RNA–Protein interactions for RNA: ENST00000557529.1

SHMT2-233, Transcript of serine hydroxymethyltransferase 2, human

TSL 2

Gene SHMT2, Length 1,369 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SHMT2-233	ENST00000557529	CACNG5	Q9UF02	275 aa		10.24	□□□□□ -0.77
SHMT2-233	ENST00000557529	UBQLN2	Q9UHD9	624 aa		10.24	□□□□□ -0.77
SHMT2-233	ENST00000557529	RCL1	Q9Y2P8	373 aa	Known RBP	10.24	□□□□□ -0.77
SHMT2-233	ENST00000557529	SESN1	Q9Y6P5	492 aa		10.24	□□□□□ -0.77
SHMT2-233	ENST00000557529	PPIAL4C	A0A0B4J2A2	164 aa		10.23	□□□□□ -0.77
SHMT2-233	ENST00000557529	FAM90A26	D6RGX4	464 aa		10.23	□□□□□ -0.77
SHMT2-233	ENST00000557529	TAAR5	O14804	337 aa		10.23	□□□□□ -0.77
SHMT2-233	ENST00000557529	FCGR3B	O75015	233 aa		10.23	□□□□□ -0.77
SHMT2-233	ENST00000557529	PPIAL4G	P0DN37	164 aa		10.23	□□□□□ -0.77
SHMT2-233	ENST00000557529	IGHV1-8	P0DP01	117 aa		10.23	□□□□□ -0.77
SHMT2-233	ENST00000557529	HKR1	P10072	659 aa		10.23	□□□□□ -0.77
SHMT2-233	ENST00000557529	ARHGDIB	P52566	201 aa		10.23	□□□□□ -0.77
SHMT2-233	ENST00000557529	GNB2	P62879	340 aa		10.23	□□□□□ -0.77
SHMT2-233	ENST00000557529	VAMP2	P63027	116 aa		10.23	□□□□□ -0.77
SHMT2-233	ENST00000557529	EXOSC2	Q13868	293 aa	Known RBP	10.23	□□□□□ -0.77
SHMT2-233	ENST00000557529	CXorf66	Q5JRM2	361 aa	Predicted RBP	10.23	□□□□□ -0.77
SHMT2-233	ENST00000557529	FAM71F2	Q6NXP2	309 aa		10.23	□□□□□ -0.77
SHMT2-233	ENST00000557529	DMBX1	Q8NFW5	382 aa		10.23	□□□□□ -0.77
SHMT2-233	ENST00000557529	OR4S2	Q8NH73	311 aa		10.23	□□□□□ -0.77
SHMT2-233	ENST00000557529	OR9G1	Q8NH87	305 aa		10.23	□□□□□ -0.77
SHMT2-233	ENST00000557529	IGFBPL1	Q8WX77	278 aa		10.23	□□□□□ -0.77
SHMT2-233	ENST00000557529	DDB2	Q92466	427 aa		10.23	□□□□□ -0.77
SHMT2-233	ENST00000557529	ZNF462	Q96JM2	2506 aa		10.23	□□□□□ -0.77
SHMT2-233	ENST00000557529	MSGN1	A6NI15	193 aa		10.22	□□□□□ -0.77
SHMT2-233	ENST00000557529	FAM90A9P	A6NNJ1	464 aa		10.22	□□□□□ -0.77
SHMT2-233	ENST00000557529		J3QR06	171 aa		10.22	□□□□□ -0.77
SHMT2-233	ENST00000557529	TOR1A	O14656	332 aa		10.22	□□□□□ -0.77
SHMT2-233	ENST00000557529	KCNAB3	O43448	404 aa		10.22	□□□□□ -0.77
SHMT2-233	ENST00000557529	GPR137B	O60478	399 aa		10.22	□□□□□ -0.77
SHMT2-233	ENST00000557529	KRAS	P01116	189 aa		10.22	□□□□□ -0.77
SHMT2-233	ENST00000557529	LIPF	P07098	398 aa		10.22	□□□□□ -0.77
SHMT2-233	ENST00000557529		P0C879	139 aa		10.22	□□□□□ -0.77
SHMT2-233	ENST00000557529	IL3RA	P26951	378 aa		10.22	□□□□□ -0.77
SHMT2-233	ENST00000557529	G6PC	P35575	357 aa		10.22	□□□□□ -0.77
SHMT2-233	ENST00000557529	ERVK-16	P61578	105 aa		10.22	□□□□□ -0.77
SHMT2-233	ENST00000557529	POLR2G	P62487	172 aa	Known RBP eCLIP	10.22	□□□□□ -0.77
SHMT2-233	ENST00000557529	TAGLN	Q01995	201 aa	Known RBP	10.22	□□□□□ -0.77
SHMT2-233	ENST00000557529		Q6ZRM9	215 aa		10.22	□□□□□ -0.77
SHMT2-233	ENST00000557529	ZNF833P	Q6ZTB9	187 aa		10.22	□□□□□ -0.77
SHMT2-233	ENST00000557529	H2BFWT	Q7Z2G1	175 aa		10.22	□□□□□ -0.77
SHMT2-233	ENST00000557529	LY6G5B	Q8NDX9	201 aa		10.22	□□□□□ -0.77
SHMT2-233	ENST00000557529	ST8SIA2	Q92186	375 aa		10.22	□□□□□ -0.77
SHMT2-233	ENST00000557529	TNFRSF14	Q92956	283 aa		10.22	□□□□□ -0.77
SHMT2-233	ENST00000557529	R3HDM4	Q96D70	268 aa		10.22	□□□□□ -0.77
SHMT2-233	ENST00000557529	RAB40C	Q96S21	281 aa		10.22	□□□□□ -0.77
SHMT2-233	ENST00000557529	CCL19	Q99731	98 aa		10.22	□□□□□ -0.77
SHMT2-233	ENST00000557529	SSBP3	Q9BWW4	388 aa	Predicted RBP	10.22	□□□□□ -0.77
SHMT2-233	ENST00000557529	ZNF471	Q9BX82	626 aa	Predicted RBP	10.22	□□□□□ -0.77
SHMT2-233	ENST00000557529	TMEM133	Q9H2Q1	129 aa		10.22	□□□□□ -0.77
SHMT2-233	ENST00000557529	C11orf1	Q9H5F2	150 aa		10.22	□□□□□ -0.77
SHMT2-233	ENST00000557529	CTNNBIP1	Q9NSA3	81 aa	Predicted RBP	10.22	□□□□□ -0.77
SHMT2-233	ENST00000557529	MARCH11	A6NNE9	402 aa		10.21	□□□□□ -0.78
SHMT2-233	ENST00000557529	SSSCA1	O60232	199 aa		10.21	□□□□□ -0.78
SHMT2-233	ENST00000557529	NDUFS7	O75251	213 aa		10.21	□□□□□ -0.78
SHMT2-233	ENST00000557529	CFD	P00746	253 aa	Predicted RBP	10.21	□□□□□ -0.78
SHMT2-233	ENST00000557529	COX6B1	P14854	86 aa		10.21	□□□□□ -0.78
SHMT2-233	ENST00000557529	NQO2	P16083	231 aa		10.21	□□□□□ -0.78
SHMT2-233	ENST00000557529	ERVFRD-1	P60508	538 aa		10.21	□□□□□ -0.78
SHMT2-233	ENST00000557529	EIF5A	P63241	154 aa	Known RBP	10.21	□□□□□ -0.78
SHMT2-233	ENST00000557529	DHRS7B	Q6IAN0	325 aa	Predicted RBP	10.21	□□□□□ -0.78
SHMT2-233	ENST00000557529	ABHD12	Q8N2K0	398 aa		10.21	□□□□□ -0.78
SHMT2-233	ENST00000557529	C11orf42	Q8N5U0	333 aa		10.21	□□□□□ -0.78
SHMT2-233	ENST00000557529	OR10X1	Q8NGY0	326 aa		10.21	□□□□□ -0.78
SHMT2-233	ENST00000557529	STOML3	Q8TAV4	291 aa		10.21	□□□□□ -0.78
SHMT2-233	ENST00000557529	TMEM186	Q96B77	213 aa		10.21	□□□□□ -0.78
SHMT2-233	ENST00000557529	PHYHIPL	Q96FC7	376 aa		10.21	□□□□□ -0.78
SHMT2-233	ENST00000557529	SLC25A31	Q9H0C2	315 aa		10.21	□□□□□ -0.78
SHMT2-233	ENST00000557529	MAGT1	Q9H0U3	335 aa		10.21	□□□□□ -0.78
SHMT2-233	ENST00000557529	CACFD1	Q9UGQ2	172 aa		10.21	□□□□□ -0.78
SHMT2-233	ENST00000557529	LOC105371242	A0A075B767	164 aa		10.2	□□□□□ -0.78
SHMT2-233	ENST00000557529	KIAA1324L	A8MWY0	1029 aa	Predicted RBP	10.2	□□□□□ -0.78
SHMT2-233	ENST00000557529	CHST1	O43916	411 aa		10.2	□□□□□ -0.78
SHMT2-233	ENST00000557529	MED6	O75586	246 aa		10.2	□□□□□ -0.78
SHMT2-233	ENST00000557529	SPDEF	O95238	335 aa		10.2	□□□□□ -0.78
SHMT2-233	ENST00000557529	RRAS	P10301	218 aa		10.2	□□□□□ -0.78
SHMT2-233	ENST00000557529	TPT1	P13693	172 aa	Known RBP	10.2	□□□□□ -0.78
SHMT2-233	ENST00000557529	PDLIM4	P50479	330 aa		10.2	□□□□□ -0.78
SHMT2-233	ENST00000557529	ZNF137P	P52743	207 aa		10.2	□□□□□ -0.78
SHMT2-233	ENST00000557529	PRRX1	P54821	245 aa		10.2	□□□□□ -0.78
SHMT2-233	ENST00000557529	LINC00205	P59089	165 aa		10.2	□□□□□ -0.78
SHMT2-233	ENST00000557529	RAB14	P61106	215 aa		10.2	□□□□□ -0.78
SHMT2-233	ENST00000557529	RPL23A	P62750	156 aa	Known RBP	10.2	□□□□□ -0.78
SHMT2-233	ENST00000557529	SRSF1	Q07955	248 aa	Known RBP eCLIP	10.2	□□□□□ -0.78
SHMT2-233	ENST00000557529	RTL8B	Q17RB0	113 aa		10.2	□□□□□ -0.78
SHMT2-233	ENST00000557529	IZUMO4	Q1ZYL8	232 aa		10.2	□□□□□ -0.78
SHMT2-233	ENST00000557529	C1orf229	Q6ZS94	237 aa	Predicted RBP	10.2	□□□□□ -0.78
SHMT2-233	ENST00000557529	OR2C3	Q8N628	320 aa		10.2	□□□□□ -0.78
SHMT2-233	ENST00000557529	ZNF383	Q8NA42	475 aa		10.2	□□□□□ -0.78
SHMT2-233	ENST00000557529	SCARB1	Q8WTV0	552 aa		10.2	□□□□□ -0.78
SHMT2-233	ENST00000557529	LYRM2	Q9NU23	88 aa	Predicted RBP	10.2	□□□□□ -0.78
SHMT2-233	ENST00000557529	USF3	Q68DE3	2245 aa		10.2	□□□□□ -0.78
SHMT2-233	ENST00000557529	MYO18B	Q8IUG5	2567 aa		10.19	□□□□□ -0.78
SHMT2-233	ENST00000557529	ARID1A	O14497	2285 aa		10.19	□□□□□ -0.78
SHMT2-233	ENST00000557529	C22orf46	C9J442	243 aa		10.19	□□□□□ -0.78
SHMT2-233	ENST00000557529		M0R1W7	72 aa		10.19	□□□□□ -0.78
SHMT2-233	ENST00000557529	SYNGR2	O43760	224 aa		10.19	□□□□□ -0.78
SHMT2-233	ENST00000557529	HRAS	P01112	189 aa		10.19	□□□□□ -0.78
SHMT2-233	ENST00000557529	IGHV4-39	P01824	125 aa		10.19	□□□□□ -0.78
SHMT2-233	ENST00000557529	APOA2	P02652	100 aa		10.19	□□□□□ -0.78
SHMT2-233	ENST00000557529	GAPDH	P04406	335 aa	Known RBP	10.19	□□□□□ -0.78

Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms