RNA–Protein interactions for RNA: ENST00000576241.1

CCDC40-216, Transcript of coiled-coil domain containing 40, humanhuman

TSL 2

Gene CCDC40, Length 714 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-216ENST00000576241 AKIRIN2Q53H80 203 aa10.59□□□□□ -0.71
CCDC40-216ENST00000576241 ZNF436-AS1Q8NC38 126 aaPredicted RBP10.59□□□□□ -0.71
CCDC40-216ENST00000576241 LFNGQ8NES3 379 aa10.59□□□□□ -0.71
CCDC40-216ENST00000576241 OR4A4PQ8NGN8 299 aa10.59□□□□□ -0.71
CCDC40-216ENST00000576241 ARPC1AQ92747 370 aa10.59□□□□□ -0.71
CCDC40-216ENST00000576241 DLX4Q92988 240 aaPredicted RBP10.59□□□□□ -0.71
CCDC40-216ENST00000576241 FLYWCH2Q96CP2 140 aaKnown RBP10.59□□□□□ -0.71
CCDC40-216ENST00000576241 RAB3CQ96E17 227 aa10.59□□□□□ -0.71
CCDC40-216ENST00000576241 RDH8Q9NYR8 311 aa10.59□□□□□ -0.71
CCDC40-216ENST00000576241 RAB22AQ9UL26 194 aa10.59□□□□□ -0.71
CCDC40-216ENST00000576241 IGKV1-6A0A0C4DH72 117 aa10.58□□□□□ -0.72
CCDC40-216ENST00000576241 PDCD5O14737 125 aa10.58□□□□□ -0.72
CCDC40-216ENST00000576241 BET1O15155 118 aa10.58□□□□□ -0.72
CCDC40-216ENST00000576241 FABP7O15540 132 aa10.58□□□□□ -0.72
CCDC40-216ENST00000576241 SLC25A17O43808 307 aa10.58□□□□□ -0.72
CCDC40-216ENST00000576241 IGHV3-11P01762 117 aa10.58□□□□□ -0.72
CCDC40-216ENST00000576241 GADD45AP24522 165 aa10.58□□□□□ -0.72
CCDC40-216ENST00000576241 MAP2K4P45985 399 aa10.58□□□□□ -0.72
CCDC40-216ENST00000576241 CBX3Q13185 183 aa10.58□□□□□ -0.72
CCDC40-216ENST00000576241 PLAC9Q5JTB6 97 aa10.58□□□□□ -0.72
CCDC40-216ENST00000576241 HES5Q5TA89 166 aa10.58□□□□□ -0.72
CCDC40-216ENST00000576241 ZNF383Q8NA42 475 aa10.58□□□□□ -0.72
CCDC40-216ENST00000576241 OR10J5Q8NHC4 309 aa10.58□□□□□ -0.72
CCDC40-216ENST00000576241 GRPEL2Q8TAA5 225 aa10.58□□□□□ -0.72
CCDC40-216ENST00000576241 MUC7Q8TAX7 377 aa10.58□□□□□ -0.72
CCDC40-216ENST00000576241 MS4A10Q96PG2 267 aa10.58□□□□□ -0.72
CCDC40-216ENST00000576241 ASCL2Q99929 193 aa10.58□□□□□ -0.72
CCDC40-216ENST00000576241 SLA2Q9H6Q3 261 aa10.58□□□□□ -0.72
CCDC40-216ENST00000576241 SLC35D1Q9NTN3 355 aa10.58□□□□□ -0.72
CCDC40-216ENST00000576241 BLOC1S6Q9UL45 172 aa10.58□□□□□ -0.72
CCDC40-216ENST00000576241 IGHV4OR15-8A0A075B7B6 117 aa10.57□□□□□ -0.72
CCDC40-216ENST00000576241 A0A087WW49 117 aa10.57□□□□□ -0.72
CCDC40-216ENST00000576241 TMEM272A0A1B0GTI8 110 aa10.57□□□□□ -0.72
CCDC40-216ENST00000576241 ARPC1BO15143 372 aaKnown RBP10.57□□□□□ -0.72
CCDC40-216ENST00000576241 LDLRAD4O15165 306 aa10.57□□□□□ -0.72
CCDC40-216ENST00000576241 PROP1O75360 226 aa10.57□□□□□ -0.72
CCDC40-216ENST00000576241 CNIH1O95406 144 aa10.57□□□□□ -0.72
CCDC40-216ENST00000576241 TRGV3P03979 118 aa10.57□□□□□ -0.72
CCDC40-216ENST00000576241 HSPB1P04792 205 aaKnown RBP10.57□□□□□ -0.72
CCDC40-216ENST00000576241 FCGR3AP08637 254 aa10.57□□□□□ -0.72
CCDC40-216ENST00000576241 OR8U9P0C7N5 309 aa10.57□□□□□ -0.72
CCDC40-216ENST00000576241 MYL9P24844 172 aa10.57□□□□□ -0.72
CCDC40-216ENST00000576241 HSPA13P48723 471 aa10.57□□□□□ -0.72
CCDC40-216ENST00000576241 LINC00205P59089 165 aa10.57□□□□□ -0.72
CCDC40-216ENST00000576241 PITPNAQ00169 270 aa10.57□□□□□ -0.72
CCDC40-216ENST00000576241 FXYD3Q14802 87 aa10.57□□□□□ -0.72
CCDC40-216ENST00000576241 TBCEQ15813 527 aaPredicted RBP10.57□□□□□ -0.72
CCDC40-216ENST00000576241 ZNF367Q7RTV3 350 aa10.57□□□□□ -0.72
CCDC40-216ENST00000576241 OR6Q1Q8NGQ2 317 aa10.57□□□□□ -0.72
CCDC40-216ENST00000576241 OR2D2Q9H210 308 aa10.57□□□□□ -0.72
CCDC40-216ENST00000576241 TPSG1Q9NRR2 321 aa10.57□□□□□ -0.72
CCDC40-216ENST00000576241 ZNF355PQ9NSJ1 428 aa10.57□□□□□ -0.72
CCDC40-216ENST00000576241 LGALS7P47929 136 aa10.56□□□□□ -0.72
CCDC40-216ENST00000576241 ACSM6Q6P461 480 aa10.56□□□□□ -0.72
CCDC40-216ENST00000576241 OR10R2Q8NGX6 335 aa10.56□□□□□ -0.72
CCDC40-216ENST00000576241 CNBD2Q96M20 576 aa10.56□□□□□ -0.72
CCDC40-216ENST00000576241 HARBI1Q96MB7 349 aa10.56□□□□□ -0.72
CCDC40-216ENST00000576241 OR4C12Q96R67 309 aa10.56□□□□□ -0.72
CCDC40-216ENST00000576241 CABLES2Q9BTV7 478 aa10.56□□□□□ -0.72
CCDC40-216ENST00000576241 KCNK7Q9Y2U2 307 aa10.56□□□□□ -0.72
CCDC40-216ENST00000576241 RBM7Q9Y580 266 aaKnown RBP10.56□□□□□ -0.72
CCDC40-216ENST00000576241 DNAH7Q8WXX0 4024 aa10.55□□□□□ -0.72
CCDC40-216ENST00000576241 A0A075B6Q4 140 aa10.55□□□□□ -0.72
CCDC40-216ENST00000576241 TRAV1-2A0A0B4J238 106 aa10.55□□□□□ -0.72
CCDC40-216ENST00000576241 C13orf42A0A1B0GVH6 325 aa10.55□□□□□ -0.72
CCDC40-216ENST00000576241 IFITM5A6NNB3 132 aa10.55□□□□□ -0.72
CCDC40-216ENST00000576241 H3BUA1 57 aa10.55□□□□□ -0.72
CCDC40-216ENST00000576241 DIRAS3O95661 229 aa10.55□□□□□ -0.72
CCDC40-216ENST00000576241 SPNP16150 400 aa10.55□□□□□ -0.72
CCDC40-216ENST00000576241 HIST1H1DP16402 221 aaKnown RBP10.55□□□□□ -0.72
CCDC40-216ENST00000576241 TALDO1P37837 337 aa10.55□□□□□ -0.72
CCDC40-216ENST00000576241 OR10A3P58181 314 aa10.55□□□□□ -0.72
CCDC40-216ENST00000576241 TAGLNQ01995 201 aaKnown RBP10.55□□□□□ -0.72
CCDC40-216ENST00000576241 PLA2G7Q13093 441 aa10.55□□□□□ -0.72
CCDC40-216ENST00000576241 RTL8BQ17RB0 113 aa10.55□□□□□ -0.72
CCDC40-216ENST00000576241 IGSF11Q5DX21 431 aa10.55□□□□□ -0.72
CCDC40-216ENST00000576241 IZUMO2Q6UXV1 221 aa10.55□□□□□ -0.72
CCDC40-216ENST00000576241 POC5Q8NA72 575 aa10.55□□□□□ -0.72
CCDC40-216ENST00000576241 RHOVQ96L33 236 aa10.55□□□□□ -0.72
CCDC40-216ENST00000576241 GINS4Q9BRT9 223 aa10.55□□□□□ -0.72
CCDC40-216ENST00000576241 ELOVL1Q9BW60 279 aa10.55□□□□□ -0.72
CCDC40-216ENST00000576241 CSMD3Q7Z407 3707 aa10.55□□□□□ -0.72
CCDC40-216ENST00000576241 HERC2O95714 4834 aa10.54□□□□□ -0.72
CCDC40-216ENST00000576241 TRBV6-7A0A0A0MS04 114 aa10.54□□□□□ -0.72
CCDC40-216ENST00000576241 A0A0G2JLM5 398 aa10.54□□□□□ -0.72
CCDC40-216ENST00000576241 METTL21EPA6NDL7 271 aa10.54□□□□□ -0.72
CCDC40-216ENST00000576241 GSTT2P0CG29 244 aa10.54□□□□□ -0.72
CCDC40-216ENST00000576241 GSTT2BP0CG30 244 aa10.54□□□□□ -0.72
CCDC40-216ENST00000576241 SNRPBP14678 240 aaKnown RBP10.54□□□□□ -0.72
CCDC40-216ENST00000576241 GP9P14770 177 aa10.54□□□□□ -0.72
CCDC40-216ENST00000576241 GNB3P16520 340 aa10.54□□□□□ -0.72
CCDC40-216ENST00000576241 RAB3BP20337 219 aa10.54□□□□□ -0.72
CCDC40-216ENST00000576241 RAB6AP20340 208 aa10.54□□□□□ -0.72
CCDC40-216ENST00000576241 ARFRP1Q13795 201 aa10.54□□□□□ -0.72
CCDC40-216ENST00000576241 SSX1Q16384 188 aa10.54□□□□□ -0.72
CCDC40-216ENST00000576241 MOGAT2Q3SYC2 334 aa10.54□□□□□ -0.72
CCDC40-216ENST00000576241 OR5T1Q8NG75 326 aa10.54□□□□□ -0.72
CCDC40-216ENST00000576241 MAFIPQ8WZ33 124 aa10.54□□□□□ -0.72
CCDC40-216ENST00000576241 CENPOQ9BU64 300 aa10.54□□□□□ -0.72
CCDC40-216ENST00000576241 NDUFB11Q9NX14 153 aa10.54□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms