RNA–Protein interactions for RNA: ENST00000553324.5

SHMT2-204, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 566 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-204ENST00000553324 HOGA1Q86XE5 327 aa12.05□□□□□ -0.48
SHMT2-204ENST00000553324 ANKRD13BQ86YJ7 626 aa12.05□□□□□ -0.48
SHMT2-204ENST00000553324 RNF152Q8N8N0 203 aa12.05□□□□□ -0.48
SHMT2-204ENST00000553324 BEST4Q8NFU0 473 aa12.05□□□□□ -0.48
SHMT2-204ENST00000553324 ACOT12Q8WYK0 555 aa12.05□□□□□ -0.48
SHMT2-204ENST00000553324 RBMXL1Q96E39 390 aaKnown RBP12.05□□□□□ -0.48
SHMT2-204ENST00000553324 MRPS26Q9BYN8 205 aaKnown RBP12.05□□□□□ -0.48
SHMT2-204ENST00000553324 FBXL15Q9H469 300 aa12.05□□□□□ -0.48
SHMT2-204ENST00000553324 SMIM31A0A1B0GVY4 71 aa12.04□□□□□ -0.48
SHMT2-204ENST00000553324 NUDT19A8MXV4 375 aa12.04□□□□□ -0.48
SHMT2-204ENST00000553324 IGKV1-16P04430 117 aa12.04□□□□□ -0.48
SHMT2-204ENST00000553324 CDX1P47902 265 aaPredicted RBP12.04□□□□□ -0.48
SHMT2-204ENST00000553324 RORCP51449 518 aa12.04□□□□□ -0.48
SHMT2-204ENST00000553324 VBP1P61758 197 aa12.04□□□□□ -0.48
SHMT2-204ENST00000553324 NCS1P62166 190 aa12.04□□□□□ -0.48
SHMT2-204ENST00000553324 CFHR3Q02985 330 aa12.04□□□□□ -0.48
SHMT2-204ENST00000553324 PSG5Q15238 335 aa12.04□□□□□ -0.48
SHMT2-204ENST00000553324 ZNF695Q8IW36 515 aa12.04□□□□□ -0.48
SHMT2-204ENST00000553324 ZNF645Q8N7E2 425 aa12.04□□□□□ -0.48
SHMT2-204ENST00000553324 TCTEX1D1Q8N7M0 179 aa12.04□□□□□ -0.48
SHMT2-204ENST00000553324 SAMD12Q8N8I0 201 aa12.04□□□□□ -0.48
SHMT2-204ENST00000553324 PARP11Q9NR21 331 aa12.04□□□□□ -0.48
SHMT2-204ENST00000553324 METTL1Q9UBP6 276 aaKnown RBP12.04□□□□□ -0.48
SHMT2-204ENST00000553324 TRAV41A0A0B4J266 112 aa12.03□□□□□ -0.48
SHMT2-204ENST00000553324 DUS4LO95620 317 aaKnown RBP12.03□□□□□ -0.48
SHMT2-204ENST00000553324 NFYAP23511 347 aaPredicted RBP12.03□□□□□ -0.48
SHMT2-204ENST00000553324 PSMB8P28062 276 aa12.03□□□□□ -0.48
SHMT2-204ENST00000553324 PPIFP30405 207 aaKnown RBP12.03□□□□□ -0.48
SHMT2-204ENST00000553324 DUTP33316 252 aaKnown RBP12.03□□□□□ -0.48
SHMT2-204ENST00000553324 MYCNOSP40205 109 aa12.03□□□□□ -0.48
SHMT2-204ENST00000553324 LINC00205P59089 165 aa12.03□□□□□ -0.48
SHMT2-204ENST00000553324 CX3CL1P78423 397 aa12.03□□□□□ -0.48
SHMT2-204ENST00000553324 TMEM69Q5SWH9 247 aa12.03□□□□□ -0.48
SHMT2-204ENST00000553324 SAMD5Q5TGI4 173 aa12.03□□□□□ -0.48
SHMT2-204ENST00000553324 AP3S1Q92572 193 aa12.03□□□□□ -0.48
SHMT2-204ENST00000553324 NECAP2Q9NVZ3 263 aa12.03□□□□□ -0.48
SHMT2-204ENST00000553324 PRELID3BQ9Y3B1 194 aa12.03□□□□□ -0.48
SHMT2-204ENST00000553324 WSB1Q9Y6I7 421 aa12.03□□□□□ -0.48
SHMT2-204ENST00000553324 SHOXO15266 292 aa12.02□□□□□ -0.49
SHMT2-204ENST00000553324 ATP6V0E1O15342 81 aa12.02□□□□□ -0.49
SHMT2-204ENST00000553324 RPLP1P05386 114 aaKnown RBP12.02□□□□□ -0.49
SHMT2-204ENST00000553324 SMIM18P0DKX4 95 aa12.02□□□□□ -0.49
SHMT2-204ENST00000553324 CD40LGP29965 261 aa12.02□□□□□ -0.49
SHMT2-204ENST00000553324 CRIP2P52943 208 aaPredicted RBP12.02□□□□□ -0.49
SHMT2-204ENST00000553324 TMEM177Q53S58 311 aa12.02□□□□□ -0.49
SHMT2-204ENST00000553324 PPP1R27Q86WC6 154 aa12.02□□□□□ -0.49
SHMT2-204ENST00000553324 GVQW1Q8N7I0 195 aa12.02□□□□□ -0.49
SHMT2-204ENST00000553324 KLHL30-AS1Q8NEE0 82 aa12.02□□□□□ -0.49
SHMT2-204ENST00000553324 RCC1LQ96I51 464 aaKnown RBP12.02□□□□□ -0.49
SHMT2-204ENST00000553324 COMMD3Q9UBI1 195 aa12.02□□□□□ -0.49
SHMT2-204ENST00000553324 MEGF8Q7Z7M0 2845 aa12.02□□□□□ -0.49
SHMT2-204ENST00000553324 G3V4G9 280 aa12.01□□□□□ -0.49
SHMT2-204ENST00000553324 J3QRK9 145 aa12.01□□□□□ -0.49
SHMT2-204ENST00000553324 FCN1O00602 326 aa12.01□□□□□ -0.49
SHMT2-204ENST00000553324 TUSC2O75896 110 aa12.01□□□□□ -0.49
SHMT2-204ENST00000553324 GABARAPO95166 117 aa12.01□□□□□ -0.49
SHMT2-204ENST00000553324 APOA1P02647 267 aa12.01□□□□□ -0.49
SHMT2-204ENST00000553324 MSMO1Q15800 293 aa12.01□□□□□ -0.49
SHMT2-204ENST00000553324 AKIRIN2Q53H80 203 aa12.01□□□□□ -0.49
SHMT2-204ENST00000553324 KPRPQ5T749 579 aaPredicted RBP12.01□□□□□ -0.49
SHMT2-204ENST00000553324 PYHIN1Q6K0P9 492 aa12.01□□□□□ -0.49
SHMT2-204ENST00000553324 MZT2AQ6P582 158 aa12.01□□□□□ -0.49
SHMT2-204ENST00000553324 C8orf86Q6ZUL3 223 aa12.01□□□□□ -0.49
SHMT2-204ENST00000553324 GPR141Q7Z602 305 aa12.01□□□□□ -0.49
SHMT2-204ENST00000553324 MINDY2Q8NBR6 621 aa12.01□□□□□ -0.49
SHMT2-204ENST00000553324 BVESQ8NE79 360 aa12.01□□□□□ -0.49
SHMT2-204ENST00000553324 OR5AP2Q8NGF4 316 aa12.01□□□□□ -0.49
SHMT2-204ENST00000553324 OSR1Q8TAX0 266 aaPredicted RBP12.01□□□□□ -0.49
SHMT2-204ENST00000553324 HARBI1Q96MB7 349 aa12.01□□□□□ -0.49
SHMT2-204ENST00000553324 HSD17B10Q99714 261 aaKnown RBP12.01□□□□□ -0.49
SHMT2-204ENST00000553324 GPR61Q9BZJ8 451 aa12.01□□□□□ -0.49
SHMT2-204ENST00000553324 IFT46Q9NQC8 304 aa12.01□□□□□ -0.49
SHMT2-204ENST00000553324 RBMX2Q9Y388 322 aaKnown RBP12.01□□□□□ -0.49
SHMT2-204ENST00000553324 NUBP2Q9Y5Y2 271 aa12.01□□□□□ -0.49
SHMT2-204ENST00000553324 G3V318 75 aa12□□□□□ -0.49
SHMT2-204ENST00000553324 SLC25A17O43808 307 aa12□□□□□ -0.49
SHMT2-204ENST00000553324 IGLV1-40P01703 118 aa12□□□□□ -0.49
SHMT2-204ENST00000553324 FCGR2CP31995 323 aa12□□□□□ -0.49
SHMT2-204ENST00000553324 PRSS3P35030 304 aa12□□□□□ -0.49
SHMT2-204ENST00000553324 RAB9AP51151 201 aa12□□□□□ -0.49
SHMT2-204ENST00000553324 TAS2R20P59543 309 aa12□□□□□ -0.49
SHMT2-204ENST00000553324 CTF1Q16619 201 aa12□□□□□ -0.49
SHMT2-204ENST00000553324 GPR107Q5VW38 600 aa12□□□□□ -0.49
SHMT2-204ENST00000553324 C1QL4Q86Z23 238 aa12□□□□□ -0.49
SHMT2-204ENST00000553324 TEX45Q8NA69 505 aa12□□□□□ -0.49
SHMT2-204ENST00000553324 ZBTB34Q8NCN2 500 aa12□□□□□ -0.49
SHMT2-204ENST00000553324 ABHD5Q8WTS1 349 aa12□□□□□ -0.49
SHMT2-204ENST00000553324 GIMAP1Q8WWP7 306 aa12□□□□□ -0.49
SHMT2-204ENST00000553324 DDB2Q92466 427 aa12□□□□□ -0.49
SHMT2-204ENST00000553324 UBE2E2Q96LR5 201 aa12□□□□□ -0.49
SHMT2-204ENST00000553324 TMEM68Q96MH6 324 aa12□□□□□ -0.49
SHMT2-204ENST00000553324 CLCC1Q96S66 551 aa12□□□□□ -0.49
SHMT2-204ENST00000553324 MCRIP2Q9BUT9 160 aaKnown RBP12□□□□□ -0.49
SHMT2-204ENST00000553324 MRPS7Q9Y2R9 242 aaKnown RBP12□□□□□ -0.49
SHMT2-204ENST00000553324 LINC00473A8K010 186 aa11.99□□□□□ -0.49
SHMT2-204ENST00000553324 CCL24O00175 119 aa11.99□□□□□ -0.49
SHMT2-204ENST00000553324 CNIH1O95406 144 aa11.99□□□□□ -0.49
SHMT2-204ENST00000553324 CA2P00918 260 aa11.99□□□□□ -0.49
SHMT2-204ENST00000553324 ZNF182P17025 639 aaPredicted RBP11.99□□□□□ -0.49
SHMT2-204ENST00000553324 ALDH3B2P48448 385 aa11.99□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms