RNA–Protein interactions for RNA: ENST00000568605.5

CLK3-224, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 1,047 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-224ENST00000568605 HERV-K104P61576 105 aa10.28□□□□□ -0.76
CLK3-224ENST00000568605 CDK10Q15131 360 aa10.28□□□□□ -0.76
CLK3-224ENST00000568605 KHDC1LQ5JSQ8 128 aa10.28□□□□□ -0.76
CLK3-224ENST00000568605 TREML4Q6UXN2 200 aa10.28□□□□□ -0.76
CLK3-224ENST00000568605 KCTD9Q7L273 389 aa10.28□□□□□ -0.76
CLK3-224ENST00000568605 SNX29P2Q8IUI4 249 aa10.28□□□□□ -0.76
CLK3-224ENST00000568605 STPG2Q8N412 459 aa10.28□□□□□ -0.76
CLK3-224ENST00000568605 ZNF383Q8NA42 475 aa10.28□□□□□ -0.76
CLK3-224ENST00000568605 OR5H2Q8NGV7 314 aa10.28□□□□□ -0.76
CLK3-224ENST00000568605 SNAPC3Q92966 411 aa10.28□□□□□ -0.76
CLK3-224ENST00000568605 ISOC1Q96CN7 298 aa10.28□□□□□ -0.76
CLK3-224ENST00000568605 FLYWCH2Q96CP2 140 aaKnown RBP10.28□□□□□ -0.76
CLK3-224ENST00000568605 EHFQ9NZC4 300 aa10.28□□□□□ -0.76
CLK3-224ENST00000568605 ZNF580Q9UK33 172 aa10.28□□□□□ -0.76
CLK3-224ENST00000568605 RRHO14718 337 aa10.27□□□□□ -0.77
CLK3-224ENST00000568605 TUSC2O75896 110 aa10.27□□□□□ -0.77
CLK3-224ENST00000568605 PPYP01298 95 aa10.27□□□□□ -0.77
CLK3-224ENST00000568605 CD28P10747 220 aa10.27□□□□□ -0.77
CLK3-224ENST00000568605 FCGR2CP31995 323 aa10.27□□□□□ -0.77
CLK3-224ENST00000568605 RCVRNP35243 200 aa10.27□□□□□ -0.77
CLK3-224ENST00000568605 RPS16P62249 146 aaKnown RBP10.27□□□□□ -0.77
CLK3-224ENST00000568605 MSMO1Q15800 293 aa10.27□□□□□ -0.77
CLK3-224ENST00000568605 LIN54Q6MZP7 749 aa10.27□□□□□ -0.77
CLK3-224ENST00000568605 OR4F17Q8NGA8 305 aa10.27□□□□□ -0.77
CLK3-224ENST00000568605 GPX8Q8TED1 209 aa10.27□□□□□ -0.77
CLK3-224ENST00000568605 HARBI1Q96MB7 349 aa10.27□□□□□ -0.77
CLK3-224ENST00000568605 OR4F4Q96R69 305 aa10.27□□□□□ -0.77
CLK3-224ENST00000568605 HSD17B10Q99714 261 aaKnown RBP10.27□□□□□ -0.77
CLK3-224ENST00000568605 CITED2Q99967 270 aaPredicted RBP10.27□□□□□ -0.77
CLK3-224ENST00000568605 RABL2AQ9UBK7 228 aaPredicted RBP10.27□□□□□ -0.77
CLK3-224ENST00000568605 ANAPC10Q9UM13 185 aa10.27□□□□□ -0.77
CLK3-224ENST00000568605 RABL2BQ9UNT1 228 aa10.27□□□□□ -0.77
CLK3-224ENST00000568605 RBMX2Q9Y388 322 aaKnown RBP10.27□□□□□ -0.77
CLK3-224ENST00000568605 PRELID3BQ9Y3B1 194 aa10.27□□□□□ -0.77
CLK3-224ENST00000568605 FBN3Q75N90 2809 aa10.27□□□□□ -0.77
CLK3-224ENST00000568605 J3QRK9 145 aa10.26□□□□□ -0.77
CLK3-224ENST00000568605 SHOXO15266 292 aa10.26□□□□□ -0.77
CLK3-224ENST00000568605 PROP1O75360 226 aa10.26□□□□□ -0.77
CLK3-224ENST00000568605 FCER2P06734 321 aa10.26□□□□□ -0.77
CLK3-224ENST00000568605 NAT1P18440 290 aa10.26□□□□□ -0.77
CLK3-224ENST00000568605 CNTFRP26992 372 aa10.26□□□□□ -0.77
CLK3-224ENST00000568605 DUTP33316 252 aaKnown RBP10.26□□□□□ -0.77
CLK3-224ENST00000568605 LGALS7P47929 136 aa10.26□□□□□ -0.77
CLK3-224ENST00000568605 CATR1Q13166 79 aa10.26□□□□□ -0.77
CLK3-224ENST00000568605 NSUN5P1Q3KNT7 163 aa10.26□□□□□ -0.77
CLK3-224ENST00000568605 ACTBL2Q562R1 376 aa10.26□□□□□ -0.77
CLK3-224ENST00000568605 ZBTB34Q8NCN2 500 aa10.26□□□□□ -0.77
CLK3-224ENST00000568605 DYNC2LI1Q8TCX1 351 aa10.26□□□□□ -0.77
CLK3-224ENST00000568605 SECTM1Q8WVN6 248 aa10.26□□□□□ -0.77
CLK3-224ENST00000568605 NOL4LQ96MY1 436 aaPredicted RBP10.26□□□□□ -0.77
CLK3-224ENST00000568605 PARP11Q9NR21 331 aa10.26□□□□□ -0.77
CLK3-224ENST00000568605 METTL1Q9UBP6 276 aaKnown RBP10.26□□□□□ -0.77
CLK3-224ENST00000568605 TSSC4Q9Y5U2 329 aaPredicted RBP10.26□□□□□ -0.77
CLK3-224ENST00000568605 NBEAL1Q6ZS30 2694 aa10.25□□□□□ -0.77
CLK3-224ENST00000568605 IGKV1D-13A0A0B4J2D9 117 aa10.25□□□□□ -0.77
CLK3-224ENST00000568605 TCRBV4S1A1TA0A5B7 111 aa10.25□□□□□ -0.77
CLK3-224ENST00000568605 CREBL2O60519 120 aaPredicted RBP10.25□□□□□ -0.77
CLK3-224ENST00000568605 TSPAN15O95858 294 aa10.25□□□□□ -0.77
CLK3-224ENST00000568605 IGKV1-16P04430 117 aa10.25□□□□□ -0.77
CLK3-224ENST00000568605 IGF1P05019 195 aa10.25□□□□□ -0.77
CLK3-224ENST00000568605 IGKV1-13P0DP09 117 aa10.25□□□□□ -0.77
CLK3-224ENST00000568605 PF4V1P10720 104 aa10.25□□□□□ -0.77
CLK3-224ENST00000568605 AADACP22760 399 aa10.25□□□□□ -0.77
CLK3-224ENST00000568605 FXYD4P59646 89 aa10.25□□□□□ -0.77
CLK3-224ENST00000568605 MRPS10P82664 201 aaKnown RBP10.25□□□□□ -0.77
CLK3-224ENST00000568605 CD83Q01151 205 aa10.25□□□□□ -0.77
CLK3-224ENST00000568605 DYRK1AQ13627 763 aa10.25□□□□□ -0.77
CLK3-224ENST00000568605 VMA21Q3ZAQ7 101 aa10.25□□□□□ -0.77
CLK3-224ENST00000568605 TMEM177Q53S58 311 aa10.25□□□□□ -0.77
CLK3-224ENST00000568605 TEX38Q6PEX7 206 aa10.25□□□□□ -0.77
CLK3-224ENST00000568605 OVCH2Q7RTZ1 564 aa10.25□□□□□ -0.77
CLK3-224ENST00000568605 LAX1Q8IWV1 398 aa10.25□□□□□ -0.77
CLK3-224ENST00000568605 BVESQ8NE79 360 aa10.25□□□□□ -0.77
CLK3-224ENST00000568605 OSR1Q8TAX0 266 aaPredicted RBP10.25□□□□□ -0.77
CLK3-224ENST00000568605 ABHD5Q8WTS1 349 aa10.25□□□□□ -0.77
CLK3-224ENST00000568605 C5orf30Q96GV9 206 aa10.25□□□□□ -0.77
CLK3-224ENST00000568605 HSPB9Q9BQS6 159 aa10.25□□□□□ -0.77
CLK3-224ENST00000568605 C6orf62Q9GZU0 229 aaPredicted RBP10.25□□□□□ -0.77
CLK3-224ENST00000568605 SLC5A7Q9GZV3 580 aa10.25□□□□□ -0.77
CLK3-224ENST00000568605 OR51J1Q9H342 316 aa10.25□□□□□ -0.77
CLK3-224ENST00000568605 FBXL15Q9H469 300 aa10.25□□□□□ -0.77
CLK3-224ENST00000568605 LINC00527Q9UJ94 153 aa10.25□□□□□ -0.77
CLK3-224ENST00000568605 TNCP24821 2201 aa10.25□□□□□ -0.77
CLK3-224ENST00000568605 PKD1L1Q8TDX9 2849 aa10.25□□□□□ -0.77
CLK3-224ENST00000568605 MGAM2Q2M2H8 2515 aa10.24□□□□□ -0.77
CLK3-224ENST00000568605 ZNF701M0R085 212 aaPredicted RBP10.24□□□□□ -0.77
CLK3-224ENST00000568605 SLC25A17O43808 307 aa10.24□□□□□ -0.77
CLK3-224ENST00000568605 CRYZL1O95825 349 aa10.24□□□□□ -0.77
CLK3-224ENST00000568605 SLC6A1P30531 599 aa10.24□□□□□ -0.77
CLK3-224ENST00000568605 KIR2DS2P43631 304 aa10.24□□□□□ -0.77
CLK3-224ENST00000568605 TSPAN5P62079 268 aa10.24□□□□□ -0.77
CLK3-224ENST00000568605 PSG5Q15238 335 aa10.24□□□□□ -0.77
CLK3-224ENST00000568605 CXorf66Q5JRM2 361 aaPredicted RBP10.24□□□□□ -0.77
CLK3-224ENST00000568605 ZNF660Q6AZW8 331 aaPredicted RBP10.24□□□□□ -0.77
CLK3-224ENST00000568605 ZNF66Q6ZN08 573 aa10.24□□□□□ -0.77
CLK3-224ENST00000568605 ZNF329Q86UD4 541 aa10.24□□□□□ -0.77
CLK3-224ENST00000568605 TMEM17Q86X19 198 aa10.24□□□□□ -0.77
CLK3-224ENST00000568605 TCTEX1D1Q8N7M0 179 aa10.24□□□□□ -0.77
CLK3-224ENST00000568605 OR4S2Q8NH73 311 aa10.24□□□□□ -0.77
CLK3-224ENST00000568605 TCTEX1D2Q8WW35 142 aa10.24□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms