RNA–Protein interactions for RNA: ENST00000555995.1

CCDC88C-210, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 689 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-210ENST00000555995 XRCC3O43542 346 aa16.21■□□□□ 0.19
CCDC88C-210ENST00000555995 SSX5O60225 188 aa16.21■□□□□ 0.19
CCDC88C-210ENST00000555995 TGFBR1P36897 503 aa16.21■□□□□ 0.19
CCDC88C-210ENST00000555995 CFHR3Q02985 330 aa16.21■□□□□ 0.19
CCDC88C-210ENST00000555995 SAMD5Q5TGI4 173 aa16.21■□□□□ 0.19
CCDC88C-210ENST00000555995 ZNF695Q8IW36 515 aa16.21■□□□□ 0.19
CCDC88C-210ENST00000555995 ZNF645Q8N7E2 425 aa16.21■□□□□ 0.19
CCDC88C-210ENST00000555995 KLHL30-AS1Q8NEE0 82 aa16.21■□□□□ 0.19
CCDC88C-210ENST00000555995 WFDC9Q8NEX5 89 aa16.21■□□□□ 0.19
CCDC88C-210ENST00000555995 BEST4Q8NFU0 473 aa16.21■□□□□ 0.19
CCDC88C-210ENST00000555995 ACOT12Q8WYK0 555 aa16.21■□□□□ 0.19
CCDC88C-210ENST00000555995 RITA1Q96K30 269 aa16.21■□□□□ 0.19
CCDC88C-210ENST00000555995 CMTM3Q96MX0 182 aa16.21■□□□□ 0.19
CCDC88C-210ENST00000555995 AUNIPQ9H7T9 357 aa16.21■□□□□ 0.19
CCDC88C-210ENST00000555995 METTL1Q9UBP6 276 aaKnown RBP16.21■□□□□ 0.19
CCDC88C-210ENST00000555995 TRAV41A0A0B4J266 112 aa16.2■□□□□ 0.18
CCDC88C-210ENST00000555995 CDX1P47902 265 aaPredicted RBP16.2■□□□□ 0.18
CCDC88C-210ENST00000555995 CRIP2P52943 208 aaPredicted RBP16.2■□□□□ 0.18
CCDC88C-210ENST00000555995 TMEM267Q0VDI3 215 aaPredicted RBP16.2■□□□□ 0.18
CCDC88C-210ENST00000555995 TMEM65Q6PI78 240 aa16.2■□□□□ 0.18
CCDC88C-210ENST00000555995 HOGA1Q86XE5 327 aa16.2■□□□□ 0.18
CCDC88C-210ENST00000555995 SAMD12Q8N8I0 201 aa16.2■□□□□ 0.18
CCDC88C-210ENST00000555995 RCC1LQ96I51 464 aaKnown RBP16.2■□□□□ 0.18
CCDC88C-210ENST00000555995 HLA-DQB1P01920 261 aa16.19■□□□□ 0.18
CCDC88C-210ENST00000555995 IGKV1-16P04430 117 aa16.19■□□□□ 0.18
CCDC88C-210ENST00000555995 MYCNOSP40205 109 aa16.19■□□□□ 0.18
CCDC88C-210ENST00000555995 NCS1P62166 190 aa16.19■□□□□ 0.18
CCDC88C-210ENST00000555995 PSG5Q15238 335 aa16.19■□□□□ 0.18
CCDC88C-210ENST00000555995 TMEM69Q5SWH9 247 aa16.19■□□□□ 0.18
CCDC88C-210ENST00000555995 KPRPQ5T749 579 aaPredicted RBP16.19■□□□□ 0.18
CCDC88C-210ENST00000555995 HARBI1Q96MB7 349 aa16.19■□□□□ 0.18
CCDC88C-210ENST00000555995 NECAP2Q9NVZ3 263 aa16.19■□□□□ 0.18
CCDC88C-210ENST00000555995 NOTCH1P46531 2555 aa16.19■□□□□ 0.18
CCDC88C-210ENST00000555995 SMIM18P0DKX4 95 aa16.18■□□□□ 0.18
CCDC88C-210ENST00000555995 PSMB8P28062 276 aa16.18■□□□□ 0.18
CCDC88C-210ENST00000555995 DUTP33316 252 aaKnown RBP16.18■□□□□ 0.18
CCDC88C-210ENST00000555995 VBP1P61758 197 aa16.18■□□□□ 0.18
CCDC88C-210ENST00000555995 CX3CL1P78423 397 aa16.18■□□□□ 0.18
CCDC88C-210ENST00000555995 TMEM177Q53S58 311 aa16.18■□□□□ 0.18
CCDC88C-210ENST00000555995 PYHIN1Q6K0P9 492 aa16.18■□□□□ 0.18
CCDC88C-210ENST00000555995 ZNF562Q6V9R5 426 aa16.18■□□□□ 0.18
CCDC88C-210ENST00000555995 ANKRD13BQ86YJ7 626 aa16.18■□□□□ 0.18
CCDC88C-210ENST00000555995 ABHD5Q8WTS1 349 aa16.18■□□□□ 0.18
CCDC88C-210ENST00000555995 AP3S1Q92572 193 aa16.18■□□□□ 0.18
CCDC88C-210ENST00000555995 RBMXL1Q96E39 390 aaKnown RBP16.18■□□□□ 0.18
CCDC88C-210ENST00000555995 IFT46Q9NQC8 304 aa16.18■□□□□ 0.18
CCDC88C-210ENST00000555995 MRPS7Q9Y2R9 242 aaKnown RBP16.18■□□□□ 0.18
CCDC88C-210ENST00000555995 PRELID3BQ9Y3B1 194 aa16.18■□□□□ 0.18
CCDC88C-210ENST00000555995 G3V4G9 280 aa16.17■□□□□ 0.18
CCDC88C-210ENST00000555995 SHOXO15266 292 aa16.17■□□□□ 0.18
CCDC88C-210ENST00000555995 GABARAPO95166 117 aa16.17■□□□□ 0.18
CCDC88C-210ENST00000555995 RPLP1P05386 114 aaKnown RBP16.17■□□□□ 0.18
CCDC88C-210ENST00000555995 NFYAP23511 347 aaPredicted RBP16.17■□□□□ 0.18
CCDC88C-210ENST00000555995 PPIFP30405 207 aaKnown RBP16.17■□□□□ 0.18
CCDC88C-210ENST00000555995 MSMO1Q15800 293 aa16.17■□□□□ 0.18
CCDC88C-210ENST00000555995 BEAN1Q3B7T3 259 aa16.17■□□□□ 0.18
CCDC88C-210ENST00000555995 C8orf86Q6ZUL3 223 aa16.17■□□□□ 0.18
CCDC88C-210ENST00000555995 REC114Q7Z4M0 266 aa16.17■□□□□ 0.18
CCDC88C-210ENST00000555995 C1QL4Q86Z23 238 aa16.17■□□□□ 0.18
CCDC88C-210ENST00000555995 OSR1Q8TAX0 266 aaPredicted RBP16.17■□□□□ 0.18
CCDC88C-210ENST00000555995 MCRIP2Q9BUT9 160 aaKnown RBP16.17■□□□□ 0.18
CCDC88C-210ENST00000555995 SMIM31A0A1B0GVY4 71 aa16.16■□□□□ 0.18
CCDC88C-210ENST00000555995 SLC25A17O43808 307 aa16.16■□□□□ 0.18
CCDC88C-210ENST00000555995 CREBL2O60519 120 aaPredicted RBP16.16■□□□□ 0.18
CCDC88C-210ENST00000555995 TUSC2O75896 110 aa16.16■□□□□ 0.18
CCDC88C-210ENST00000555995 APOA1P02647 267 aa16.16■□□□□ 0.18
CCDC88C-210ENST00000555995 CD40LGP29965 261 aa16.16■□□□□ 0.18
CCDC88C-210ENST00000555995 RORCP51449 518 aa16.16■□□□□ 0.18
CCDC88C-210ENST00000555995 ECSCRQ19T08 205 aa16.16■□□□□ 0.18
CCDC88C-210ENST00000555995 VMA21Q3ZAQ7 101 aa16.16■□□□□ 0.18
CCDC88C-210ENST00000555995 PDLIM3Q53GG5 364 aaPredicted RBP16.16■□□□□ 0.18
CCDC88C-210ENST00000555995 MZT2AQ6P582 158 aa16.16■□□□□ 0.18
CCDC88C-210ENST00000555995 KCTD9Q7L273 389 aa16.16■□□□□ 0.18
CCDC88C-210ENST00000555995 PPP1R27Q86WC6 154 aa16.16■□□□□ 0.18
CCDC88C-210ENST00000555995 MINDY2Q8NBR6 621 aa16.16■□□□□ 0.18
CCDC88C-210ENST00000555995 BVESQ8NE79 360 aa16.16■□□□□ 0.18
CCDC88C-210ENST00000555995 C4orf3Q8WVX3 66 aa16.16■□□□□ 0.18
CCDC88C-210ENST00000555995 HSD17B10Q99714 261 aaKnown RBP16.16■□□□□ 0.18
CCDC88C-210ENST00000555995 FOXA2Q9Y261 457 aaPredicted RBP16.16■□□□□ 0.18
CCDC88C-210ENST00000555995 RBMX2Q9Y388 322 aaKnown RBP16.16■□□□□ 0.18
CCDC88C-210ENST00000555995 WSB1Q9Y6I7 421 aa16.16■□□□□ 0.18
CCDC88C-210ENST00000555995 WIPF1O43516 503 aa16.15■□□□□ 0.18
CCDC88C-210ENST00000555995 CA2P00918 260 aa16.15■□□□□ 0.18
CCDC88C-210ENST00000555995 IGLV1-40P01703 118 aa16.15■□□□□ 0.18
CCDC88C-210ENST00000555995 TAS2R20P59543 309 aa16.15■□□□□ 0.18
CCDC88C-210ENST00000555995 GPR141Q7Z602 305 aa16.15■□□□□ 0.18
CCDC88C-210ENST00000555995 LINC00482Q8N8I6 264 aa16.15■□□□□ 0.18
CCDC88C-210ENST00000555995 OR5AP2Q8NGF4 316 aa16.15■□□□□ 0.18
CCDC88C-210ENST00000555995 OR5M8Q8NGP6 311 aa16.15■□□□□ 0.18
CCDC88C-210ENST00000555995 MYOZ3Q8TDC0 251 aa16.15■□□□□ 0.18
CCDC88C-210ENST00000555995 DDB2Q92466 427 aa16.15■□□□□ 0.18
CCDC88C-210ENST00000555995 ARPC1AQ92747 370 aa16.15■□□□□ 0.18
CCDC88C-210ENST00000555995 BORCS5Q969J3 196 aa16.15■□□□□ 0.18
CCDC88C-210ENST00000555995 C5orf30Q96GV9 206 aa16.15■□□□□ 0.18
CCDC88C-210ENST00000555995 UBE2E2Q96LR5 201 aa16.15■□□□□ 0.18
CCDC88C-210ENST00000555995 G3V318 75 aa16.14■□□□□ 0.17
CCDC88C-210ENST00000555995 NDPQ00604 133 aa16.14■□□□□ 0.17
CCDC88C-210ENST00000555995 CDK10Q15131 360 aa16.14■□□□□ 0.17
CCDC88C-210ENST00000555995 AKIRIN2Q53H80 203 aa16.14■□□□□ 0.17
CCDC88C-210ENST00000555995 ZNF66Q6ZN08 573 aa16.14■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 805.8 ms