RNA–Protein interactions for RNA: ENST00000579640.5

SS18-213, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,840 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-213ENST00000579640 SAA4P35542 130 aa8.7□□□□□ -1.02
SS18-213ENST00000579640 ARHGDIBP52566 201 aa8.7□□□□□ -1.02
SS18-213ENST00000579640 SUPT4H1P63272 117 aaKnown RBP8.7□□□□□ -1.02
SS18-213ENST00000579640 SRPXP78539 464 aa8.7□□□□□ -1.02
SS18-213ENST00000579640 KRTAP1-1Q07627 177 aa8.7□□□□□ -1.02
SS18-213ENST00000579640 DHRS2Q13268 280 aa8.7□□□□□ -1.02
SS18-213ENST00000579640 C1orf229Q6ZS94 237 aaPredicted RBP8.7□□□□□ -1.02
SS18-213ENST00000579640 OR51H1Q8NH63 302 aa8.7□□□□□ -1.02
SS18-213ENST00000579640 ZNF431Q8TF32 576 aaPredicted RBP8.7□□□□□ -1.02
SS18-213ENST00000579640 TCTEX1D2Q8WW35 142 aa8.7□□□□□ -1.02
SS18-213ENST00000579640 LINC00473A8K010 186 aa8.69□□□□□ -1.02
SS18-213ENST00000579640 RBFOX2O43251 390 aaKnown RBP eCLIP8.69□□□□□ -1.02
SS18-213ENST00000579640 CREBL2O60519 120 aaPredicted RBP8.69□□□□□ -1.02
SS18-213ENST00000579640 DUS4LO95620 317 aaKnown RBP8.69□□□□□ -1.02
SS18-213ENST00000579640 FSHBP01225 129 aa8.69□□□□□ -1.02
SS18-213ENST00000579640 APOA2P02652 100 aa8.69□□□□□ -1.02
SS18-213ENST00000579640 OR5AC1P0C628 307 aa8.69□□□□□ -1.02
SS18-213ENST00000579640 IGHV4-38-2P0DP08 117 aa8.69□□□□□ -1.02
SS18-213ENST00000579640 RRASP10301 218 aa8.69□□□□□ -1.02
SS18-213ENST00000579640 MC5RP33032 325 aa8.69□□□□□ -1.02
SS18-213ENST00000579640 RPL30P62888 115 aaKnown RBP8.69□□□□□ -1.02
SS18-213ENST00000579640 KLF17Q5JT82 389 aaPredicted RBP8.69□□□□□ -1.02
SS18-213ENST00000579640 LHFPL4Q7Z7J7 247 aa8.69□□□□□ -1.02
SS18-213ENST00000579640 DDB2Q92466 427 aa8.69□□□□□ -1.02
SS18-213ENST00000579640 NABP2Q9BQ15 211 aa8.69□□□□□ -1.02
SS18-213ENST00000579640 SEC22CQ9BRL7 303 aa8.69□□□□□ -1.02
SS18-213ENST00000579640 TMUB1Q9BVT8 246 aa8.69□□□□□ -1.02
SS18-213ENST00000579640 MRPL20Q9BYC9 149 aaKnown RBP8.69□□□□□ -1.02
SS18-213ENST00000579640 NUP50Q9UKX7 468 aa8.69□□□□□ -1.02
SS18-213ENST00000579640 MAP1AP78559 2803 aaPredicted RBP8.69□□□□□ -1.02
SS18-213ENST00000579640 A0A0B4J293 547 aa8.68□□□□□ -1.02
SS18-213ENST00000579640 A0A0B4J2A0 478 aa8.68□□□□□ -1.02
SS18-213ENST00000579640 IGHV1-3A0A0C4DH29 117 aa8.68□□□□□ -1.02
SS18-213ENST00000579640 CD99P14209 185 aa8.68□□□□□ -1.02
SS18-213ENST00000579640 RPA2P15927 270 aa8.68□□□□□ -1.02
SS18-213ENST00000579640 UCP1P25874 307 aa8.68□□□□□ -1.02
SS18-213ENST00000579640 REG1BP48304 166 aa8.68□□□□□ -1.02
SS18-213ENST00000579640 CBX3Q13185 183 aa8.68□□□□□ -1.02
SS18-213ENST00000579640 DIAPH2-AS1Q14236 149 aa8.68□□□□□ -1.02
SS18-213ENST00000579640 TMEM187Q14656 261 aa8.68□□□□□ -1.02
SS18-213ENST00000579640 SLC9A3R2Q15599 337 aa8.68□□□□□ -1.02
SS18-213ENST00000579640 RTL8BQ17RB0 113 aa8.68□□□□□ -1.02
SS18-213ENST00000579640 LDLRAD2Q5SZI1 272 aa8.68□□□□□ -1.02
SS18-213ENST00000579640 DHRS7BQ6IAN0 325 aaPredicted RBP8.68□□□□□ -1.02
SS18-213ENST00000579640 SPAG16Q8N0X2 631 aa8.68□□□□□ -1.02
SS18-213ENST00000579640 ZNF383Q8NA42 475 aa8.68□□□□□ -1.02
SS18-213ENST00000579640 DRAXINQ8NBI3 349 aaPredicted RBP8.68□□□□□ -1.02
SS18-213ENST00000579640 OR5AN1Q8NGI8 311 aa8.68□□□□□ -1.02
SS18-213ENST00000579640 COQ8AQ8NI60 647 aa8.68□□□□□ -1.02
SS18-213ENST00000579640 MITD1Q8WV92 249 aa8.68□□□□□ -1.02
SS18-213ENST00000579640 TP53RKQ96S44 253 aa8.68□□□□□ -1.02
SS18-213ENST00000579640 GPHA2Q96T91 129 aa8.68□□□□□ -1.02
SS18-213ENST00000579640 PHB2Q99623 299 aa8.68□□□□□ -1.02
SS18-213ENST00000579640 TMEM222Q9H0R3 208 aa8.68□□□□□ -1.02
SS18-213ENST00000579640 TMEM160Q9NX00 188 aa8.68□□□□□ -1.02
SS18-213ENST00000579640 SHPKQ9UHJ6 478 aa8.68□□□□□ -1.02
SS18-213ENST00000579640 ALG5Q9Y673 324 aa8.68□□□□□ -1.02
SS18-213ENST00000579640 FLNAP21333 2647 aaKnown RBP8.68□□□□□ -1.02
SS18-213ENST00000579640 A0A0A6YYJ9 748 aa8.68□□□□□ -1.02
SS18-213ENST00000579640 A0A1W2PPI3 338 aa8.68□□□□□ -1.02
SS18-213ENST00000579640 A8MV72 311 aaPredicted RBP8.68□□□□□ -1.02
SS18-213ENST00000579640 H0YJW9 148 aa8.68□□□□□ -1.02
SS18-213ENST00000579640 SERPINE2P07093 398 aa8.68□□□□□ -1.02
SS18-213ENST00000579640 RAB13P51153 203 aa8.68□□□□□ -1.02
SS18-213ENST00000579640 SSX2Q16385 188 aa8.68□□□□□ -1.02
SS18-213ENST00000579640 RUSC1-AS1Q66K80 236 aa8.68□□□□□ -1.02
SS18-213ENST00000579640 LIAT1Q6ZQX7 453 aa8.68□□□□□ -1.02
SS18-213ENST00000579640 PDPNQ86YL7 162 aa8.68□□□□□ -1.02
SS18-213ENST00000579640 LGI3Q8N145 548 aa8.68□□□□□ -1.02
SS18-213ENST00000579640 C12orf45Q8N5I9 185 aaPredicted RBP8.68□□□□□ -1.02
SS18-213ENST00000579640 LRTM2Q8N967 370 aa8.68□□□□□ -1.02
SS18-213ENST00000579640 OR52B4Q8NGK2 314 aa8.68□□□□□ -1.02
SS18-213ENST00000579640 OR4S2Q8NH73 311 aa8.68□□□□□ -1.02
SS18-213ENST00000579640 CASTOR1Q8WTX7 329 aa8.68□□□□□ -1.02
SS18-213ENST00000579640 GLYATL2Q8WU03 294 aa8.68□□□□□ -1.02
SS18-213ENST00000579640 IL22RA2Q969J5 263 aa8.68□□□□□ -1.02
SS18-213ENST00000579640 TMEM56Q96MV1 263 aa8.68□□□□□ -1.02
SS18-213ENST00000579640 OR51J1Q9H342 316 aa8.68□□□□□ -1.02
SS18-213ENST00000579640 YAE1D1Q9NRH1 226 aa8.68□□□□□ -1.02
SS18-213ENST00000579640 SLC35D1Q9NTN3 355 aa8.68□□□□□ -1.02
SS18-213ENST00000579640 HILPDAQ9Y5L2 63 aa8.68□□□□□ -1.02
SS18-213ENST00000579640 TMEM56-RWDD3S4R434 201 aa8.68□□□□□ -1.02
SS18-213ENST00000579640 IGHV3OR16-10A0A075B7F0 116 aa8.67□□□□□ -1.02
SS18-213ENST00000579640 FCGR3BO75015 233 aa8.67□□□□□ -1.02
SS18-213ENST00000579640 ATG12O94817 140 aa8.67□□□□□ -1.02
SS18-213ENST00000579640 CDS2O95674 445 aa8.67□□□□□ -1.02
SS18-213ENST00000579640 HPRT1P00492 218 aa8.67□□□□□ -1.02
SS18-213ENST00000579640 HNF1AP20823 631 aa8.67□□□□□ -1.02
SS18-213ENST00000579640 CD1BP29016 333 aa8.67□□□□□ -1.02
SS18-213ENST00000579640 HABP2Q14520 560 aaPredicted RBP8.67□□□□□ -1.02
SS18-213ENST00000579640 SP6Q3SY56 376 aa8.67□□□□□ -1.02
SS18-213ENST00000579640 BRD3OSQ6XYD6 125 aa8.67□□□□□ -1.02
SS18-213ENST00000579640 C9orf139Q6ZV77 190 aa8.67□□□□□ -1.02
SS18-213ENST00000579640 MOB3BQ86TA1 216 aa8.67□□□□□ -1.02
SS18-213ENST00000579640 AJUBAQ96IF1 538 aa8.67□□□□□ -1.02
SS18-213ENST00000579640 WASHC3Q9Y3C0 194 aa8.67□□□□□ -1.02
SS18-213ENST00000579640 FAM96BQ9Y3D0 163 aa8.67□□□□□ -1.02
SS18-213ENST00000579640 DUXBA0A1W2PPF3 345 aa8.66□□□□□ -1.02
SS18-213ENST00000579640 FBP1P09467 338 aa8.66□□□□□ -1.02
SS18-213ENST00000579640 BRS3P32247 399 aa8.66□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 63 ms