RNA–Protein interactions for RNA: ENST00000561713.1

VPS35-202, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 589 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-202ENST00000561713 LINC01619G3V211 115 aa14.64□□□□□ -0.07
VPS35-202ENST00000561713 ITGB1BP1O14713 200 aa14.64□□□□□ -0.07
VPS35-202ENST00000561713 LDLRAD4O15165 306 aa14.64□□□□□ -0.07
VPS35-202ENST00000561713 DENRO43583 198 aaKnown RBP14.64□□□□□ -0.07
VPS35-202ENST00000561713 SLC25A17O43808 307 aa14.64□□□□□ -0.07
VPS35-202ENST00000561713 RBBP9O75884 186 aa14.64□□□□□ -0.07
VPS35-202ENST00000561713 MC5RP33032 325 aa14.64□□□□□ -0.07
VPS35-202ENST00000561713 INSL3P51460 131 aa14.64□□□□□ -0.07
VPS35-202ENST00000561713 SSX1Q16384 188 aa14.64□□□□□ -0.07
VPS35-202ENST00000561713 C2orf76Q3KRA6 126 aa14.64□□□□□ -0.07
VPS35-202ENST00000561713 PRSS48Q7RTY5 328 aa14.64□□□□□ -0.07
VPS35-202ENST00000561713 OR56B1Q8NGI3 324 aa14.64□□□□□ -0.07
VPS35-202ENST00000561713 CNBD2Q96M20 576 aa14.64□□□□□ -0.07
VPS35-202ENST00000561713 PALMDQ9NP74 551 aa14.64□□□□□ -0.07
VPS35-202ENST00000561713 ZNF221Q9UK13 617 aa14.64□□□□□ -0.07
VPS35-202ENST00000561713 KCNK7Q9Y2U2 307 aa14.64□□□□□ -0.07
VPS35-202ENST00000561713 NUBP2Q9Y5Y2 271 aa14.64□□□□□ -0.07
VPS35-202ENST00000561713 V9GY05 133 aa14.64□□□□□ -0.07
VPS35-202ENST00000561713 SMIM30A4D0T7 59 aa14.63□□□□□ -0.07
VPS35-202ENST00000561713 TRDCB7Z8K6 153 aa14.63□□□□□ -0.07
VPS35-202ENST00000561713 ARPC1BO15143 372 aaKnown RBP14.63□□□□□ -0.07
VPS35-202ENST00000561713 BET1O15155 118 aa14.63□□□□□ -0.07
VPS35-202ENST00000561713 APOA2P02652 100 aa14.63□□□□□ -0.07
VPS35-202ENST00000561713 TFAP2AP05549 437 aa14.63□□□□□ -0.07
VPS35-202ENST00000561713 FRMD6-AS1P0C7T7 363 aa14.63□□□□□ -0.07
VPS35-202ENST00000561713 SPNP16150 400 aa14.63□□□□□ -0.07
VPS35-202ENST00000561713 PSMA1P25786 263 aaKnown RBP14.63□□□□□ -0.07
VPS35-202ENST00000561713 RPS16P62249 146 aaKnown RBP14.63□□□□□ -0.07
VPS35-202ENST00000561713 TRAM1Q15629 374 aa14.63□□□□□ -0.07
VPS35-202ENST00000561713 IGSF11Q5DX21 431 aa14.63□□□□□ -0.07
VPS35-202ENST00000561713 IZUMO2Q6UXV1 221 aa14.63□□□□□ -0.07
VPS35-202ENST00000561713 PTX4Q96A99 478 aa14.63□□□□□ -0.07
VPS35-202ENST00000561713 OR2D2Q9H210 308 aa14.63□□□□□ -0.07
VPS35-202ENST00000561713 MGAT4AQ9UM21 535 aa14.63□□□□□ -0.07
VPS35-202ENST00000561713 FABP7O15540 132 aa14.62□□□□□ -0.07
VPS35-202ENST00000561713 FCGR3AP08637 254 aa14.62□□□□□ -0.07
VPS35-202ENST00000561713 SSBP2P81877 361 aaPredicted RBP14.62□□□□□ -0.07
VPS35-202ENST00000561713 CD200R1LQ6Q8B3 271 aa14.62□□□□□ -0.07
VPS35-202ENST00000561713 TCTEX1D1Q8N7M0 179 aa14.62□□□□□ -0.07
VPS35-202ENST00000561713 TSNAXQ99598 290 aaKnown RBP14.62□□□□□ -0.07
VPS35-202ENST00000561713 SLC35D1Q9NTN3 355 aa14.62□□□□□ -0.07
VPS35-202ENST00000561713 ZNF230Q9UIE0 474 aaPredicted RBP14.62□□□□□ -0.07
VPS35-202ENST00000561713 TRGV3P03979 118 aa14.61□□□□□ -0.07
VPS35-202ENST00000561713 OR8U9P0C7N5 309 aa14.61□□□□□ -0.07
VPS35-202ENST00000561713 GNB3P16520 340 aa14.61□□□□□ -0.07
VPS35-202ENST00000561713 PJVKQ0ZLH3 352 aa14.61□□□□□ -0.07
VPS35-202ENST00000561713 TBCEQ15813 527 aaPredicted RBP14.61□□□□□ -0.07
VPS35-202ENST00000561713 ZFAND6Q6FIF0 208 aa14.61□□□□□ -0.07
VPS35-202ENST00000561713 ZNF367Q7RTV3 350 aa14.61□□□□□ -0.07
VPS35-202ENST00000561713 ZNF429Q86V71 674 aa14.61□□□□□ -0.07
VPS35-202ENST00000561713 PDPNQ86YL7 162 aa14.61□□□□□ -0.07
VPS35-202ENST00000561713 RAB3CQ96E17 227 aa14.61□□□□□ -0.07
VPS35-202ENST00000561713 MFNGO00587 321 aa14.6□□□□□ -0.07
VPS35-202ENST00000561713 SPDEFO95238 335 aa14.6□□□□□ -0.07
VPS35-202ENST00000561713 IGLV2-23P01705 113 aa14.6□□□□□ -0.07
VPS35-202ENST00000561713 GSTT2P0CG29 244 aa14.6□□□□□ -0.07
VPS35-202ENST00000561713 GSTT2BP0CG30 244 aa14.6□□□□□ -0.07
VPS35-202ENST00000561713 MRPS15P82914 257 aaKnown RBP14.6□□□□□ -0.07
VPS35-202ENST00000561713 TMEM267Q0VDI3 215 aaPredicted RBP14.6□□□□□ -0.07
VPS35-202ENST00000561713 FXYD3Q14802 87 aa14.6□□□□□ -0.07
VPS35-202ENST00000561713 OR4A4PQ8NGN8 299 aa14.6□□□□□ -0.07
VPS35-202ENST00000561713 CABLES2Q9BTV7 478 aa14.6□□□□□ -0.07
VPS35-202ENST00000561713 ZMAT4Q9H898 229 aa14.6□□□□□ -0.07
VPS35-202ENST00000561713 ZNF355PQ9NSJ1 428 aa14.6□□□□□ -0.07
VPS35-202ENST00000561713 SDHAF2Q9NX18 166 aa14.6□□□□□ -0.07
VPS35-202ENST00000561713 TRIM64CA6NLI5 447 aa14.59□□□□□ -0.07
VPS35-202ENST00000561713 APELAP0DMC3 54 aa14.59□□□□□ -0.07
VPS35-202ENST00000561713 PITPNAQ00169 270 aa14.59□□□□□ -0.07
VPS35-202ENST00000561713 AKIRIN2Q53H80 203 aa14.59□□□□□ -0.07
VPS35-202ENST00000561713 PYHIN1Q6K0P9 492 aa14.59□□□□□ -0.07
VPS35-202ENST00000561713 ZNF562Q6V9R5 426 aa14.59□□□□□ -0.07
VPS35-202ENST00000561713 OR5T1Q8NG75 326 aa14.59□□□□□ -0.07
VPS35-202ENST00000561713 FLYWCH2Q96CP2 140 aaKnown RBP14.59□□□□□ -0.07
VPS35-202ENST00000561713 HARBI1Q96MB7 349 aa14.59□□□□□ -0.07
VPS35-202ENST00000561713 CITED4Q96RK1 184 aa14.59□□□□□ -0.07
VPS35-202ENST00000561713 ACOT13Q9NPJ3 140 aa14.59□□□□□ -0.07
VPS35-202ENST00000561713 ELF5Q9UKW6 265 aaPredicted RBP14.59□□□□□ -0.07
VPS35-202ENST00000561713 RAB22AQ9UL26 194 aa14.59□□□□□ -0.07
VPS35-202ENST00000561713 GP9P14770 177 aa14.58□□□□□ -0.08
VPS35-202ENST00000561713 MYL9P24844 172 aa14.58□□□□□ -0.08
VPS35-202ENST00000561713 SRSF7Q16629 238 aaKnown RBP eCLIP14.58□□□□□ -0.08
VPS35-202ENST00000561713 ACSM6Q6P461 480 aa14.58□□□□□ -0.08
VPS35-202ENST00000561713 NR2C2APQ86WQ0 139 aa14.58□□□□□ -0.08
VPS35-202ENST00000561713 POC5Q8NA72 575 aa14.58□□□□□ -0.08
VPS35-202ENST00000561713 OR10R2Q8NGX6 335 aa14.58□□□□□ -0.08
VPS35-202ENST00000561713 RNF5Q99942 180 aa14.58□□□□□ -0.08
VPS35-202ENST00000561713 RSRP1Q9BUV0 290 aa14.58□□□□□ -0.08
VPS35-202ENST00000561713 GHITMQ9H3K2 345 aa14.58□□□□□ -0.08
VPS35-202ENST00000561713 NDUFB11Q9NX14 153 aa14.58□□□□□ -0.08
VPS35-202ENST00000561713 IGKV1D-8A0A087WSZ0 117 aa14.57□□□□□ -0.08
VPS35-202ENST00000561713 ANKRD34BA5PLL1 514 aa14.57□□□□□ -0.08
VPS35-202ENST00000561713 IFITM5A6NNB3 132 aa14.57□□□□□ -0.08
VPS35-202ENST00000561713 RAB27BO00194 218 aa14.57□□□□□ -0.08
VPS35-202ENST00000561713 CNIH1O95406 144 aa14.57□□□□□ -0.08
VPS35-202ENST00000561713 HSPB1P04792 205 aaKnown RBP14.57□□□□□ -0.08
VPS35-202ENST00000561713 HIST1H1DP16402 221 aaKnown RBP14.57□□□□□ -0.08
VPS35-202ENST00000561713 C22orf42Q6IC83 251 aa14.57□□□□□ -0.08
VPS35-202ENST00000561713 ZNF436-AS1Q8NC38 126 aaPredicted RBP14.57□□□□□ -0.08
VPS35-202ENST00000561713 BVESQ8NE79 360 aa14.57□□□□□ -0.08
VPS35-202ENST00000561713 OR10J5Q8NHC4 309 aa14.57□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms