RNA–Protein interactions for RNA: ENST00000569080.1

CDH3-209, Transcript of cadherin 3, humanhuman

TSL 5

Gene CDH3, Length 291 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-209ENST00000569080 SDHAF2Q9NX18 166 aa6.07□□□□□ -1.44
CDH3-209ENST00000569080 KIAA1456Q9P272 454 aa6.07□□□□□ -1.44
CDH3-209ENST00000569080 NUBP2Q9Y5Y2 271 aa6.07□□□□□ -1.44
CDH3-209ENST00000569080 DNAH7Q8WXX0 4024 aa6.06□□□□□ -1.44
CDH3-209ENST00000569080 A0A075B6Q4 140 aa6.06□□□□□ -1.44
CDH3-209ENST00000569080 A0A1W2PN81 502 aa6.06□□□□□ -1.44
CDH3-209ENST00000569080 H7C2Y5 167 aa6.06□□□□□ -1.44
CDH3-209ENST00000569080 M0R1X1 148 aa6.06□□□□□ -1.44
CDH3-209ENST00000569080 ARPC1BO15143 372 aaKnown RBP6.06□□□□□ -1.44
CDH3-209ENST00000569080 BET1O15155 118 aa6.06□□□□□ -1.44
CDH3-209ENST00000569080 CA2P00918 260 aa6.06□□□□□ -1.44
CDH3-209ENST00000569080 GSTP1P09211 210 aaKnown RBP6.06□□□□□ -1.44
CDH3-209ENST00000569080 OR8U9P0C7N5 309 aa6.06□□□□□ -1.44
CDH3-209ENST00000569080 GADD45AP24522 165 aa6.06□□□□□ -1.44
CDH3-209ENST00000569080 CHRNA7P36544 502 aa6.06□□□□□ -1.44
CDH3-209ENST00000569080 RAB9AP51151 201 aa6.06□□□□□ -1.44
CDH3-209ENST00000569080 TPRA1Q86W33 373 aa6.06□□□□□ -1.44
CDH3-209ENST00000569080 TCTEX1D1Q8N7M0 179 aa6.06□□□□□ -1.44
CDH3-209ENST00000569080 OR11H1Q8NG94 326 aa6.06□□□□□ -1.44
CDH3-209ENST00000569080 CASTOR1Q8WTX7 329 aa6.06□□□□□ -1.44
CDH3-209ENST00000569080 FAM103A1Q9BTL3 118 aaKnown RBP6.06□□□□□ -1.44
CDH3-209ENST00000569080 ALX4Q9H161 411 aaPredicted RBP6.06□□□□□ -1.44
CDH3-209ENST00000569080 Q9H521 79 aa6.06□□□□□ -1.44
CDH3-209ENST00000569080 METTL1Q9UBP6 276 aaKnown RBP6.06□□□□□ -1.44
CDH3-209ENST00000569080 SCOCQ9UIL1 159 aa6.06□□□□□ -1.44
CDH3-209ENST00000569080 ZNF221Q9UK13 617 aa6.06□□□□□ -1.44
CDH3-209ENST00000569080 FOXA2Q9Y261 457 aaPredicted RBP6.06□□□□□ -1.44
CDH3-209ENST00000569080 VSIG4Q9Y279 399 aa6.06□□□□□ -1.44
CDH3-209ENST00000569080 STAB2Q8WWQ8 2551 aa6.05□□□□□ -1.44
CDH3-209ENST00000569080 METTL21EPA6NDL7 271 aa6.05□□□□□ -1.44
CDH3-209ENST00000569080 TMEM235A6NFC5 223 aa6.05□□□□□ -1.44
CDH3-209ENST00000569080 SRRM4A7MD48 611 aaKnown RBP6.05□□□□□ -1.44
CDH3-209ENST00000569080 LINC00473A8K010 186 aa6.05□□□□□ -1.44
CDH3-209ENST00000569080 SLC25A17O43808 307 aa6.05□□□□□ -1.44
CDH3-209ENST00000569080 SSX5O60225 188 aa6.05□□□□□ -1.44
CDH3-209ENST00000569080 IGLV2-14P01704 120 aa6.05□□□□□ -1.44
CDH3-209ENST00000569080 APOA2P02652 100 aa6.05□□□□□ -1.44
CDH3-209ENST00000569080 LGALS1P09382 135 aaKnown RBP6.05□□□□□ -1.44
CDH3-209ENST00000569080 CLEC2LP0C7M8 214 aa6.05□□□□□ -1.44
CDH3-209ENST00000569080 OR8U8P0C7N1 319 aa6.05□□□□□ -1.44
CDH3-209ENST00000569080 SDC2P34741 201 aa6.05□□□□□ -1.44
CDH3-209ENST00000569080 RAB25P57735 213 aa6.05□□□□□ -1.44
CDH3-209ENST00000569080 MRPS15P82914 257 aaKnown RBP6.05□□□□□ -1.44
CDH3-209ENST00000569080 ZNF616Q08AN1 781 aa6.05□□□□□ -1.44
CDH3-209ENST00000569080 ZNF260Q3ZCT1 412 aa6.05□□□□□ -1.44
CDH3-209ENST00000569080 TMEM177Q53S58 311 aa6.05□□□□□ -1.44
CDH3-209ENST00000569080 HACD4Q5VWC8 232 aa6.05□□□□□ -1.44
CDH3-209ENST00000569080 ZNF562Q6V9R5 426 aa6.05□□□□□ -1.44
CDH3-209ENST00000569080 OR5M8Q8NGP6 311 aa6.05□□□□□ -1.44
CDH3-209ENST00000569080 OR10J5Q8NHC4 309 aa6.05□□□□□ -1.44
CDH3-209ENST00000569080 NUDCD2Q8WVJ2 157 aa6.05□□□□□ -1.44
CDH3-209ENST00000569080 ARPC1AQ92747 370 aa6.05□□□□□ -1.44
CDH3-209ENST00000569080 DPF1Q92782 380 aa6.05□□□□□ -1.44
CDH3-209ENST00000569080 TSNAXQ99598 290 aaKnown RBP6.05□□□□□ -1.44
CDH3-209ENST00000569080 CENPOQ9BU64 300 aa6.05□□□□□ -1.44
CDH3-209ENST00000569080 ATG5Q9H1Y0 275 aa6.05□□□□□ -1.44
CDH3-209ENST00000569080 SLC35D1Q9NTN3 355 aa6.05□□□□□ -1.44
CDH3-209ENST00000569080 RHBDL2Q9NX52 303 aa6.05□□□□□ -1.44
CDH3-209ENST00000569080 DAPK2Q9UIK4 370 aa6.05□□□□□ -1.44
CDH3-209ENST00000569080 A3GALT2U3KPV4 340 aa6.05□□□□□ -1.44
CDH3-209ENST00000569080 TENM3Q9P273 2699 aa6.05□□□□□ -1.44
CDH3-209ENST00000569080 TNCP24821 2201 aa6.05□□□□□ -1.44
CDH3-209ENST00000569080 IGHV4OR15-8A0A075B7B6 117 aa6.04□□□□□ -1.44
CDH3-209ENST00000569080 A0A087WW49 117 aa6.04□□□□□ -1.44
CDH3-209ENST00000569080 IGKV1D-13A0A0B4J2D9 117 aa6.04□□□□□ -1.44
CDH3-209ENST00000569080 SEC14L6B5MCN3 397 aa6.04□□□□□ -1.44
CDH3-209ENST00000569080 IGKV1-13P0DP09 117 aa6.04□□□□□ -1.44
CDH3-209ENST00000569080 DUTP33316 252 aaKnown RBP6.04□□□□□ -1.44
CDH3-209ENST00000569080 SCAND1P57086 179 aa6.04□□□□□ -1.44
CDH3-209ENST00000569080 DGCR2P98153 550 aa6.04□□□□□ -1.44
CDH3-209ENST00000569080 PJVKQ0ZLH3 352 aa6.04□□□□□ -1.44
CDH3-209ENST00000569080 EIF4EBP1Q13541 118 aaPredicted RBP6.04□□□□□ -1.44
CDH3-209ENST00000569080 ARFRP1Q13795 201 aa6.04□□□□□ -1.44
CDH3-209ENST00000569080 ARL6IP1Q15041 203 aa6.04□□□□□ -1.44
CDH3-209ENST00000569080 PLGLAQ15195 96 aa6.04□□□□□ -1.44
CDH3-209ENST00000569080 NEDD8Q15843 81 aa6.04□□□□□ -1.44
CDH3-209ENST00000569080 CDNFQ49AH0 187 aa6.04□□□□□ -1.44
CDH3-209ENST00000569080 AKIRIN2Q53H80 203 aa6.04□□□□□ -1.44
CDH3-209ENST00000569080 ACTBL2Q562R1 376 aa6.04□□□□□ -1.44
CDH3-209ENST00000569080 C9orf66Q5T8R8 295 aa6.04□□□□□ -1.44
CDH3-209ENST00000569080 PYHIN1Q6K0P9 492 aa6.04□□□□□ -1.44
CDH3-209ENST00000569080 C11orf87Q6NUJ2 197 aa6.04□□□□□ -1.44
CDH3-209ENST00000569080 TMEM65Q6PI78 240 aa6.04□□□□□ -1.44
CDH3-209ENST00000569080 PPP1R27Q86WC6 154 aa6.04□□□□□ -1.44
CDH3-209ENST00000569080 LFNGQ8NES3 379 aa6.04□□□□□ -1.44
CDH3-209ENST00000569080 OR1N2Q8NGR9 330 aa6.04□□□□□ -1.44
CDH3-209ENST00000569080 OR5H6Q8NGV6 325 aa6.04□□□□□ -1.44
CDH3-209ENST00000569080 GRPEL2Q8TAA5 225 aa6.04□□□□□ -1.44
CDH3-209ENST00000569080 FLYWCH2Q96CP2 140 aaKnown RBP6.04□□□□□ -1.44
CDH3-209ENST00000569080 HARBI1Q96MB7 349 aa6.04□□□□□ -1.44
CDH3-209ENST00000569080 OR5B12Q96R08 314 aa6.04□□□□□ -1.44
CDH3-209ENST00000569080 CLCC1Q96S66 551 aa6.04□□□□□ -1.44
CDH3-209ENST00000569080 DCSTAMPQ9H295 470 aa6.04□□□□□ -1.44
CDH3-209ENST00000569080 SSR3Q9UNL2 185 aa6.04□□□□□ -1.44
CDH3-209ENST00000569080 RRP15Q9Y3B9 282 aaKnown RBP6.04□□□□□ -1.44
CDH3-209ENST00000569080 LSM4Q9Y4Z0 139 aaKnown RBP6.04□□□□□ -1.44
CDH3-209ENST00000569080 LOC100506127A0A0U1RQW1 187 aa6.03□□□□□ -1.44
CDH3-209ENST00000569080 RAMP3O60896 148 aa6.03□□□□□ -1.44
CDH3-209ENST00000569080 RBMXL2O75526 392 aaKnown RBP6.03□□□□□ -1.44
CDH3-209ENST00000569080 TUSC2O75896 110 aa6.03□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms