RNA–Protein interactions for RNA: ENST00000582653.1

SHMT1-209, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 3

Gene SHMT1, Length 879 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-209ENST00000582653 NR2C2APQ86WQ0 139 aa15.85■□□□□ 0.13
SHMT1-209ENST00000582653 OR4A4PQ8NGN8 299 aa15.85■□□□□ 0.13
SHMT1-209ENST00000582653 TPSG1Q9NRR2 321 aa15.85■□□□□ 0.13
SHMT1-209ENST00000582653 RAB26Q9ULW5 256 aa15.85■□□□□ 0.13
SHMT1-209ENST00000582653 SMIM30A4D0T7 59 aa15.84■□□□□ 0.13
SHMT1-209ENST00000582653 RAB27BO00194 218 aa15.84■□□□□ 0.13
SHMT1-209ENST00000582653 TFAP2AP05549 437 aa15.84■□□□□ 0.13
SHMT1-209ENST00000582653 OR8U9P0C7N5 309 aa15.84■□□□□ 0.13
SHMT1-209ENST00000582653 RAB3BP20337 219 aa15.84■□□□□ 0.13
SHMT1-209ENST00000582653 MYL9P24844 172 aa15.84■□□□□ 0.13
SHMT1-209ENST00000582653 RANBP1P43487 201 aa15.84■□□□□ 0.13
SHMT1-209ENST00000582653 TMEM267Q0VDI3 215 aaPredicted RBP15.84■□□□□ 0.13
SHMT1-209ENST00000582653 C22orf42Q6IC83 251 aa15.84■□□□□ 0.13
SHMT1-209ENST00000582653 UNQ5815/PRO19632Q6UWF5 114 aa15.84■□□□□ 0.13
SHMT1-209ENST00000582653 ZNF429Q86V71 674 aa15.84■□□□□ 0.13
SHMT1-209ENST00000582653 TCTEX1D1Q8N7M0 179 aa15.84■□□□□ 0.13
SHMT1-209ENST00000582653 LFNGQ8NES3 379 aa15.84■□□□□ 0.13
SHMT1-209ENST00000582653 DCUN1D4Q92564 292 aa15.84■□□□□ 0.13
SHMT1-209ENST00000582653 MS4A10Q96PG2 267 aa15.84■□□□□ 0.13
SHMT1-209ENST00000582653 MFNGO00587 321 aa15.83■□□□□ 0.12
SHMT1-209ENST00000582653 SERPINB10P48595 397 aa15.83■□□□□ 0.12
SHMT1-209ENST00000582653 ZNF562Q6V9R5 426 aa15.83■□□□□ 0.12
SHMT1-209ENST00000582653 TSNAXQ99598 290 aaKnown RBP15.83■□□□□ 0.12
SHMT1-209ENST00000582653 TOLLIPQ9H0E2 274 aa15.83■□□□□ 0.12
SHMT1-209ENST00000582653 ELF5Q9UKW6 265 aaPredicted RBP15.83■□□□□ 0.12
SHMT1-209ENST00000582653 TRBV6-7A0A0A0MS04 114 aa15.82■□□□□ 0.12
SHMT1-209ENST00000582653 SLC25A17O43808 307 aa15.82■□□□□ 0.12
SHMT1-209ENST00000582653 APOA2P02652 100 aa15.82■□□□□ 0.12
SHMT1-209ENST00000582653 HIST1H1DP16402 221 aaKnown RBP15.82■□□□□ 0.12
SHMT1-209ENST00000582653 RAB6AP20340 208 aa15.82■□□□□ 0.12
SHMT1-209ENST00000582653 GADD45AP24522 165 aa15.82■□□□□ 0.12
SHMT1-209ENST00000582653 SLURP1P55000 103 aa15.82■□□□□ 0.12
SHMT1-209ENST00000582653 AKIRIN2Q53H80 203 aa15.82■□□□□ 0.12
SHMT1-209ENST00000582653 ACTBL2Q562R1 376 aa15.82■□□□□ 0.12
SHMT1-209ENST00000582653 PDPNQ86YL7 162 aa15.82■□□□□ 0.12
SHMT1-209ENST00000582653 OR10J5Q8NHC4 309 aa15.82■□□□□ 0.12
SHMT1-209ENST00000582653 DLX4Q92988 240 aaPredicted RBP15.82■□□□□ 0.12
SHMT1-209ENST00000582653 FLYWCH2Q96CP2 140 aaKnown RBP15.82■□□□□ 0.12
SHMT1-209ENST00000582653 C5orf30Q96GV9 206 aa15.82■□□□□ 0.12
SHMT1-209ENST00000582653 CABLES2Q9BTV7 478 aa15.82■□□□□ 0.12
SHMT1-209ENST00000582653 OR2D2Q9H210 308 aa15.82■□□□□ 0.12
SHMT1-209ENST00000582653 SLC35D1Q9NTN3 355 aa15.82■□□□□ 0.12
SHMT1-209ENST00000582653 SDHAF2Q9NX18 166 aa15.82■□□□□ 0.12
SHMT1-209ENST00000582653 IGKV1D-8A0A087WSZ0 117 aa15.81■□□□□ 0.12
SHMT1-209ENST00000582653 OVOL1O14753 267 aa15.81■□□□□ 0.12
SHMT1-209ENST00000582653 ARPC1BO15143 372 aaKnown RBP15.81■□□□□ 0.12
SHMT1-209ENST00000582653 IGHV3-11P01762 117 aa15.81■□□□□ 0.12
SHMT1-209ENST00000582653 ARFRP1Q13795 201 aa15.81■□□□□ 0.12
SHMT1-209ENST00000582653 FXYD3Q14802 87 aa15.81■□□□□ 0.12
SHMT1-209ENST00000582653 SPARTQ8N0X7 666 aa15.81■□□□□ 0.12
SHMT1-209ENST00000582653 ZNF436-AS1Q8NC38 126 aaPredicted RBP15.81■□□□□ 0.12
SHMT1-209ENST00000582653 ATG5Q9H1Y0 275 aa15.81■□□□□ 0.12
SHMT1-209ENST00000582653 SMAD5-AS1Q9Y6J3 95 aa15.81■□□□□ 0.12
SHMT1-209ENST00000582653 IGHV4OR15-8A0A075B7B6 117 aa15.8■□□□□ 0.12
SHMT1-209ENST00000582653 A0A087WW49 117 aa15.8■□□□□ 0.12
SHMT1-209ENST00000582653 LINC01619G3V211 115 aa15.8■□□□□ 0.12
SHMT1-209ENST00000582653 SPDEFO95238 335 aa15.8■□□□□ 0.12
SHMT1-209ENST00000582653 ATP6V1G2O95670 118 aa15.8■□□□□ 0.12
SHMT1-209ENST00000582653 LGALS1P09382 135 aaKnown RBP15.8■□□□□ 0.12
SHMT1-209ENST00000582653 GABARAPL2P60520 117 aa15.8■□□□□ 0.12
SHMT1-209ENST00000582653 PJVKQ0ZLH3 352 aa15.8■□□□□ 0.12
SHMT1-209ENST00000582653 UBE2UQ5VVX9 321 aa15.8■□□□□ 0.12
SHMT1-209ENST00000582653 GRPEL2Q8TAA5 225 aa15.8■□□□□ 0.12
SHMT1-209ENST00000582653 ARPC1AQ92747 370 aa15.8■□□□□ 0.12
SHMT1-209ENST00000582653 ASCL2Q99929 193 aa15.8■□□□□ 0.12
SHMT1-209ENST00000582653 METTL21EPA6NDL7 271 aa15.79■□□□□ 0.12
SHMT1-209ENST00000582653 IGLV2-23P01705 113 aa15.79■□□□□ 0.12
SHMT1-209ENST00000582653 GALP22466 123 aa15.79■□□□□ 0.12
SHMT1-209ENST00000582653 PSMB9P28065 219 aa15.79■□□□□ 0.12
SHMT1-209ENST00000582653 TALDO1P37837 337 aa15.79■□□□□ 0.12
SHMT1-209ENST00000582653 TPPP2P59282 170 aa15.79■□□□□ 0.12
SHMT1-209ENST00000582653 SSBP2P81877 361 aaPredicted RBP15.79■□□□□ 0.12
SHMT1-209ENST00000582653 PYHIN1Q6K0P9 492 aa15.79■□□□□ 0.12
SHMT1-209ENST00000582653 BVESQ8NE79 360 aa15.79■□□□□ 0.12
SHMT1-209ENST00000582653 TXNL4BQ9NX01 149 aaKnown RBP15.79■□□□□ 0.12
SHMT1-209ENST00000582653 MRPS14O60783 128 aaKnown RBP15.78■□□□□ 0.12
SHMT1-209ENST00000582653 LY86O95711 162 aa15.78■□□□□ 0.12
SHMT1-209ENST00000582653 CRYGBP07316 175 aa15.78■□□□□ 0.12
SHMT1-209ENST00000582653 OR5T1Q8NG75 326 aa15.78■□□□□ 0.12
SHMT1-209ENST00000582653 GINS4Q9BRT9 223 aa15.78■□□□□ 0.12
SHMT1-209ENST00000582653 RBM7Q9Y580 266 aaKnown RBP15.78■□□□□ 0.12
SHMT1-209ENST00000582653 SRRM4A7MD48 611 aaKnown RBP15.77■□□□□ 0.12
SHMT1-209ENST00000582653 J3QRK9 145 aa15.77■□□□□ 0.12
SHMT1-209ENST00000582653 SAP30O75446 220 aa15.77■□□□□ 0.12
SHMT1-209ENST00000582653 CNIH1O95406 144 aa15.77■□□□□ 0.12
SHMT1-209ENST00000582653 TRGV3P03979 118 aa15.77■□□□□ 0.12
SHMT1-209ENST00000582653 HSPB1P04792 205 aaKnown RBP15.77■□□□□ 0.12
SHMT1-209ENST00000582653 CD40LGP29965 261 aa15.77■□□□□ 0.12
SHMT1-209ENST00000582653 CDNFQ49AH0 187 aa15.77■□□□□ 0.12
SHMT1-209ENST00000582653 ACSM6Q6P461 480 aa15.77■□□□□ 0.12
SHMT1-209ENST00000582653 RHOVQ96L33 236 aa15.77■□□□□ 0.12
SHMT1-209ENST00000582653 HARBI1Q96MB7 349 aa15.77■□□□□ 0.12
SHMT1-209ENST00000582653 ZNF355PQ9NSJ1 428 aa15.77■□□□□ 0.12
SHMT1-209ENST00000582653 RYR3Q15413 4870 aa15.76■□□□□ 0.11
SHMT1-209ENST00000582653 FGF9P31371 208 aaPredicted RBP15.76■□□□□ 0.11
SHMT1-209ENST00000582653 LGALS7P47929 136 aa15.76■□□□□ 0.11
SHMT1-209ENST00000582653 H1FOOQ8IZA3 346 aaPredicted RBP15.76■□□□□ 0.11
SHMT1-209ENST00000582653 ST6GALNAC5Q9BVH7 336 aa15.76■□□□□ 0.11
SHMT1-209ENST00000582653 SLA2Q9H6Q3 261 aa15.76■□□□□ 0.11
SHMT1-209ENST00000582653 HUWE1Q7Z6Z7 4374 aaKnown RBP15.76■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 44 ms