RNA–Protein interactions for RNA: ENST00000545694.1

SYNE1-239, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 3

Gene SYNE1, Length 526 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-239ENST00000545694 TOR1AO14656 332 aa5.12□□□□□ -1.59
SYNE1-239ENST00000545694 TNFRSF13BO14836 293 aaPredicted RBP5.12□□□□□ -1.59
SYNE1-239ENST00000545694 RAB29O14966 203 aa5.12□□□□□ -1.59
SYNE1-239ENST00000545694 ADAM20O43506 726 aa5.12□□□□□ -1.59
SYNE1-239ENST00000545694 NDUFB3O43676 98 aa5.12□□□□□ -1.59
SYNE1-239ENST00000545694 DFFBO76075 338 aa5.12□□□□□ -1.59
SYNE1-239ENST00000545694 ZNF205O95201 554 aa5.12□□□□□ -1.59
SYNE1-239ENST00000545694 SPDEFO95238 335 aa5.12□□□□□ -1.59
SYNE1-239ENST00000545694 CLDN1O95832 211 aa5.12□□□□□ -1.59
SYNE1-239ENST00000545694 SCGB1D2O95969 90 aa5.12□□□□□ -1.59
SYNE1-239ENST00000545694 CYB5R3P00387 301 aaPredicted RBP5.12□□□□□ -1.59
SYNE1-239ENST00000545694 HPRT1P00492 218 aa5.12□□□□□ -1.59
SYNE1-239ENST00000545694 CFDP00746 253 aaPredicted RBP5.12□□□□□ -1.59
SYNE1-239ENST00000545694 RBP4P02753 201 aa5.12□□□□□ -1.59
SYNE1-239ENST00000545694 NMBP08949 121 aa5.12□□□□□ -1.59
SYNE1-239ENST00000545694 DAOP14920 347 aa5.12□□□□□ -1.59
SYNE1-239ENST00000545694 CD80P33681 288 aa5.12□□□□□ -1.59
SYNE1-239ENST00000545694 PPP1CCP36873 323 aaKnown RBP5.12□□□□□ -1.59
SYNE1-239ENST00000545694 PLA2G5P39877 138 aa5.12□□□□□ -1.59
SYNE1-239ENST00000545694 THBS3P49746 956 aa5.12□□□□□ -1.59
SYNE1-239ENST00000545694 AKR1C2P52895 323 aa5.12□□□□□ -1.59
SYNE1-239ENST00000545694 EDDM3BP56851 147 aa5.12□□□□□ -1.59
SYNE1-239ENST00000545694 LOXL3P58215 753 aa5.12□□□□□ -1.59
SYNE1-239ENST00000545694 RPL23AP62750 156 aaKnown RBP5.12□□□□□ -1.59
SYNE1-239ENST00000545694 BLOC1S1P78537 153 aa5.12□□□□□ -1.59
SYNE1-239ENST00000545694 CCL8P80075 99 aa5.12□□□□□ -1.59
SYNE1-239ENST00000545694 EDDM3AQ14507 147 aa5.12□□□□□ -1.59
SYNE1-239ENST00000545694 MST1LQ2TV78 715 aa5.12□□□□□ -1.59
SYNE1-239ENST00000545694 DHRS7BQ6IAN0 325 aaPredicted RBP5.12□□□□□ -1.59
SYNE1-239ENST00000545694 HEPN1Q6WQI6 88 aa5.12□□□□□ -1.59
SYNE1-239ENST00000545694 HSD17B13Q7Z5P4 300 aaPredicted RBP5.12□□□□□ -1.59
SYNE1-239ENST00000545694 STX12Q86Y82 276 aa5.12□□□□□ -1.59
SYNE1-239ENST00000545694 SLC7A5P1Q8MH63 180 aa5.12□□□□□ -1.59
SYNE1-239ENST00000545694 ZNRF1Q8ND25 227 aa5.12□□□□□ -1.59
SYNE1-239ENST00000545694 OR52L2PQ8NGH6 319 aa5.12□□□□□ -1.59
SYNE1-239ENST00000545694 S1PR3Q99500 378 aa5.12□□□□□ -1.59
SYNE1-239ENST00000545694 ARV1Q9H2C2 271 aa5.12□□□□□ -1.59
SYNE1-239ENST00000545694 C11orf1Q9H5F2 150 aa5.12□□□□□ -1.59
SYNE1-239ENST00000545694 CYTL1Q9NRR1 136 aa5.12□□□□□ -1.59
SYNE1-239ENST00000545694 CTNNBIP1Q9NSA3 81 aaPredicted RBP5.12□□□□□ -1.59
SYNE1-239ENST00000545694 CBLN4Q9NTU7 201 aa5.12□□□□□ -1.59
SYNE1-239ENST00000545694 IDI2-AS1Q9NZ38 188 aa5.12□□□□□ -1.59
SYNE1-239ENST00000545694 SLC25A10Q9UBX3 287 aaPredicted RBP5.12□□□□□ -1.59
SYNE1-239ENST00000545694 CACNA1BQ00975 2339 aa5.12□□□□□ -1.59
SYNE1-239ENST00000545694 SPTAN1Q13813 2472 aaKnown RBP5.12□□□□□ -1.59
SYNE1-239ENST00000545694 MYO18BQ8IUG5 2567 aa5.11□□□□□ -1.59
SYNE1-239ENST00000545694 NBEAQ8NFP9 2946 aa5.11□□□□□ -1.59
SYNE1-239ENST00000545694 DOPEY1Q5JWR5 2465 aa5.11□□□□□ -1.59
SYNE1-239ENST00000545694 IGHV3OR15-7A0A075B7D8 119 aa5.11□□□□□ -1.59
SYNE1-239ENST00000545694 RAB19A4D1S5 217 aa5.11□□□□□ -1.59
SYNE1-239ENST00000545694 ANKRD34BA5PLL1 514 aa5.11□□□□□ -1.59
SYNE1-239ENST00000545694 DEFB108AA8MXU0 73 aa5.11□□□□□ -1.59
SYNE1-239ENST00000545694 LEUTXA8MZ59 168 aa5.11□□□□□ -1.59
SYNE1-239ENST00000545694 KRBOX1C9JBD0 128 aa5.11□□□□□ -1.59
SYNE1-239ENST00000545694 TEX46H3BTG2 121 aa5.11□□□□□ -1.59
SYNE1-239ENST00000545694 FGF16O43320 207 aa5.11□□□□□ -1.59
SYNE1-239ENST00000545694 SOX15O60248 233 aa5.11□□□□□ -1.59
SYNE1-239ENST00000545694 GYPAP02724 150 aa5.11□□□□□ -1.59
SYNE1-239ENST00000545694 SEC11BP0C7V7 166 aa5.11□□□□□ -1.59
SYNE1-239ENST00000545694 P0C879 139 aa5.11□□□□□ -1.59
SYNE1-239ENST00000545694 LOXP28300 417 aaPredicted RBP5.11□□□□□ -1.59
SYNE1-239ENST00000545694 DUTP33316 252 aaKnown RBP5.11□□□□□ -1.59
SYNE1-239ENST00000545694 SSTR5P35346 364 aa5.11□□□□□ -1.59
SYNE1-239ENST00000545694 LPAR6P43657 344 aa5.11□□□□□ -1.59
SYNE1-239ENST00000545694 TMEM33P57088 247 aa5.11□□□□□ -1.59
SYNE1-239ENST00000545694 KRTAP10-2P60368 255 aa5.11□□□□□ -1.59
SYNE1-239ENST00000545694 ERVK-16P61578 105 aa5.11□□□□□ -1.59
SYNE1-239ENST00000545694 RPL31P62899 125 aaKnown RBP5.11□□□□□ -1.59
SYNE1-239ENST00000545694 HBG1P69891 147 aa5.11□□□□□ -1.59
SYNE1-239ENST00000545694 HBG2P69892 147 aa5.11□□□□□ -1.59
SYNE1-239ENST00000545694 C17orf58Q2M2W7 97 aa5.11□□□□□ -1.59
SYNE1-239ENST00000545694 AARDQ4LEZ3 155 aa5.11□□□□□ -1.59
SYNE1-239ENST00000545694 TMEM155Q4W5P6 130 aa5.11□□□□□ -1.59
SYNE1-239ENST00000545694 ZNF585BQ52M93 769 aa5.11□□□□□ -1.59
SYNE1-239ENST00000545694 UQCC3Q6UW78 93 aa5.11□□□□□ -1.59
SYNE1-239ENST00000545694 ALKAL2Q6UX46 152 aa5.11□□□□□ -1.59
SYNE1-239ENST00000545694 DTX2Q86UW9 622 aa5.11□□□□□ -1.59
SYNE1-239ENST00000545694 SPAG16Q8N0X2 631 aa5.11□□□□□ -1.59
SYNE1-239ENST00000545694 STPG2Q8N412 459 aa5.11□□□□□ -1.59
SYNE1-239ENST00000545694 FGFRL1Q8N441 504 aa5.11□□□□□ -1.59
SYNE1-239ENST00000545694 LINC00311Q8N616 119 aa5.11□□□□□ -1.59
SYNE1-239ENST00000545694 COMMD1Q8N668 190 aa5.11□□□□□ -1.59
SYNE1-239ENST00000545694 DMBX1Q8NFW5 382 aa5.11□□□□□ -1.59
SYNE1-239ENST00000545694 OR52E5Q8NH55 327 aa5.11□□□□□ -1.59
SYNE1-239ENST00000545694 LINC01560Q8TB33 94 aa5.11□□□□□ -1.59
SYNE1-239ENST00000545694 ZNF596Q8TC21 504 aa5.11□□□□□ -1.59
SYNE1-239ENST00000545694 TCTEX1D2Q8WW35 142 aa5.11□□□□□ -1.59
SYNE1-239ENST00000545694 TNFRSF14Q92956 283 aa5.11□□□□□ -1.59
SYNE1-239ENST00000545694 GPR146Q96CH1 333 aa5.11□□□□□ -1.59
SYNE1-239ENST00000545694 TIMD4Q96H15 378 aa5.11□□□□□ -1.59
SYNE1-239ENST00000545694 SMIM8Q96KF7 97 aa5.11□□□□□ -1.59
SYNE1-239ENST00000545694 CCL13Q99616 98 aa5.11□□□□□ -1.59
SYNE1-239ENST00000545694 ABHD14AQ9BUJ0 271 aa5.11□□□□□ -1.59
SYNE1-239ENST00000545694 SDHAF2Q9NX18 166 aa5.11□□□□□ -1.59
SYNE1-239ENST00000545694 PRR13Q9NZ81 148 aa5.11□□□□□ -1.59
SYNE1-239ENST00000545694 MIOXQ9UGB7 285 aa5.11□□□□□ -1.59
SYNE1-239ENST00000545694 RPUSD1Q9UJJ7 312 aaKnown RBP5.11□□□□□ -1.59
SYNE1-239ENST00000545694 PSG11Q9UQ72 335 aa5.11□□□□□ -1.59
SYNE1-239ENST00000545694 RCL1Q9Y2P8 373 aaKnown RBP5.11□□□□□ -1.59
SYNE1-239ENST00000545694 IGSF10Q6WRI0 2623 aa5.11□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms