11.45□□□□□ -0.58
VRK3-206ENST00000594090 FAM110DQ8TAY7 271 aaPredicted RBP11.45□□□□□ -0.58
VRK3-206ENST00000594090 HARBI1Q96MB7 349 aa11.45□□□□□ -0.58
VRK3-206ENST00000594090 GON7Q9BXV9 100 aa11.45□□□□□ -0.58
VRK3-206ENST00000594090 OR51J1Q9H342 316 aa11.45□□□□□ -0.58
VRK3-206ENST00000594090 CEPT1Q9Y6K0 416 aa11.45□□□□□ -0.58
VRK3-206ENST00000594090 FBN3Q75N90 2809 aa11.45□□□□□ -0.58
VRK3-206ENST00000594090 SULT1C2O00338 296 aa11.44□□□□□ -0.58
VRK3-206ENST00000594090 ATP6V0E1O15342 81 aa11.44□□□□□ -0.58
VRK3-206ENST00000594090 RGS5O15539 181 aa11.44□□□□□ -0.58
VRK3-206ENST00000594090 IGLV2-23P01705 113 aa11.44□□□□□ -0.58
VRK3-206ENST00000594090 VDAC1P21796 283 aa11.44□□□□□ -0.58
VRK3-206ENST00000594090 NDPQ00604 133 aa11.44□□□□□ -0.58
VRK3-206ENST00000594090 CFHR3Q02985 330 aa11.44□□□□□ -0.58
VRK3-206ENST00000594090 EIF4EBP1Q13541 118 aaPredicted RBP11.44□□□□□ -0.58
VRK3-206ENST00000594090 TMEM177Q53S58 311 aa11.44□□□□□ -0.58
VRK3-206ENST00000594090 KCTD9Q7L273 389 aa11.44□□□□□ -0.58
VRK3-206ENST00000594090 OVCH2Q7RTZ1 564 aa11.44□□□□□ -0.58
VRK3-206ENST00000594090 OR5H2Q8NGV7 314 aa11.44□□□□□ -0.58
VRK3-206ENST00000594090 SECTM1Q8WVN6 248 aa11.44□□□□□ -0.58
VRK3-206ENST00000594090 GIMAP1Q8WWP7 306 aa11.44□□□□□ -0.58
VRK3-206ENST00000594090 HSD17B10Q99714 261 aaKnown RBP11.44□□□□□ -0.58
VRK3-206ENST00000594090 PARP11Q9NR21 331 aa11.44□□□□□ -0.58
VRK3-206ENST00000594090 TPSG1Q9NRR2 321 aa11.44□□□□□ -0.58
VRK3-206ENST00000594090 FCN1O00602 326 aa11.43□□□□□ -0.58
VRK3-206ENST00000594090 CTDSP2O14595 271 aa11.43□□□□□ -0.58
VRK3-206ENST00000594090 SHOXO15266 292 aa11.43□□□□□ -0.58
VRK3-206ENST00000594090 SLC25A17O43808 307 aa11.43□□□□□ -0.58
VRK3-206ENST00000594090 CRYZL1O95825 349 aa11.43□□□□□ -0.58
VRK3-206ENST00000594090 PMP2P02689 132 aa11.43□□□□□ -0.58
VRK3-206ENST00000594090 RCVRNP35243 200 aa11.43□□□□□ -0.58
VRK3-206ENST00000594090 RFX2P48378 723 aa11.43□□□□□ -0.58
VRK3-206ENST00000594090 FXYD4P59646 89 aa11.43□□□□□ -0.58
VRK3-206ENST00000594090 RPL30P62888 115 aaKnown RBP11.43□□□□□ -0.58
VRK3-206ENST00000594090 DYRK1AQ13627 763 aa11.43□□□□□ -0.58
VRK3-206ENST00000594090 MSMO1Q15800 293 aa11.43□□□□□ -0.58
VRK3-206ENST00000594090 ZNF660Q6AZW8 331 aaPredicted RBP11.43□□□□□ -0.58
VRK3-206ENST00000594090 TEX38Q6PEX7 206 aa11.43□□□□□ -0.58
VRK3-206ENST00000594090 OR4F17Q8NGA8 305 aa11.43□□□□□ -0.58
VRK3-206ENST00000594090 R3HDM4Q96D70 268 aa11.43□□□□□ -0.58
VRK3-206ENST00000594090 OR4F4Q96R69 305 aa11.43□□□□□ -0.58
VRK3-206ENST00000594090 SLC5A7Q9GZV3 580 aa11.43□□□□□ -0.58
VRK3-206ENST00000594090 TAS2R8Q9NYW2 309 aa11.43□□□□□ -0.58
VRK3-206ENST00000594090 TPPPO94811 219 aa11.43□□□□□ -0.58
VRK3-206ENST00000594090 CA2P00918 260 aa11.43□□□□□ -0.58
VRK3-206ENST00000594090 HLA-DMAP28067 261 aa11.43□□□□□ -0.58
VRK3-206ENST00000594090 HRH1P35367 487 aa11.43□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms