RNA–Protein interactions for RNA: ENST00000569950.1

VPS35-211, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 1,096 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-211ENST00000569950 Q6ZS46 218 aa7.41□□□□□ -1.22
VPS35-211ENST00000569950 TMEM17Q86X19 198 aa7.41□□□□□ -1.22
VPS35-211ENST00000569950 TMEM219Q86XT9 240 aa7.41□□□□□ -1.22
VPS35-211ENST00000569950 OR6F1Q8NGZ6 308 aa7.41□□□□□ -1.22
VPS35-211ENST00000569950 TERB2Q8NHR7 220 aa7.41□□□□□ -1.22
VPS35-211ENST00000569950 MARCH1Q8TCQ1 289 aa7.41□□□□□ -1.22
VPS35-211ENST00000569950 SECTM1Q8WVN6 248 aa7.41□□□□□ -1.22
VPS35-211ENST00000569950 TMEM230Q96A57 120 aa7.41□□□□□ -1.22
VPS35-211ENST00000569950 EAF1Q96JC9 268 aaPredicted RBP7.41□□□□□ -1.22
VPS35-211ENST00000569950 RTBDNQ9BSG5 229 aaPredicted RBP7.41□□□□□ -1.22
VPS35-211ENST00000569950 SLC5A7Q9GZV3 580 aa7.41□□□□□ -1.22
VPS35-211ENST00000569950 C5orf66Q9H5L9 145 aa7.41□□□□□ -1.22
VPS35-211ENST00000569950 GPR132Q9UNW8 380 aa7.41□□□□□ -1.22
VPS35-211ENST00000569950 A0A0A6YYJ9 748 aa7.4□□□□□ -1.22
VPS35-211ENST00000569950 SRRM4A7MD48 611 aaKnown RBP7.4□□□□□ -1.22
VPS35-211ENST00000569950 GPR137BO60478 399 aa7.4□□□□□ -1.22
VPS35-211ENST00000569950 PGLYRP1O75594 196 aaPredicted RBP7.4□□□□□ -1.22
VPS35-211ENST00000569950 UPK1BO75841 260 aa7.4□□□□□ -1.22
VPS35-211ENST00000569950 IGKV1D-33P01593 117 aa7.4□□□□□ -1.22
VPS35-211ENST00000569950 IGKV1-33P01594 117 aa7.4□□□□□ -1.22
VPS35-211ENST00000569950 PI3P19957 117 aa7.4□□□□□ -1.22
VPS35-211ENST00000569950 F2RL1P55085 397 aa7.4□□□□□ -1.22
VPS35-211ENST00000569950 SSBP2P81877 361 aaPredicted RBP7.4□□□□□ -1.22
VPS35-211ENST00000569950 ZNF846Q147U1 533 aa7.4□□□□□ -1.22
VPS35-211ENST00000569950 CCDC144NLQ6NUI1 221 aa7.4□□□□□ -1.22
VPS35-211ENST00000569950 MOB3BQ86TA1 216 aa7.4□□□□□ -1.22
VPS35-211ENST00000569950 TOMM5Q8N4H5 51 aa7.4□□□□□ -1.22
VPS35-211ENST00000569950 ZNF418Q8TF45 676 aaPredicted RBP7.4□□□□□ -1.22
VPS35-211ENST00000569950 DEDD2Q8WXF8 326 aa7.4□□□□□ -1.22
VPS35-211ENST00000569950 S1PR3Q99500 378 aa7.4□□□□□ -1.22
VPS35-211ENST00000569950 WDR12Q9GZL7 423 aaKnown RBP7.4□□□□□ -1.22
VPS35-211ENST00000569950 ZNF221Q9UK13 617 aa7.4□□□□□ -1.22
VPS35-211ENST00000569950 VSIG4Q9Y279 399 aa7.4□□□□□ -1.22
VPS35-211ENST00000569950 TNFSF12O43508 249 aa7.39□□□□□ -1.23
VPS35-211ENST00000569950 TCF21O43680 179 aa7.39□□□□□ -1.23
VPS35-211ENST00000569950 RAMP3O60896 148 aa7.39□□□□□ -1.23
VPS35-211ENST00000569950 CRYGBP07316 175 aa7.39□□□□□ -1.23
VPS35-211ENST00000569950 CCR6P51684 374 aa7.39□□□□□ -1.23
VPS35-211ENST00000569950 HERV-K104P61576 105 aa7.39□□□□□ -1.23
VPS35-211ENST00000569950 RND3P61587 244 aa7.39□□□□□ -1.23
VPS35-211ENST00000569950 TSPAN5P62079 268 aa7.39□□□□□ -1.23
VPS35-211ENST00000569950 ASAH1Q13510 395 aa7.39□□□□□ -1.23
VPS35-211ENST00000569950 KRTAP24-1Q3LI83 254 aa7.39□□□□□ -1.23
VPS35-211ENST00000569950 ZNF585BQ52M93 769 aa7.39□□□□□ -1.23
VPS35-211ENST00000569950 TMEM177Q53S58 311 aa7.39□□□□□ -1.23
VPS35-211ENST00000569950 IDO2Q6ZQW0 420 aa7.39□□□□□ -1.23
VPS35-211ENST00000569950 FAM71E2Q8N5Q1 922 aa7.39□□□□□ -1.23
VPS35-211ENST00000569950 Q8N9W7 124 aa7.39□□□□□ -1.23
VPS35-211ENST00000569950 ADAD2Q8NCV1 583 aaKnown RBP7.39□□□□□ -1.23
VPS35-211ENST00000569950 OR5R1Q8NH85 324 aa7.39□□□□□ -1.23
VPS35-211ENST00000569950 AKR1E2Q96JD6 320 aa7.39□□□□□ -1.23
VPS35-211ENST00000569950 RBM14Q96PK6 669 aaKnown RBP7.39□□□□□ -1.23
VPS35-211ENST00000569950 ABCB10Q9NRK6 738 aa7.39□□□□□ -1.23
VPS35-211ENST00000569950 SLC2A9Q9NRM0 540 aa7.39□□□□□ -1.23
VPS35-211ENST00000569950 TNFRSF19Q9NS68 423 aa7.39□□□□□ -1.23
VPS35-211ENST00000569950 DNHD1Q96M86 4753 aa7.38□□□□□ -1.23
VPS35-211ENST00000569950 LINC00854A0A1B0GVQ3 168 aa7.38□□□□□ -1.23
VPS35-211ENST00000569950 FAM181BA6NEQ2 426 aa7.38□□□□□ -1.23
VPS35-211ENST00000569950 SH2D7A6NKC9 451 aaPredicted RBP7.38□□□□□ -1.23
VPS35-211ENST00000569950 DISC1C4P0D8 188 aa7.38□□□□□ -1.23
VPS35-211ENST00000569950 GPR31O00270 319 aa7.38□□□□□ -1.23
VPS35-211ENST00000569950 SLC22A5O76082 557 aa7.38□□□□□ -1.23
VPS35-211ENST00000569950 OR2F2O95006 317 aa7.38□□□□□ -1.23
VPS35-211ENST00000569950 NDUFA3O95167 84 aa7.38□□□□□ -1.23
VPS35-211ENST00000569950 IGKV1-39P01597 117 aa7.38□□□□□ -1.23
VPS35-211ENST00000569950 IGKV1D-39P04432 117 aa7.38□□□□□ -1.23
VPS35-211ENST00000569950 RLN1P04808 185 aa7.38□□□□□ -1.23
VPS35-211ENST00000569950 CTSDP07339 412 aaPredicted RBP7.38□□□□□ -1.23
VPS35-211ENST00000569950 IL6RP08887 468 aaPredicted RBP7.38□□□□□ -1.23
VPS35-211ENST00000569950 SLC6A1P30531 599 aa7.38□□□□□ -1.23
VPS35-211ENST00000569950 BRS3P32247 399 aa7.38□□□□□ -1.23
VPS35-211ENST00000569950 THBS3P49746 956 aa7.38□□□□□ -1.23
VPS35-211ENST00000569950 BLCAPP62952 87 aa7.38□□□□□ -1.23
VPS35-211ENST00000569950 SUPT4H1P63272 117 aaKnown RBP7.38□□□□□ -1.23
VPS35-211ENST00000569950 SCGB2A2Q13296 93 aa7.38□□□□□ -1.23
VPS35-211ENST00000569950 HNF4GQ14541 408 aa7.38□□□□□ -1.23
VPS35-211ENST00000569950 SURF2Q15527 256 aaPredicted RBP7.38□□□□□ -1.23
VPS35-211ENST00000569950 SCGB2B2Q4G0G5 96 aa7.38□□□□□ -1.23
VPS35-211ENST00000569950 PHLDA2Q53GA4 152 aa7.38□□□□□ -1.23
VPS35-211ENST00000569950 TRIQKQ629K1 86 aa7.38□□□□□ -1.23
VPS35-211ENST00000569950 ZNF57Q68EA5 555 aaPredicted RBP7.38□□□□□ -1.23
VPS35-211ENST00000569950 C16orf87Q6PH81 154 aa7.38□□□□□ -1.23
VPS35-211ENST00000569950 ZNF66Q6ZN08 573 aa7.38□□□□□ -1.23
VPS35-211ENST00000569950 SLC38A6Q8IZM9 456 aa7.38□□□□□ -1.23
VPS35-211ENST00000569950 Q8N2B8 174 aa7.38□□□□□ -1.23
VPS35-211ENST00000569950 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP7.38□□□□□ -1.23
VPS35-211ENST00000569950 C5orf56Q8N8D9 126 aa7.38□□□□□ -1.23
VPS35-211ENST00000569950 ZBTB34Q8NCN2 500 aa7.38□□□□□ -1.23
VPS35-211ENST00000569950 NPBQ8NG41 125 aa7.38□□□□□ -1.23
VPS35-211ENST00000569950 CAPSLQ8WWF8 208 aa7.38□□□□□ -1.23
VPS35-211ENST00000569950 HSD17B10Q99714 261 aaKnown RBP7.38□□□□□ -1.23
VPS35-211ENST00000569950 PRRT1Q99946 306 aa7.38□□□□□ -1.23
VPS35-211ENST00000569950 DPAGT1Q9H3H5 408 aa7.38□□□□□ -1.23
VPS35-211ENST00000569950 TPSG1Q9NRR2 321 aa7.38□□□□□ -1.23
VPS35-211ENST00000569950 C1RLQ9NZP8 487 aa7.38□□□□□ -1.23
VPS35-211ENST00000569950 WASHC3Q9Y3C0 194 aa7.38□□□□□ -1.23
VPS35-211ENST00000569950 PKD1L1Q8TDX9 2849 aa7.37□□□□□ -1.23
VPS35-211ENST00000569950 RBFOX2O43251 390 aaKnown RBP eCLIP7.37□□□□□ -1.23
VPS35-211ENST00000569950 LYRM1O43325 122 aa7.37□□□□□ -1.23
VPS35-211ENST00000569950 NDUFB6O95139 128 aa7.37□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms