RNA–Protein interactions for RNA: ENST00000566083.6

CLN3-222, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,409 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-222ENST00000566083 RPS25P62851 125 aaKnown RBP11.52□□□□□ -0.56
CLN3-222ENST00000566083 RAB3CQ96E17 227 aa11.52□□□□□ -0.56
CLN3-222ENST00000566083 RANGRFQ9HD47 186 aaPredicted RBP11.52□□□□□ -0.56
CLN3-222ENST00000566083 TPSG1Q9NRR2 321 aa11.52□□□□□ -0.56
CLN3-222ENST00000566083 BLOC1S6Q9UL45 172 aa11.52□□□□□ -0.56
CLN3-222ENST00000566083 RRP15Q9Y3B9 282 aaKnown RBP11.52□□□□□ -0.56
CLN3-222ENST00000566083 FABP7O15540 132 aa11.52□□□□□ -0.57
CLN3-222ENST00000566083 CNIH1O95406 144 aa11.52□□□□□ -0.57
CLN3-222ENST00000566083 TRGV3P03979 118 aa11.52□□□□□ -0.57
CLN3-222ENST00000566083 IGKV1-16P04430 117 aa11.52□□□□□ -0.57
CLN3-222ENST00000566083 RRASP10301 218 aa11.52□□□□□ -0.57
CLN3-222ENST00000566083 ZP3P21754 424 aa11.52□□□□□ -0.57
CLN3-222ENST00000566083 HSPA13P48723 471 aa11.52□□□□□ -0.57
CLN3-222ENST00000566083 AQP4P55087 323 aa11.52□□□□□ -0.57
CLN3-222ENST00000566083 FXYD3Q14802 87 aa11.52□□□□□ -0.57
CLN3-222ENST00000566083 ARL6IP1Q15041 203 aa11.52□□□□□ -0.57
CLN3-222ENST00000566083 ZNF383Q8NA42 475 aa11.52□□□□□ -0.57
CLN3-222ENST00000566083 DRAXINQ8NBI3 349 aaPredicted RBP11.52□□□□□ -0.57
CLN3-222ENST00000566083 OR10J5Q8NHC4 309 aa11.52□□□□□ -0.57
CLN3-222ENST00000566083 RHOVQ96L33 236 aa11.52□□□□□ -0.57
CLN3-222ENST00000566083 CLCC1Q96S66 551 aa11.52□□□□□ -0.57
CLN3-222ENST00000566083 GFI1Q99684 422 aa11.52□□□□□ -0.57
CLN3-222ENST00000566083 SLC35D1Q9NTN3 355 aa11.52□□□□□ -0.57
CLN3-222ENST00000566083 IGHV4OR15-8A0A075B7B6 117 aa11.51□□□□□ -0.57
CLN3-222ENST00000566083 A0A087WW49 117 aa11.51□□□□□ -0.57
CLN3-222ENST00000566083 TRAV1-2A0A0B4J238 106 aa11.51□□□□□ -0.57
CLN3-222ENST00000566083 C13orf42A0A1B0GVH6 325 aa11.51□□□□□ -0.57
CLN3-222ENST00000566083 METTL21EPA6NDL7 271 aa11.51□□□□□ -0.57
CLN3-222ENST00000566083 M0R1X1 148 aa11.51□□□□□ -0.57
CLN3-222ENST00000566083 LDLRAD4O15165 306 aa11.51□□□□□ -0.57
CLN3-222ENST00000566083 PROP1O75360 226 aa11.51□□□□□ -0.57
CLN3-222ENST00000566083 CRHBPP24387 322 aa11.51□□□□□ -0.57
CLN3-222ENST00000566083 SLURP1P55000 103 aa11.51□□□□□ -0.57
CLN3-222ENST00000566083 POC5Q8NA72 575 aa11.51□□□□□ -0.57
CLN3-222ENST00000566083 FAM103A1Q9BTL3 118 aaKnown RBP11.51□□□□□ -0.57
CLN3-222ENST00000566083 ALX4Q9H161 411 aaPredicted RBP11.51□□□□□ -0.57
CLN3-222ENST00000566083 ZNF355PQ9NSJ1 428 aa11.51□□□□□ -0.57
CLN3-222ENST00000566083 SLC25A17O43808 307 aa11.5□□□□□ -0.57
CLN3-222ENST00000566083 BRI3O95415 125 aa11.5□□□□□ -0.57
CLN3-222ENST00000566083 GP9P14770 177 aa11.5□□□□□ -0.57
CLN3-222ENST00000566083 RAB6AP20340 208 aa11.5□□□□□ -0.57
CLN3-222ENST00000566083 CLDN12P56749 244 aa11.5□□□□□ -0.57
CLN3-222ENST00000566083 FABP5Q01469 135 aa11.5□□□□□ -0.57
CLN3-222ENST00000566083 TBCEQ15813 527 aaPredicted RBP11.5□□□□□ -0.57
CLN3-222ENST00000566083 SRSF7Q16629 238 aaKnown RBP eCLIP11.5□□□□□ -0.57
CLN3-222ENST00000566083 RTL8BQ17RB0 113 aa11.5□□□□□ -0.57
CLN3-222ENST00000566083 PLAC9Q5JTB6 97 aa11.5□□□□□ -0.57
CLN3-222ENST00000566083 ZNF367Q7RTV3 350 aa11.5□□□□□ -0.57
CLN3-222ENST00000566083 ADTRPQ96IZ2 230 aa11.5□□□□□ -0.57
CLN3-222ENST00000566083 MS4A10Q96PG2 267 aa11.5□□□□□ -0.57
CLN3-222ENST00000566083 ASCL2Q99929 193 aa11.5□□□□□ -0.57
CLN3-222ENST00000566083 CABLES2Q9BTV7 478 aa11.5□□□□□ -0.57
CLN3-222ENST00000566083 STUB1Q9UNE7 303 aa11.5□□□□□ -0.57
CLN3-222ENST00000566083 TRBV6-7A0A0A0MS04 114 aa11.49□□□□□ -0.57
CLN3-222ENST00000566083 IGKV1-6A0A0C4DH72 117 aa11.49□□□□□ -0.57
CLN3-222ENST00000566083 TMEM272A0A1B0GTI8 110 aa11.49□□□□□ -0.57
CLN3-222ENST00000566083 IGHV3-11P01762 117 aa11.49□□□□□ -0.57
CLN3-222ENST00000566083 SPNP16150 400 aa11.49□□□□□ -0.57
CLN3-222ENST00000566083 GALP22466 123 aa11.49□□□□□ -0.57
CLN3-222ENST00000566083 AADACP22760 399 aa11.49□□□□□ -0.57
CLN3-222ENST00000566083 MYL9P24844 172 aa11.49□□□□□ -0.57
CLN3-222ENST00000566083 TALDO1P37837 337 aa11.49□□□□□ -0.57
CLN3-222ENST00000566083 OR10R2Q8NGX6 335 aa11.49□□□□□ -0.57
CLN3-222ENST00000566083 GRPEL2Q8TAA5 225 aa11.49□□□□□ -0.57
CLN3-222ENST00000566083 ZMAT4Q9H898 229 aa11.49□□□□□ -0.57
CLN3-222ENST00000566083 NKX1-2Q9UD57 310 aaPredicted RBP11.49□□□□□ -0.57
CLN3-222ENST00000566083 RBM7Q9Y580 266 aaKnown RBP11.49□□□□□ -0.57
CLN3-222ENST00000566083 IFITM5A6NNB3 132 aa11.48□□□□□ -0.57
CLN3-222ENST00000566083 BET1O15155 118 aa11.48□□□□□ -0.57
CLN3-222ENST00000566083 FCGR3AP08637 254 aa11.48□□□□□ -0.57
CLN3-222ENST00000566083 TATDN3Q17R31 274 aa11.48□□□□□ -0.57
CLN3-222ENST00000566083 ANKRD13BQ86YJ7 626 aa11.48□□□□□ -0.57
CLN3-222ENST00000566083 CASTOR1Q8WTX7 329 aa11.48□□□□□ -0.57
CLN3-222ENST00000566083 NRG4Q8WWG1 115 aa11.48□□□□□ -0.57
CLN3-222ENST00000566083 USMG5Q96IX5 58 aa11.48□□□□□ -0.57
CLN3-222ENST00000566083 HARBI1Q96MB7 349 aa11.48□□□□□ -0.57
CLN3-222ENST00000566083 GINS4Q9BRT9 223 aa11.48□□□□□ -0.57
CLN3-222ENST00000566083 OR2D2Q9H210 308 aa11.48□□□□□ -0.57
CLN3-222ENST00000566083 SDHAF2Q9NX18 166 aa11.48□□□□□ -0.57
CLN3-222ENST00000566083 SHOXO15266 292 aa11.47□□□□□ -0.57
CLN3-222ENST00000566083 CREBL2O60519 120 aaPredicted RBP11.47□□□□□ -0.57
CLN3-222ENST00000566083 SSX1Q16384 188 aa11.47□□□□□ -0.57
CLN3-222ENST00000566083 VMA21Q3ZAQ7 101 aa11.47□□□□□ -0.57
CLN3-222ENST00000566083 TMEM177Q53S58 311 aa11.47□□□□□ -0.57
CLN3-222ENST00000566083 HES5Q5TA89 166 aa11.47□□□□□ -0.57
CLN3-222ENST00000566083 Q6ZS49 121 aa11.47□□□□□ -0.57
CLN3-222ENST00000566083 KCNK7Q9Y2U2 307 aa11.47□□□□□ -0.57
CLN3-222ENST00000566083 TNCP24821 2201 aa11.47□□□□□ -0.57
CLN3-222ENST00000566083 TRDV1A0A1B0GX56 115 aa11.46□□□□□ -0.57
CLN3-222ENST00000566083 H0Y980 276 aa11.46□□□□□ -0.57
CLN3-222ENST00000566083 MRPS14O60783 128 aaKnown RBP11.46□□□□□ -0.57
CLN3-222ENST00000566083 IGLV2-23P01705 113 aa11.46□□□□□ -0.57
CLN3-222ENST00000566083 CTXN2P0C2S0 81 aa11.46□□□□□ -0.57
CLN3-222ENST00000566083 GSTT2P0CG29 244 aa11.46□□□□□ -0.57
CLN3-222ENST00000566083 GSTT2BP0CG30 244 aa11.46□□□□□ -0.57
CLN3-222ENST00000566083 HIST1H1DP16402 221 aaKnown RBP11.46□□□□□ -0.57
CLN3-222ENST00000566083 RAB3BP20337 219 aa11.46□□□□□ -0.57
CLN3-222ENST00000566083 ARFRP1Q13795 201 aa11.46□□□□□ -0.57
CLN3-222ENST00000566083 IGSF11Q5DX21 431 aa11.46□□□□□ -0.57
CLN3-222ENST00000566083 SBSPONQ8IVN8 264 aa11.46□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms