RNA–Protein interactions for RNA: ENST00000570062.1

VPS39-213, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 842 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-213ENST00000570062 LRRC37A5PQ49AS3 106 aa6.57□□□□□ -1.36
VPS39-213ENST00000570062 NMSQ5H8A3 153 aa6.57□□□□□ -1.36
VPS39-213ENST00000570062 LAMTOR1Q6IAA8 161 aa6.57□□□□□ -1.36
VPS39-213ENST00000570062 TEX261Q6UWH6 196 aa6.57□□□□□ -1.36
VPS39-213ENST00000570062 SLC25A48Q6ZT89 311 aaKnown RBP6.57□□□□□ -1.36
VPS39-213ENST00000570062 SPAG16Q8N0X2 631 aa6.57□□□□□ -1.36
VPS39-213ENST00000570062 FGFRL1Q8N441 504 aa6.57□□□□□ -1.36
VPS39-213ENST00000570062 OR4D5Q8NGN0 318 aa6.57□□□□□ -1.36
VPS39-213ENST00000570062 OR4S2Q8NH73 311 aa6.57□□□□□ -1.36
VPS39-213ENST00000570062 OR9G1Q8NH87 305 aa6.57□□□□□ -1.36
VPS39-213ENST00000570062 ZNF596Q8TC21 504 aa6.57□□□□□ -1.36
VPS39-213ENST00000570062 TCTEX1D2Q8WW35 142 aa6.57□□□□□ -1.36
VPS39-213ENST00000570062 CYYR1Q96J86 154 aa6.57□□□□□ -1.36
VPS39-213ENST00000570062 OR10C1Q96KK4 312 aa6.57□□□□□ -1.36
VPS39-213ENST00000570062 RAB40CQ96S21 281 aa6.57□□□□□ -1.36
VPS39-213ENST00000570062 ARPC5LQ9BPX5 153 aa6.57□□□□□ -1.36
VPS39-213ENST00000570062 ARL6Q9H0F7 186 aa6.57□□□□□ -1.36
VPS39-213ENST00000570062 PATZ1Q9HBE1 687 aaKnown RBP6.57□□□□□ -1.36
VPS39-213ENST00000570062 ZC4H2Q9NQZ6 224 aa6.57□□□□□ -1.36
VPS39-213ENST00000570062 SDHAF2Q9NX18 166 aa6.57□□□□□ -1.36
VPS39-213ENST00000570062 AMMECR1Q9Y4X0 333 aaPredicted RBP6.57□□□□□ -1.36
VPS39-213ENST00000570062 SESN1Q9Y6P5 492 aa6.57□□□□□ -1.36
VPS39-213ENST00000570062 U3KQ87 197 aa6.57□□□□□ -1.36
VPS39-213ENST00000570062 MYO7BQ6PIF6 2116 aa6.56□□□□□ -1.36
VPS39-213ENST00000570062 DOPEY2Q9Y3R5 2298 aa6.56□□□□□ -1.36
VPS39-213ENST00000570062 SPENQ96T58 3664 aaKnown RBP6.56□□□□□ -1.36
VPS39-213ENST00000570062 M0R1W7 72 aa6.56□□□□□ -1.36
VPS39-213ENST00000570062 OVOL3O00110 214 aa6.56□□□□□ -1.36
VPS39-213ENST00000570062 TNFSF12O43508 249 aa6.56□□□□□ -1.36
VPS39-213ENST00000570062 BCL2L11O43521 198 aa6.56□□□□□ -1.36
VPS39-213ENST00000570062 JTBO76095 146 aa6.56□□□□□ -1.36
VPS39-213ENST00000570062 COX6B1P14854 86 aa6.56□□□□□ -1.36
VPS39-213ENST00000570062 ZNF16P17020 682 aaPredicted RBP6.56□□□□□ -1.36
VPS39-213ENST00000570062 MC5RP33032 325 aa6.56□□□□□ -1.36
VPS39-213ENST00000570062 DUTP33316 252 aaKnown RBP6.56□□□□□ -1.36
VPS39-213ENST00000570062 LPAR6P43657 344 aa6.56□□□□□ -1.36
VPS39-213ENST00000570062 PDLIM4P50479 330 aa6.56□□□□□ -1.36
VPS39-213ENST00000570062 ERVFRD-1P60508 538 aa6.56□□□□□ -1.36
VPS39-213ENST00000570062 S100A10P60903 97 aa6.56□□□□□ -1.36
VPS39-213ENST00000570062 RPL23AP62750 156 aaKnown RBP6.56□□□□□ -1.36
VPS39-213ENST00000570062 GNB2P62879 340 aa6.56□□□□□ -1.36
VPS39-213ENST00000570062 UBA52P62987 128 aaKnown RBP6.56□□□□□ -1.36
VPS39-213ENST00000570062 RPP30P78346 268 aaKnown RBP6.56□□□□□ -1.36
VPS39-213ENST00000570062 BAXQ07812 192 aa6.56□□□□□ -1.36
VPS39-213ENST00000570062 RAB32Q13637 225 aa6.56□□□□□ -1.36
VPS39-213ENST00000570062 RTL8BQ17RB0 113 aa6.56□□□□□ -1.36
VPS39-213ENST00000570062 Q5BKY6 102 aa6.56□□□□□ -1.36
VPS39-213ENST00000570062 CT45A1Q5HYN5 189 aa6.56□□□□□ -1.36
VPS39-213ENST00000570062 WDR25Q64LD2 544 aaPredicted RBP6.56□□□□□ -1.36
VPS39-213ENST00000570062 H2BFWTQ7Z2G1 175 aa6.56□□□□□ -1.36
VPS39-213ENST00000570062 KIR3DL3Q8N743 410 aa6.56□□□□□ -1.36
VPS39-213ENST00000570062 OR8H1Q8NGG4 311 aa6.56□□□□□ -1.36
VPS39-213ENST00000570062 OR13D1Q8NGV5 346 aa6.56□□□□□ -1.36
VPS39-213ENST00000570062 OR1S1Q8NH92 325 aa6.56□□□□□ -1.36
VPS39-213ENST00000570062 CT45A3Q8NHU0 189 aa6.56□□□□□ -1.36
VPS39-213ENST00000570062 CIB3Q96Q77 187 aaPredicted RBP6.56□□□□□ -1.36
VPS39-213ENST00000570062 CLCC1Q96S66 551 aa6.56□□□□□ -1.36
VPS39-213ENST00000570062 PCGF1Q9BSM1 259 aa6.56□□□□□ -1.36
VPS39-213ENST00000570062 RNF126Q9BV68 326 aa6.56□□□□□ -1.36
VPS39-213ENST00000570062 HEXA-AS1Q9H8Q6 139 aa6.56□□□□□ -1.36
VPS39-213ENST00000570062 CTNNBIP1Q9NSA3 81 aaPredicted RBP6.56□□□□□ -1.36
VPS39-213ENST00000570062 C19orf12Q9NSK7 152 aa6.56□□□□□ -1.36
VPS39-213ENST00000570062 MBD2Q9UBB5 411 aa6.56□□□□□ -1.36
VPS39-213ENST00000570062 UBQLN2Q9UHD9 624 aa6.56□□□□□ -1.36
VPS39-213ENST00000570062 RNF150Q9ULK6 438 aa6.56□□□□□ -1.36
VPS39-213ENST00000570062 HEATR1Q9H583 2144 aaKnown RBP6.56□□□□□ -1.36
VPS39-213ENST00000570062 FBN3Q75N90 2809 aa6.56□□□□□ -1.36
VPS39-213ENST00000570062 NOTCH2Q04721 2471 aa6.55□□□□□ -1.36
VPS39-213ENST00000570062 BORCS7-ASMTA0A0B4J1R7 106 aa6.55□□□□□ -1.36
VPS39-213ENST00000570062 PPIAL4CA0A0B4J2A2 164 aa6.55□□□□□ -1.36
VPS39-213ENST00000570062 F5H0A9 414 aaPredicted RBP6.55□□□□□ -1.36
VPS39-213ENST00000570062 M0R1X1 148 aa6.55□□□□□ -1.36
VPS39-213ENST00000570062 TSC22D2O75157 780 aa6.55□□□□□ -1.36
VPS39-213ENST00000570062 PITX3O75364 302 aa6.55□□□□□ -1.36
VPS39-213ENST00000570062 APOA2P02652 100 aa6.55□□□□□ -1.36
VPS39-213ENST00000570062 MBPP02686 304 aaPredicted RBP6.55□□□□□ -1.36
VPS39-213ENST00000570062 FGF2P09038 288 aa6.55□□□□□ -1.36
VPS39-213ENST00000570062 PPIAL4GP0DN37 164 aa6.55□□□□□ -1.36
VPS39-213ENST00000570062 IGHV1-8P0DP01 117 aa6.55□□□□□ -1.36
VPS39-213ENST00000570062 TPT1P13693 172 aaKnown RBP6.55□□□□□ -1.36
VPS39-213ENST00000570062 PAX1P15863 534 aa6.55□□□□□ -1.36
VPS39-213ENST00000570062 NQO2P16083 231 aa6.55□□□□□ -1.36
VPS39-213ENST00000570062 CXCL2P19875 107 aa6.55□□□□□ -1.36
VPS39-213ENST00000570062 RPL12P30050 165 aaKnown RBP6.55□□□□□ -1.36
VPS39-213ENST00000570062 RAB13P51153 203 aa6.55□□□□□ -1.36
VPS39-213ENST00000570062 ZNF137PP52743 207 aa6.55□□□□□ -1.36
VPS39-213ENST00000570062 ATP5IP56385 69 aaPredicted RBP6.55□□□□□ -1.36
VPS39-213ENST00000570062 RIPPLY3P57055 190 aa6.55□□□□□ -1.36
VPS39-213ENST00000570062 LTC4SQ16873 150 aa6.55□□□□□ -1.36
VPS39-213ENST00000570062 MIDNQ504T8 468 aa6.55□□□□□ -1.36
VPS39-213ENST00000570062 ZNF585BQ52M93 769 aa6.55□□□□□ -1.36
VPS39-213ENST00000570062 LYPD2Q6UXB3 125 aa6.55□□□□□ -1.36
VPS39-213ENST00000570062 ZNF841Q6ZN19 808 aa6.55□□□□□ -1.36
VPS39-213ENST00000570062 LYG1Q8N1E2 194 aa6.55□□□□□ -1.36
VPS39-213ENST00000570062 ZNF439Q8NDP4 499 aa6.55□□□□□ -1.36
VPS39-213ENST00000570062 LY6G5BQ8NDX9 201 aa6.55□□□□□ -1.36
VPS39-213ENST00000570062 BEND2Q8NDZ0 799 aa6.55□□□□□ -1.36
VPS39-213ENST00000570062 OR10X1Q8NGY0 326 aa6.55□□□□□ -1.36
VPS39-213ENST00000570062 VSTM2AQ8TAG5 236 aa6.55□□□□□ -1.36
VPS39-213ENST00000570062 OSR1Q8TAX0 266 aaPredicted RBP6.55□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms