RNA–Protein interactions for RNA: ENST00000572253.5

CCDC40-207, Transcript of coiled-coil domain containing 40, humanhuman

TSL 2

Gene CCDC40, Length 3,962 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-207ENST00000572253 RAMP3O60896 148 aa9.05□□□□□ -0.96
CCDC40-207ENST00000572253 TYMSP04818 313 aa9.05□□□□□ -0.96
CCDC40-207ENST00000572253 RNF224P0DH78 156 aa9.05□□□□□ -0.96
CCDC40-207ENST00000572253 FAM78BQ5VT40 261 aa9.05□□□□□ -0.96
CCDC40-207ENST00000572253 FBXW9Q5XUX1 488 aa9.05□□□□□ -0.96
CCDC40-207ENST00000572253 TIPARPQ7Z3E1 657 aaKnown RBP9.05□□□□□ -0.96
CCDC40-207ENST00000572253 MAFAQ8NHW3 353 aaPredicted RBP9.05□□□□□ -0.96
CCDC40-207ENST00000572253 GATAD1Q8WUU5 269 aa9.05□□□□□ -0.96
CCDC40-207ENST00000572253 A0A0U1RQK1 487 aa9.05□□□□□ -0.96
CCDC40-207ENST00000572253 ZNF320A2RRD8 509 aa9.05□□□□□ -0.96
CCDC40-207ENST00000572253 A8MWP6 167 aa9.05□□□□□ -0.96
CCDC40-207ENST00000572253 CNN1P51911 297 aaKnown RBP9.05□□□□□ -0.96
CCDC40-207ENST00000572253 RAB4BP61018 213 aa9.05□□□□□ -0.96
CCDC40-207ENST00000572253 RPS16P62249 146 aaKnown RBP9.05□□□□□ -0.96
CCDC40-207ENST00000572253 TGFBR3Q03167 851 aa9.05□□□□□ -0.96
CCDC40-207ENST00000572253 SLC10A1Q14973 349 aa9.05□□□□□ -0.96
CCDC40-207ENST00000572253 C3AR1Q16581 482 aa9.05□□□□□ -0.96
CCDC40-207ENST00000572253 LINC00696Q6ZRV3 163 aa9.05□□□□□ -0.96
CCDC40-207ENST00000572253 LAMA1P25391 3075 aa9.04□□□□□ -0.96
CCDC40-207ENST00000572253 TPRP12270 2363 aaKnown RBP9.04□□□□□ -0.96
CCDC40-207ENST00000572253 AHCTF1Q8WYP5 2266 aa9.04□□□□□ -0.96
CCDC40-207ENST00000572253 C12orf77C9JDV5 145 aa9.04□□□□□ -0.96
CCDC40-207ENST00000572253 F6UZH7 168 aa9.04□□□□□ -0.96
CCDC40-207ENST00000572253 CD99P14209 185 aa9.04□□□□□ -0.96
CCDC40-207ENST00000572253 PDLIM4P50479 330 aa9.04□□□□□ -0.96
CCDC40-207ENST00000572253 BEND2Q8NDZ0 799 aa9.04□□□□□ -0.96
CCDC40-207ENST00000572253 OR52L2PQ8NGH6 319 aa9.04□□□□□ -0.96
CCDC40-207ENST00000572253 OBP2BQ9NPH6 170 aa9.04□□□□□ -0.96
CCDC40-207ENST00000572253 KLF13Q9Y2Y9 288 aaPredicted RBP9.04□□□□□ -0.96
CCDC40-207ENST00000572253 TRAPPC1Q9Y5R8 145 aa9.04□□□□□ -0.96
CCDC40-207ENST00000572253 SPTA1P02549 2419 aa9.04□□□□□ -0.96
CCDC40-207ENST00000572253 HBZP02008 142 aa9.04□□□□□ -0.96
CCDC40-207ENST00000572253 GABRA2P47869 451 aa9.04□□□□□ -0.96
CCDC40-207ENST00000572253 SLC35E4Q6ICL7 350 aa9.04□□□□□ -0.96
CCDC40-207ENST00000572253 ZNF664Q8N3J9 261 aa9.04□□□□□ -0.96
CCDC40-207ENST00000572253 OR2J1Q9GZK6 312 aa9.04□□□□□ -0.96
CCDC40-207ENST00000572253 PLA2G3Q9NZ20 509 aa9.04□□□□□ -0.96
CCDC40-207ENST00000572253 R4GN57 208 aa9.04□□□□□ -0.96
CCDC40-207ENST00000572253 IGHV3-64DA0A0J9YX35 117 aa9.04□□□□□ -0.96
CCDC40-207ENST00000572253 MDFIC2A0A1B0GVS7 189 aa9.04□□□□□ -0.96
CCDC40-207ENST00000572253 GNB2P62879 340 aa9.04□□□□□ -0.96
CCDC40-207ENST00000572253 RPL30P62888 115 aaKnown RBP9.04□□□□□ -0.96
CCDC40-207ENST00000572253 WDR86Q86TI4 376 aa9.04□□□□□ -0.96
CCDC40-207ENST00000572253 DDA1Q9BW61 102 aa9.04□□□□□ -0.96
CCDC40-207ENST00000572253 DNAJC13O75165 2243 aa9.03□□□□□ -0.96
CCDC40-207ENST00000572253 C17orf98A8MV24 154 aa9.03□□□□□ -0.96
CCDC40-207ENST00000572253 KLRC4-KLRK1H3BQV0 150 aa9.03□□□□□ -0.96
CCDC40-207ENST00000572253 SCGB1D1O95968 90 aa9.03□□□□□ -0.96
CCDC40-207ENST00000572253 MPLP40238 635 aa9.03□□□□□ -0.96
CCDC40-207ENST00000572253 UNQ6494/PRO21346Q6UXR6 183 aa9.03□□□□□ -0.96
CCDC40-207ENST00000572253 ZDHHC16Q969W1 377 aa9.03□□□□□ -0.96
CCDC40-207ENST00000572253 HSD17B10Q99714 261 aaKnown RBP9.03□□□□□ -0.96
CCDC40-207ENST00000572253 TP53TG5Q9Y2B4 290 aa9.03□□□□□ -0.96
CCDC40-207ENST00000572253 CBY1Q9Y3M2 126 aa9.03□□□□□ -0.96
CCDC40-207ENST00000572253 ZDBF2Q9HCK1 2354 aa9.03□□□□□ -0.96
CCDC40-207ENST00000572253 IL18BPO95998 194 aa9.03□□□□□ -0.96
CCDC40-207ENST00000572253 UBE2G2P60604 165 aa9.03□□□□□ -0.96
CCDC40-207ENST00000572253 BTNL3Q6UXE8 466 aa9.03□□□□□ -0.96
CCDC40-207ENST00000572253 VASH2Q86V25 355 aa9.03□□□□□ -0.96
CCDC40-207ENST00000572253 KCNIP2Q9NS61 270 aa9.03□□□□□ -0.96
CCDC40-207ENST00000572253 KIAA2026Q5HYC2 2103 aa9.03□□□□□ -0.96
CCDC40-207ENST00000572253 ST8SIA5O15466 376 aa9.03□□□□□ -0.96
CCDC40-207ENST00000572253 LAMTOR5O43504 91 aa9.03□□□□□ -0.96
CCDC40-207ENST00000572253 SMPD2O60906 423 aa9.03□□□□□ -0.96
CCDC40-207ENST00000572253 P0C879 139 aa9.03□□□□□ -0.96
CCDC40-207ENST00000572253 NDUFB7P17568 137 aa9.03□□□□□ -0.96
CCDC40-207ENST00000572253 MEOX1P50221 254 aa9.03□□□□□ -0.96
CCDC40-207ENST00000572253 PDLIM3Q53GG5 364 aaPredicted RBP9.03□□□□□ -0.96
CCDC40-207ENST00000572253 MYPOPQ86VE0 399 aaPredicted RBP9.03□□□□□ -0.96
CCDC40-207ENST00000572253 UBALD2Q8IYN6 164 aa9.03□□□□□ -0.96
CCDC40-207ENST00000572253 SLC25A40Q8TBP6 338 aa9.03□□□□□ -0.96
CCDC40-207ENST00000572253 DOCK7Q96N67 2140 aa9.03□□□□□ -0.96
CCDC40-207ENST00000572253 TXNDC17Q9BRA2 123 aa9.03□□□□□ -0.96
CCDC40-207ENST00000572253 MPDU1O75352 247 aa9.02□□□□□ -0.97
CCDC40-207ENST00000572253 VWC2Q2TAL6 325 aa9.02□□□□□ -0.97
CCDC40-207ENST00000572253 SPINK9Q5DT21 86 aa9.02□□□□□ -0.97
CCDC40-207ENST00000572253 TMEM164Q5U3C3 297 aa9.02□□□□□ -0.97
CCDC40-207ENST00000572253 MRGPRDQ8TDS7 321 aa9.02□□□□□ -0.97
CCDC40-207ENST00000572253 IMMP2LQ96T52 175 aa9.02□□□□□ -0.97
CCDC40-207ENST00000572253 GP6Q9HCN6 339 aa9.02□□□□□ -0.97
CCDC40-207ENST00000572253 PMS2P5A8MQ11 134 aa9.02□□□□□ -0.97
CCDC40-207ENST00000572253 C1QTNF9BB2RNN3 333 aa9.02□□□□□ -0.97
CCDC40-207ENST00000572253 CRYAAP02489 173 aa9.02□□□□□ -0.97
CCDC40-207ENST00000572253 PAX1P15863 534 aa9.02□□□□□ -0.97
CCDC40-207ENST00000572253 CD1BP29016 333 aa9.02□□□□□ -0.97
CCDC40-207ENST00000572253 CEBPDP49716 269 aaPredicted RBP9.02□□□□□ -0.97
CCDC40-207ENST00000572253 PAX5Q02548 391 aa9.02□□□□□ -0.97
CCDC40-207ENST00000572253 AESQ08117 197 aa9.02□□□□□ -0.97
CCDC40-207ENST00000572253 FKBP11Q9NYL4 201 aa9.02□□□□□ -0.97
CCDC40-207ENST00000572253 WDR83OSQ9Y284 106 aa9.02□□□□□ -0.97
CCDC40-207ENST00000572253 ESPL1Q14674 2120 aa9.02□□□□□ -0.97
CCDC40-207ENST00000572253 DOCK10Q96BY6 2186 aa9.02□□□□□ -0.97
CCDC40-207ENST00000572253 CEP250Q9BV73 2442 aa9.02□□□□□ -0.97
CCDC40-207ENST00000572253 SPINT2O43291 252 aa9.02□□□□□ -0.97
CCDC40-207ENST00000572253 KITLGP21583 273 aa9.02□□□□□ -0.97
CCDC40-207ENST00000572253 IL3RAP26951 378 aa9.02□□□□□ -0.97
CCDC40-207ENST00000572253 EDDM3BP56851 147 aa9.02□□□□□ -0.97
CCDC40-207ENST00000572253 WDR31Q8NA23 367 aa9.02□□□□□ -0.97
CCDC40-207ENST00000572253 MISP3Q96FF7 219 aa9.02□□□□□ -0.97
CCDC40-207ENST00000572253 DIDO1Q9BTC0 2240 aaKnown RBP9.02□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms