RNA–Protein interactions for RNA: ENST00000568357.1

VPS39-210, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 593 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-210ENST00000568357 RPS16P62249 146 aaKnown RBP11.76□□□□□ -0.53
VPS39-210ENST00000568357 CX3CL1P78423 397 aa11.76□□□□□ -0.53
VPS39-210ENST00000568357 NDPQ00604 133 aa11.76□□□□□ -0.53
VPS39-210ENST00000568357 CNIH2Q6PI25 160 aa11.76□□□□□ -0.53
VPS39-210ENST00000568357 ETV3LQ6ZN32 361 aa11.76□□□□□ -0.53
VPS39-210ENST00000568357 C8orf86Q6ZUL3 223 aa11.76□□□□□ -0.53
VPS39-210ENST00000568357 PDPNQ86YL7 162 aa11.76□□□□□ -0.53
VPS39-210ENST00000568357 GVQW1Q8N7I0 195 aa11.76□□□□□ -0.53
VPS39-210ENST00000568357 SLC25A46Q96AG3 418 aa11.76□□□□□ -0.53
VPS39-210ENST00000568357 FLYWCH2Q96CP2 140 aaKnown RBP11.76□□□□□ -0.53
VPS39-210ENST00000568357 PARP11Q9NR21 331 aa11.76□□□□□ -0.53
VPS39-210ENST00000568357 FBXO7Q9Y3I1 522 aa11.76□□□□□ -0.53
VPS39-210ENST00000568357 NUDT19A8MXV4 375 aa11.75□□□□□ -0.53
VPS39-210ENST00000568357 APOA2P02652 100 aa11.75□□□□□ -0.53
VPS39-210ENST00000568357 EGR2P11161 476 aaPredicted RBP11.75□□□□□ -0.53
VPS39-210ENST00000568357 IGLL1P15814 213 aa11.75□□□□□ -0.53
VPS39-210ENST00000568357 CD33P20138 364 aa11.75□□□□□ -0.53
VPS39-210ENST00000568357 PSMB8P28062 276 aa11.75□□□□□ -0.53
VPS39-210ENST00000568357 PLGLAQ15195 96 aa11.75□□□□□ -0.53
VPS39-210ENST00000568357 CXorf66Q5JRM2 361 aaPredicted RBP11.75□□□□□ -0.53
VPS39-210ENST00000568357 KPRPQ5T749 579 aaPredicted RBP11.75□□□□□ -0.53
VPS39-210ENST00000568357 ZNF660Q6AZW8 331 aaPredicted RBP11.75□□□□□ -0.53
VPS39-210ENST00000568357 ZNF695Q8IW36 515 aa11.75□□□□□ -0.53
VPS39-210ENST00000568357 MRPL41Q8IXM3 137 aaKnown RBP11.75□□□□□ -0.53
VPS39-210ENST00000568357 SAMD12Q8N8I0 201 aa11.75□□□□□ -0.53
VPS39-210ENST00000568357 KLHL30-AS1Q8NEE0 82 aa11.75□□□□□ -0.53
VPS39-210ENST00000568357 S100A16Q96FQ6 103 aaKnown RBP11.75□□□□□ -0.53
VPS39-210ENST00000568357 CLCC1Q96S66 551 aa11.75□□□□□ -0.53
VPS39-210ENST00000568357 NAA50Q9GZZ1 169 aaKnown RBP11.75□□□□□ -0.53
VPS39-210ENST00000568357 KLK15Q9H2R5 256 aa11.75□□□□□ -0.53
VPS39-210ENST00000568357 SLC35D1Q9NTN3 355 aa11.75□□□□□ -0.53
VPS39-210ENST00000568357 METTL1Q9UBP6 276 aaKnown RBP11.75□□□□□ -0.53
VPS39-210ENST00000568357 OR2W1Q9Y3N9 320 aa11.75□□□□□ -0.53
VPS39-210ENST00000568357 TRAV41A0A0B4J266 112 aa11.74□□□□□ -0.53
VPS39-210ENST00000568357 IGKV1D-13A0A0B4J2D9 117 aa11.74□□□□□ -0.53
VPS39-210ENST00000568357 SRRM4A7MD48 611 aaKnown RBP11.74□□□□□ -0.53
VPS39-210ENST00000568357 XRCC3O43542 346 aa11.74□□□□□ -0.53
VPS39-210ENST00000568357 IGLV2-14P01704 120 aa11.74□□□□□ -0.53
VPS39-210ENST00000568357 IGLV2-23P01705 113 aa11.74□□□□□ -0.53
VPS39-210ENST00000568357 HLA-DQB1P01920 261 aa11.74□□□□□ -0.53
VPS39-210ENST00000568357 FCER2P06734 321 aa11.74□□□□□ -0.53
VPS39-210ENST00000568357 OR5H8P0DN80 308 aa11.74□□□□□ -0.53
VPS39-210ENST00000568357 IGKV1-13P0DP09 117 aa11.74□□□□□ -0.53
VPS39-210ENST00000568357 DUTP33316 252 aaKnown RBP11.74□□□□□ -0.53
VPS39-210ENST00000568357 CDX1P47902 265 aaPredicted RBP11.74□□□□□ -0.53
VPS39-210ENST00000568357 THBS3P49746 956 aa11.74□□□□□ -0.53
VPS39-210ENST00000568357 KIAA0141Q14154 515 aaPredicted RBP11.74□□□□□ -0.53
VPS39-210ENST00000568357 UBE2NLQ5JXB2 153 aa11.74□□□□□ -0.53
VPS39-210ENST00000568357 HOGA1Q86XE5 327 aa11.74□□□□□ -0.53
VPS39-210ENST00000568357 LINC00482Q8N8I6 264 aa11.74□□□□□ -0.53
VPS39-210ENST00000568357 MINDY2Q8NBR6 621 aa11.74□□□□□ -0.53
VPS39-210ENST00000568357 BVESQ8NE79 360 aa11.74□□□□□ -0.53
VPS39-210ENST00000568357 BEST4Q8NFU0 473 aa11.74□□□□□ -0.53
VPS39-210ENST00000568357 DDB2Q92466 427 aa11.74□□□□□ -0.53
VPS39-210ENST00000568357 DUX3Q96PT4 197 aa11.74□□□□□ -0.53
VPS39-210ENST00000568357 TSNAXQ99598 290 aaKnown RBP11.74□□□□□ -0.53
VPS39-210ENST00000568357 TPSG1Q9NRR2 321 aa11.74□□□□□ -0.53
VPS39-210ENST00000568357 LINC00473A8K010 186 aa11.73□□□□□ -0.53
VPS39-210ENST00000568357 SLC25A17O43808 307 aa11.73□□□□□ -0.53
VPS39-210ENST00000568357 TUSC2O75896 110 aa11.73□□□□□ -0.53
VPS39-210ENST00000568357 IGLV1-40P01703 118 aa11.73□□□□□ -0.53
VPS39-210ENST00000568357 PRB2P02812 416 aaPredicted RBP11.73□□□□□ -0.53
VPS39-210ENST00000568357 CRYGBP07316 175 aa11.73□□□□□ -0.53
VPS39-210ENST00000568357 SLC6A1P30531 599 aa11.73□□□□□ -0.53
VPS39-210ENST00000568357 LUMP51884 338 aaPredicted RBP11.73□□□□□ -0.53
VPS39-210ENST00000568357 C19orf54Q5BKX5 351 aa11.73□□□□□ -0.53
VPS39-210ENST00000568357 ZNF562Q6V9R5 426 aa11.73□□□□□ -0.53
VPS39-210ENST00000568357 RAX2Q96IS3 184 aa11.73□□□□□ -0.53
VPS39-210ENST00000568357 P2RX4Q99571 388 aa11.73□□□□□ -0.53
VPS39-210ENST00000568357 NUBP2Q9Y5Y2 271 aa11.73□□□□□ -0.53
VPS39-210ENST00000568357 MEIS3P1A6NDR6 274 aa11.72□□□□□ -0.53
VPS39-210ENST00000568357 SOX15O60248 233 aa11.72□□□□□ -0.53
VPS39-210ENST00000568357 SPDEFO95238 335 aa11.72□□□□□ -0.53
VPS39-210ENST00000568357 CA2P00918 260 aa11.72□□□□□ -0.53
VPS39-210ENST00000568357 MYCNOSP40205 109 aa11.72□□□□□ -0.53
VPS39-210ENST00000568357 LGALS7P47929 136 aa11.72□□□□□ -0.53
VPS39-210ENST00000568357 CRIP2P52943 208 aaPredicted RBP11.72□□□□□ -0.53
VPS39-210ENST00000568357 TAGLNQ01995 201 aaKnown RBP11.72□□□□□ -0.53
VPS39-210ENST00000568357 PJVKQ0ZLH3 352 aa11.72□□□□□ -0.53
VPS39-210ENST00000568357 CTF1Q16619 201 aa11.72□□□□□ -0.53
VPS39-210ENST00000568357 ECSCRQ19T08 205 aa11.72□□□□□ -0.53
VPS39-210ENST00000568357 DEFB136Q30KP8 78 aa11.72□□□□□ -0.53
VPS39-210ENST00000568357 TMEM177Q53S58 311 aa11.72□□□□□ -0.53
VPS39-210ENST00000568357 ANKRD13BQ86YJ7 626 aa11.72□□□□□ -0.53
VPS39-210ENST00000568357 ZNF645Q8N7E2 425 aa11.72□□□□□ -0.53
VPS39-210ENST00000568357 MYOZ3Q8TDC0 251 aa11.72□□□□□ -0.53
VPS39-210ENST00000568357 SNAPC3Q92966 411 aa11.72□□□□□ -0.53
VPS39-210ENST00000568357 FAM103A1Q9BTL3 118 aaKnown RBP11.72□□□□□ -0.53
VPS39-210ENST00000568357 COMMD3Q9UBI1 195 aa11.72□□□□□ -0.53
VPS39-210ENST00000568357 A3GALT2U3KPV4 340 aa11.72□□□□□ -0.53
VPS39-210ENST00000568357 PLXNB1O43157 2135 aa11.72□□□□□ -0.53
VPS39-210ENST00000568357 NOTCH3Q9UM47 2321 aa11.71□□□□□ -0.53
VPS39-210ENST00000568357 CCL24O00175 119 aa11.71□□□□□ -0.53
VPS39-210ENST00000568357 ARPC1BO15143 372 aaKnown RBP11.71□□□□□ -0.53
VPS39-210ENST00000568357 EIF4EP06730 217 aaKnown RBP11.71□□□□□ -0.53
VPS39-210ENST00000568357 FCGR2CP31995 323 aa11.71□□□□□ -0.53
VPS39-210ENST00000568357 RAB9AP51151 201 aa11.71□□□□□ -0.53
VPS39-210ENST00000568357 ARPC4P59998 168 aa11.71□□□□□ -0.53
VPS39-210ENST00000568357 RPL30P62888 115 aaKnown RBP11.71□□□□□ -0.53
VPS39-210ENST00000568357 SSBP2P81877 361 aaPredicted RBP11.71□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms