RNA–Protein interactions for RNA: ENST00000556798.1

SHMT2-225, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 525 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-225ENST00000556798 A6NHS1 94 aa13.9□□□□□ -0.18
SHMT2-225ENST00000556798 M0QZK8 103 aa13.9□□□□□ -0.18
SHMT2-225ENST00000556798 CTDSPLO15194 276 aa13.9□□□□□ -0.18
SHMT2-225ENST00000556798 APOA2P02652 100 aa13.9□□□□□ -0.18
SHMT2-225ENST00000556798 DUTP33316 252 aaKnown RBP13.9□□□□□ -0.18
SHMT2-225ENST00000556798 MMDQ15546 238 aa13.9□□□□□ -0.18
SHMT2-225ENST00000556798 Q8N9W7 124 aa13.9□□□□□ -0.18
SHMT2-225ENST00000556798 OR6Q1Q8NGQ2 317 aa13.9□□□□□ -0.18
SHMT2-225ENST00000556798 SPATA3Q8NHX4 192 aa13.9□□□□□ -0.18
SHMT2-225ENST00000556798 GPHA2Q96T91 129 aa13.9□□□□□ -0.18
SHMT2-225ENST00000556798 TINAGL1Q9GZM7 467 aaPredicted RBP13.9□□□□□ -0.18
SHMT2-225ENST00000556798 SLC5A7Q9GZV3 580 aa13.9□□□□□ -0.18
SHMT2-225ENST00000556798 FXYD6Q9H0Q3 95 aa13.9□□□□□ -0.18
SHMT2-225ENST00000556798 SLC35D1Q9NTN3 355 aa13.9□□□□□ -0.18
SHMT2-225ENST00000556798 RBMX2Q9Y388 322 aaKnown RBP13.9□□□□□ -0.18
SHMT2-225ENST00000556798 V9GYH0 126 aa13.9□□□□□ -0.18
SHMT2-225ENST00000556798 PLXNB1O43157 2135 aa13.9□□□□□ -0.18
SHMT2-225ENST00000556798 A0A1B0GUS0 222 aa13.89□□□□□ -0.19
SHMT2-225ENST00000556798 LINC00473A8K010 186 aa13.89□□□□□ -0.19
SHMT2-225ENST00000556798 FGF16O43320 207 aa13.89□□□□□ -0.19
SHMT2-225ENST00000556798 PEX14O75381 377 aa13.89□□□□□ -0.19
SHMT2-225ENST00000556798 CD3DP04234 171 aa13.89□□□□□ -0.19
SHMT2-225ENST00000556798 IGKV1-16P04430 117 aa13.89□□□□□ -0.19
SHMT2-225ENST00000556798 MC5RP33032 325 aa13.89□□□□□ -0.19
SHMT2-225ENST00000556798 THBS3P49746 956 aa13.89□□□□□ -0.19
SHMT2-225ENST00000556798 PROK1P58294 105 aa13.89□□□□□ -0.19
SHMT2-225ENST00000556798 TSPAN5P62079 268 aa13.89□□□□□ -0.19
SHMT2-225ENST00000556798 ACTBL2Q562R1 376 aa13.89□□□□□ -0.19
SHMT2-225ENST00000556798 DHRS11Q6UWP2 260 aa13.89□□□□□ -0.19
SHMT2-225ENST00000556798 CCDC190Q86UF4 302 aa13.89□□□□□ -0.19
SHMT2-225ENST00000556798 Q8N2B8 174 aa13.89□□□□□ -0.19
SHMT2-225ENST00000556798 C3orf56Q8N813 242 aa13.89□□□□□ -0.19
SHMT2-225ENST00000556798 WFDC12Q8WWY7 111 aa13.89□□□□□ -0.19
SHMT2-225ENST00000556798 MOB3AQ96BX8 217 aa13.89□□□□□ -0.19
SHMT2-225ENST00000556798 SERTAD4Q9NUC0 356 aa13.89□□□□□ -0.19
SHMT2-225ENST00000556798 TAS2R8Q9NYW2 309 aa13.89□□□□□ -0.19
SHMT2-225ENST00000556798 TNFSF12O43508 249 aa13.88□□□□□ -0.19
SHMT2-225ENST00000556798 SLC22A5O76082 557 aa13.88□□□□□ -0.19
SHMT2-225ENST00000556798 VDAC2P45880 294 aaPredicted RBP13.88□□□□□ -0.19
SHMT2-225ENST00000556798 RPL30P62888 115 aaKnown RBP13.88□□□□□ -0.19
SHMT2-225ENST00000556798 SRSF4Q08170 494 aaKnown RBP13.88□□□□□ -0.19
SHMT2-225ENST00000556798 ZNF79Q15937 498 aa13.88□□□□□ -0.19
SHMT2-225ENST00000556798 RNASE10Q5GAN6 216 aaKnown RBP13.88□□□□□ -0.19
SHMT2-225ENST00000556798 OR2B11Q5JQS5 317 aa13.88□□□□□ -0.19
SHMT2-225ENST00000556798 VAX1Q5SQQ9 334 aa13.88□□□□□ -0.19
SHMT2-225ENST00000556798 KCTD9Q7L273 389 aa13.88□□□□□ -0.19
SHMT2-225ENST00000556798 PDPNQ86YL7 162 aa13.88□□□□□ -0.19
SHMT2-225ENST00000556798 FAM71E2Q8N5Q1 922 aa13.88□□□□□ -0.19
SHMT2-225ENST00000556798 TMEM229BQ8NBD8 167 aa13.88□□□□□ -0.19
SHMT2-225ENST00000556798 BVESQ8NE79 360 aa13.88□□□□□ -0.19
SHMT2-225ENST00000556798 OR8H1Q8NGG4 311 aa13.88□□□□□ -0.19
SHMT2-225ENST00000556798 OR4D10Q8NGI6 311 aa13.88□□□□□ -0.19
SHMT2-225ENST00000556798 OR6F1Q8NGZ6 308 aa13.88□□□□□ -0.19
SHMT2-225ENST00000556798 DNHD1Q96M86 4753 aa13.88□□□□□ -0.19
SHMT2-225ENST00000556798 NBR2O15453 112 aa13.87□□□□□ -0.19
SHMT2-225ENST00000556798 GSTZ1O43708 216 aaPredicted RBP13.87□□□□□ -0.19
SHMT2-225ENST00000556798 VSIG10L2P0DP72 767 aa13.87□□□□□ -0.19
SHMT2-225ENST00000556798 TAS2R19P59542 299 aa13.87□□□□□ -0.19
SHMT2-225ENST00000556798 KRTAP10-3P60369 221 aa13.87□□□□□ -0.19
SHMT2-225ENST00000556798 SSBP1Q04837 148 aaKnown RBP13.87□□□□□ -0.19
SHMT2-225ENST00000556798 EIF4EBP1Q13541 118 aaPredicted RBP13.87□□□□□ -0.19
SHMT2-225ENST00000556798 PYDC2Q56P42 97 aa13.87□□□□□ -0.19
SHMT2-225ENST00000556798 FAAP20Q6NZ36 180 aa13.87□□□□□ -0.19
SHMT2-225ENST00000556798 ZNF818PQ6ZRF7 136 aa13.87□□□□□ -0.19
SHMT2-225ENST00000556798 KLHDC1Q8N7A1 406 aa13.87□□□□□ -0.19
SHMT2-225ENST00000556798 DDB2Q92466 427 aa13.87□□□□□ -0.19
SHMT2-225ENST00000556798 ADTRPQ96IZ2 230 aa13.87□□□□□ -0.19
SHMT2-225ENST00000556798 LIN7CQ9NUP9 197 aaKnown RBP13.87□□□□□ -0.19
SHMT2-225ENST00000556798 CD74P04233 296 aa13.86□□□□□ -0.19
SHMT2-225ENST00000556798 IFNA6P05013 189 aa13.86□□□□□ -0.19
SHMT2-225ENST00000556798 RPS16P62249 146 aaKnown RBP13.86□□□□□ -0.19
SHMT2-225ENST00000556798 RTL8BQ17RB0 113 aa13.86□□□□□ -0.19
SHMT2-225ENST00000556798 CNPY1Q3B7I2 92 aa13.86□□□□□ -0.19
SHMT2-225ENST00000556798 SPANXN2Q5MJ10 180 aa13.86□□□□□ -0.19
SHMT2-225ENST00000556798 STEAP1BQ6NZ63 245 aa13.86□□□□□ -0.19
SHMT2-225ENST00000556798 TCTEX1D2Q8WW35 142 aa13.86□□□□□ -0.19
SHMT2-225ENST00000556798 RASL11BQ9BPW5 248 aa13.86□□□□□ -0.19
SHMT2-225ENST00000556798 ZNF747Q9BV97 191 aa13.86□□□□□ -0.19
SHMT2-225ENST00000556798 KIAA1456Q9P272 454 aa13.86□□□□□ -0.19
SHMT2-225ENST00000556798 ANK2Q01484 3957 aa13.85□□□□□ -0.19
SHMT2-225ENST00000556798 FCGR3BO75015 233 aa13.85□□□□□ -0.19
SHMT2-225ENST00000556798 NDUFA3O95167 84 aa13.85□□□□□ -0.19
SHMT2-225ENST00000556798 RAB3DO95716 219 aa13.85□□□□□ -0.19
SHMT2-225ENST00000556798 CRYZL1O95825 349 aa13.85□□□□□ -0.19
SHMT2-225ENST00000556798 CSF1P09603 554 aa13.85□□□□□ -0.19
SHMT2-225ENST00000556798 TBPP20226 339 aa13.85□□□□□ -0.19
SHMT2-225ENST00000556798 GNRHRP30968 328 aa13.85□□□□□ -0.19
SHMT2-225ENST00000556798 HIST2H2BDQ6DRA6 164 aa13.85□□□□□ -0.19
SHMT2-225ENST00000556798 NPBQ8NG41 125 aa13.85□□□□□ -0.19
SHMT2-225ENST00000556798 FLYWCH2Q96CP2 140 aaKnown RBP13.85□□□□□ -0.19
SHMT2-225ENST00000556798 HSD17B10Q99714 261 aaKnown RBP13.85□□□□□ -0.19
SHMT2-225ENST00000556798 HSPB9Q9BQS6 159 aa13.85□□□□□ -0.19
SHMT2-225ENST00000556798 FBXL15Q9H469 300 aa13.85□□□□□ -0.19
SHMT2-225ENST00000556798 LINC01548A6NM66 108 aa13.84□□□□□ -0.19
SHMT2-225ENST00000556798 ETV6P41212 452 aa13.84□□□□□ -0.19
SHMT2-225ENST00000556798 TAGLNQ01995 201 aaKnown RBP13.84□□□□□ -0.19
SHMT2-225ENST00000556798 CBX3Q13185 183 aa13.84□□□□□ -0.19
SHMT2-225ENST00000556798 MSMO1Q15800 293 aa13.84□□□□□ -0.19
SHMT2-225ENST00000556798 C5orf64Q2M2E5 130 aa13.84□□□□□ -0.19
SHMT2-225ENST00000556798 AADACL3Q5VUY0 350 aa13.84□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 51.1 ms